NO01G03460.1, NO01G03460.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G03460.1
Unique Name	NO01G03460.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3294
Alignment location	chr1:902936..906317 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:902936..906317 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G03460.1 vs.
Match: EWM29280.1 (hypothetical protein Naga_100029g28 [Nannochloropsis gaditana])

HSP 1 Score: 66.6 bits (161), Expect = 1.800e-7
Identity = 45/148 (30.41%), Postives = 80/148 (54.05%), Query Frame = 0

Query:   97 WLSQDKDEDKEDKEEEEE-NAWDAMDRETEALIMRELRKDEESLYDDAAASAPIPRPTTPSEAEILLPTYNNNDSNDDPEAQFWAMHRAQQAETERKALEKEANFIREWCSAFVHLRVVGQTI-PPPPFYPPPPPSKFEDKVEILASH 243
            W  +   + ++ ++ ++  + + A +R+ E L+  EL K EESLY   + +A        S+   +   + N     DPEAQFWA+H  Q+ E + +ALE + NF+REW SAFV +R +G+++    P + P   ++ E   + ++ H
Sbjct:    3 WEKETASQRQDGRDGDDRVDPFAAAERKLEDLVWAELLKAEESLYASGSDNASTAAKKDQSKGLAVQDVHPN-----DPEAQFWALHHRQEEEAKLRALEGKLNFVREWSSAFVQVRALGKSVCTSLPAHQPKLDTEAEGTEDTVSPH 145

The following BLAST results are available for this feature:

BLAST of NO01G03460.1 vs.

BLAST of NO01G03460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29280.1	1.800e-7	30.41	hypothetical protein Naga_100029g28 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G03460	NO01G03460	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G03460.1	NO01G03460.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G03460.1.cds1	NO01G03460.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G03460.1.cds2	NO01G03460.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:902936..906317-
coding sequence from alignment at chr1:902936..906317-

mRNA sequence

>NO01G03460.1 ID=NO01G03460.1|Name=NO01G03460.1|organism=Nannochloropsis oceanica|type=mRNA|length=3294bp
TCTTTTACATTGATTTTTTCGTTCATTTCTTTCCCTGTCAACACATAAAC
AGAAATTTGTACACCTTATCTCTTTCATGACGTATCGAACTACACTGATT
TAGATCGCACCTTGGTATGCTGAGGCCGTGCTCTCACTGCTCGTCGATGG
CGTGGTCGCCGCTTCGATTGGCGTATAAATCCCCATCAATCCCAATACCC
CCTTTCCTCCCTGTGCATCCCTCCCCTCCTTCACCACCACATTCATCCAC
GGATGCTGCTGTTGCTGCTGCCTTCCTCCCTTTCTTCCCGCCCCAAATCC
CCTCCCTCCTCCTCCTCTTCCATCACTGCTCCCATTCAACTTATAAAATG
CACTGGCCAGGGCAGCAGAGTGGCTGGCCCTGTCATACACATTACCAGCA
CCACCTCCTGTGCCTCCTTGGCCGTTTCCCGGCTGCCCGCTCCCAATTTT
AGTGTAGGGTACACTGTCTAAATAAGGGTAGGCAGAGGAGAGATGATGTG
ACGCCATGCCACTGCCGGACTTACGCTTGTGCAGCACCGCTAAAATGACG
ATGGAGGGTAGAAGCTCCCAGAGAGGGTAGAGAAGGGCATCGAAGACATC
CGCGTTTATTTGAGGTGGGTAACCAGCGGCAGCTACCCAGGTGGACAACA
ACCCCGACGCCACTCCCAGATAATATGCCACGTGCACGAAAAACGCCAGC
CCACACAAGACGCACAATGCAATCAACCGTCGTCGCACCACATAAGGCAG
GGCCATCTTGGAAAATCTAAAGGCGTACTTGAACCAAATCAAGGTCCACA
GTATATACGACACTCCCAACAGAACAAACAGTGCCTGCAGCACTTGCCCA
CCGCTCAACACTCGACTCCCCCCCATGATCACAATCAGCAGAAAACCTAC
ATACAACAGTCCATTACTAATCAGAAAGGCAGGTCTTAGCCGAGGGAAAG
GGGCTCCTGTGGCGGTGTGACTGAGCTGGGCCCAAAAAAGGATGAGCAAG
CCGTAGGTGGTAAGGAAGAAGAGATCAGGAACTGTGCGGACCAGAGCACA
GGTCCACGAGCTAGGGCAGCTGTATTCCGCGAACAGCAGTGTTTCCGCCA
GGAGGCAGATGCATCTGGTTGGGGGTGAGGGGAGTGGGTGGTCGCGGGGG
GGAAGGGAGGGGGAGGTAGGTGAGCATGTTCAAAAGCCACGAAAGAAGCA
GGGCAAATTGCGCGACATTCCAGATCAGCCATGATGATTTCAACGTGACG
GAATTACAATAAGAACGAGGGCATTATAGAGCACACACAAACACAAGCAA
GCCAAAGCCCCAAACACCACTCAGGAGGCATCACTCTGTTTTACAAGGAC
ATATACAACGCTGCTCCCACCGCTCTCCAGCAGCTTCGACGACACGTCTG
CACTTTCCACAATCCCTTCAACCCTGCGCATCCTCGCCTTTTTTCCGCCT
TACCTTGCCACATTAGCCACGAGGAGCAAGAGGTGGATCCGTCGTCTCAT
CTCAGTCCCCGCACTCGAAGTGGCCGCATCGACATCCTCCTTTGACCGCA
CGATCTCTAAAAGACACAGACCAGCAGCACCGAGAAAAAGGCCTGCGTCT
GGTAGGAGTAGCCTTTCTCTCATTATTTATGTGTTGGTGCGCCCTGTGTG
GTTATAGGGCGGGAGTAGGTTTTGTTGATAAGTTTATCGATGATGCCTGG
TCTGATGGTGCCGCCGAGGCGGTGAGCTTTCCCACCCTCTATATGCAGAG
ACGACCCTGGCCGTGTTATAGTCCTAACTCGCGATTCCTCGTTTTCGCTC
CCTCTCCCTTCCCTGCTTCAGACGACCCGCATCCTTACGGCCCTCCAACT
CTCCAGCAGCCCAACCTGTCTTTTCCTCCCTCCTCCCAGCCAGCACCTCA
CCTACCTACCCTTCAGCTTAGCACAGCACTTAGGTTATTTCTCTTATGGT
CGACGCGTGCGCTTGTCTGGATGGCTTGGTATTGGAGTTCTTCGTCGATG
GGTGGGACGTGGACGCGTTCAAGGACCGCAGCAGAATTTGGAACGATGAC
GGGCGGGCCTTGGCTCTGCTAGTTTGCTTGGGAGCTGAGCTGAATGGAAT
GGAGATAGAAGTGAGCGAAAGCTTGTCAATGCAAGCATATTGAGGATGTT
CGGTGTCAACACATATGTGTAATTGTGGTTTATACCAATGCACAGACACG
AGGCGGCGAGAGCCGTTGCCTCCTGACAATTCCTTCCTCAGCCTCCCCAC
CCCATCCCCACCCCCCCATACCTCCAGTGGATATCTGTGTGAAATTTATC
CACACAAGCGCAAAATGGACGACGGGAGGGATTGGAAGAATGACGGCAGA
AGCCAGGAGCCGGCCTTCATGTCACCTCCTGCAGGACGATGCGACACTCA
ACCCCCCCTCCAAAAATACTCCGCTAAACGCTTCACTGGCTGTCAAGATA
GATGGCTATCGCAGGACAAGGACGAGGACAAGGAAGACAAGGAAGAGGAG
GAGGAAAATGCCTGGGATGCTATGGACCGAGAAACCGAGGCCTTGATAAT
GAGAGAGCTGCGCAAGGACGAGGAGTCTCTTTATGACGATGCCGCTGCCT
CCGCACCCATTCCAAGACCGACTACACCTTCGGAAGCTGAGATCTTACTA
CCGACTTACAATAACAACGATAGCAATGATGACCCTGAGGCTCAGTTCTG
GGCCATGCATCGCGCGCAGCAGGCGGAGACGGAGCGCAAAGCCTTGGAGA
AGGAGGCTAATTTCATCAGGGAGTGGTGTTCTGCATTTGTCCATCTACGA
GTGGTTGGCCAAACAATCCCTCCTCCTCCTTTTTACCCTCCGCCTCCTCC
ATCTAAATTTGAAGATAAAGTGGAGATACTTGCGAGTCACGGCAATGGCG
GCCAGGCGGATAATTTGGGCCATGGGGGTCATCCAAATCGTCAGGCACGC
AAGCCACTCGGGGGGAACAACAGCTGCAGCACATCAACTGAAACAAAAGT
GGATGAAGAGACGATCTCAGTCCAGCGCGAGGAGCTTCTAGCGAGGCTGC
TGGAGGGCGTGTGGCAAGACTGGCTTACTCTGCTCGAGAAACCCCTGGCA
CAGATGATGACACAAAAGGATTTCAACGAGCATATAAGATGTGACCAAGA
AAGACAAATTAGTCGAGGAGAGGGAAAAATGTGTGTAGAAGGCCATTGCA
GTAGTGGGGCAGCCACGACATCGCCCAAACGGAAGTTGAACACGTAAGAA
GAGAACAGAGGAGGCACAACCACATAAAAATGCATATGATTGGT

protein sequence of NO01G03460.1

>NO01G03460.1-protein ID=NO01G03460.1-protein|Name=NO01G03460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MCNCGLYQCTDTRRREPLPPDNSFLSLPTPSPPPHTSSGYLCEIYPHKRK
MDDGRDWKNDGRSQEPAFMSPPAGRCDTQPPLQKYSAKRFTGCQDRWLSQ
DKDEDKEDKEEEEENAWDAMDRETEALIMRELRKDEESLYDDAAASAPIP
RPTTPSEAEILLPTYNNNDSNDDPEAQFWAMHRAQQAETERKALEKEANF
IREWCSAFVHLRVVGQTIPPPPFYPPPPPSKFEDKVEILASHGNGGQADN
LGHGGHPNRQARKPLGGNNSCSTSTETKVDEETISVQREELLARLLEGVW
QDWLTLLEKPLAQMMTQKDFNEHIRCDQERQISRGEGKMCVEGHCSSGAA
TTSPKRKLNT*

mRNA from alignment at chr1:902936..906317-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G03460.1 ID=NO01G03460.1|Name=NO01G03460.1|organism=Nannochloropsis oceanica|type=mRNA|length=3382bp|location=Sequence derived from alignment at chr1:902936..906317- (Nannochloropsis oceanica)
TCTTTTACATTGATTTTTTCGTTCATTTCTTTCCCTGTCAACACATAAAC
AGAAATTTGTACACCTTATCTCTTTCATGACGTATCGAACTACACTGATT
TAGATCGCACCTTGGTATGCTGAGGCCGTGCTCTCACTGCTCGTCGATGG
CGTGGTCGCCGCTTCGATTGGCGTATAAATCCCCATCAATCCCAATACCC
CCTTTCCTCCCTGTGCATCCCTCCCCTCCTTCACCACCACATTCATCCAC
GGATGCTGCTGTTGCTGCTGCCTTCCTCCCTTTCTTCCCGCCCCAAATCC
CCTCCCTCCTCCTCCTCTTCCATCACTGCTCCCATTCAACTTATAAAATG
CACTGGCCAGGGCAGCAGAGTGGCTGGCCCTGTCATACACATTACCAGCA
CCACCTCCTGTGCCTCCTTGGCCGTTTCCCGGCTGCCCGCTCCCAATTTT
AGTGTAGGGTACACTGTCTAAATAAGGGTAGGCAGAGGAGAGATGATGTG
ACGCCATGCCACTGCCGGACTTACGCTTGTGCAGCACCGCTAAAATGACG
ATGGAGGGTAGAAGCTCCCAGAGAGGGTAGAGAAGGGCATCGAAGACATC
CGCGTTTATTTGAGGTGGGTAACCAGCGGCAGCTACCCAGGTGGACAACA
ACCCCGACGCCACTCCCAGATAATATGCCACGTGCACGAAAAACGCCAGC
CCACACAAGACGCACAATGCAATCAACCGTCGTCGCACCACATAAGGCAG
GGCCATCTTGGAAAATCTAAAGGCGTACTTGAACCAAATCAAGGTCCACA
GTATATACGACACTCCCAACAGAACAAACAGTGCCTGCAGCACTTGCCCA
CCGCTCAACACTCGACTCCCCCCCATGATCACAATCAGCAGAAAACCTAC
ATACAACAGTCCATTACTAATCAGAAAGGCAGGTCTTAGCCGAGGGAAAG
GGGCTCCTGTGGCGGTGTGACTGAGCTGGGCCCAAAAAAGGATGAGCAAG
CCGTAGGTGGTAAGGAAGAAGAGATCAGGAACTGTGCGGACCAGAGCACA
GGTCCACGAGCTAGGGCAGCTGTATTCCGCGAACAGCAGTGTTTCCGCCA
GGAGGCAGATGCATCTGGTTGGGGGTGAGGGGAGTGGGTGGTCGCGGGGG
GGAAGGGAGGGGGAGGTAGGTGAGCATGTTCAAAAGCCACGAAAGAAGCA
GGGCAAATTGCGCGACATTCCAGATCAGCCATGATGATTTCAACGTGACG
GAATTACAATAAGAACGAGGGCATTATAGAGCACACACAAACACAAGCAA
GCCAAAGCCCCAAACACCACTCAGGAGGCATCACTCTGTTTTACAAGGAC
ATATACAACGCTGCTCCCACCGCTCTCCAGCAGCTTCGACGACACGTCTG
CACTTTCCACAATCCCTTCAACCCTGCGCATCCTCGCCTTTTTTCCGCCT
TACCTTGCCACATTAGCCACGAGGAGCAAGAGGTGGATCCGTCGTCTCAT
CTCAGTCCCCGCACTCGAAGTGGCCGCATCGACATCCTCCTTTGACCGCA
CGATCTCTAAAAGACACAGACCAGCAGCACCGAGAAAAAGGCCTGCGTCT
GGTAGGAGTAGCCTTTCTCTCATTATTTATGTGTTGGTGCGCCCTGTGTG
GTTATAGGGCGGGAGTAGGTTTTGTTGATAAGTTTATCGATGATGCCTGG
TCTGATGGTGCCGCCGAGGCGGTGAGCTTTCCCACCCTCTATATGCAGAG
ACGACCCTGGCCGTGTTATAGTCCTAACTCGCGATTCCTCGTTTTCGCTC
CCTCTCCCTTCCCTGCTTCAGACGACCCGCATCCTTACGGCCCTCCAACT
CTCCAGCAGCCCAACCTGTCTTTTCCTCCCTCCTCCCAGCCAGCACCTCA
CCTACCTACCCTTCAGCTTAGCACAGCACTTAGGTTATTTCTCTTATGGT
CGACGCGTGCGCTTGTCTGGATGGCTTGGTATTGGAGTTCTTCGTCGATG
GGTGGGACGTGGACGCGTTCAAGGACCGCAGCAGAATTTGGAACGATGAC
GGGCGGGCCTTGGCTCTGCTAGTTTGCTTGGGAGCTGAGCTGAATGGAAT
GGAGATAGAAGTGAGCGAAAGCTTGTCAATGCAAGCATATTGAGGATGTT
CGGTGTCAACACATATGTGTAATTGTGGTTTATACCAATGCACAGACACG
AGGCGGCGAGAGCCGTTGCCTCCTGACAATTCCTTCCTCAGCCTCCCCAC
CCCATCCCCACCCCCCCATACCTCCAGTGGATATCTGTGTGAAATTTATC
CACACAAGCGCAAAATGGACGACGGGAGGGATTGGAAGAATGACGGCAGA
AGCCAGGAGCCGGCCTTCATGTCACCTCCTGCAGGACGATGCGACACTCA
ACCCCCCCTCCAAAAATACTCCGCTAAACGCTTCACTGGCTGTCAAGATA
GATGGCTATCGCAGGACAAGGACGAGGACAAGGAAGACAAGGAAGAGGAG
GAGGAAAATGCCTGGGATGCTATGGACCGAGAAACCGAGGCCTTGATAAT
GAGAGAGCTGCGCAAGGACGAGGAGTCTCTTTATGACGATGCCGCTGCCT
CCGCACCCATTCCAAGACCGACTACACCTTCGGAAGCTGAGATCTTACTA
CCGACTTACAATAACAACGATAGCAATGATGACCCTGAGGCTCAGTTCTG
GGCCATGCATCGCGCGCAGCAGGCGGAGACGGAGCGCAAAGCCTTGGAGA
AGGAGGCTAATTTCATCAGGGAGTGGTGTTCTGCATTTGTCCATCTACGA
GTGGTTGGCCAAACAATCCCTCCTCCTCCTTTTTACCCTCCGCCTCCTCC
ATCTAAATTTGAAGATAAAGTGGAGATACTTGCGAGGTAAAAATTAGTGA
TAGTGTTGTGTAAGCGATTTGGCACTCATGTAGTGCCACGATTCTCACGT
ACATACATACATACATACACACAGTCACGGCAATGGCGGCCAGGCGGATA
ATTTGGGCCATGGGGGTCATCCAAATCGTCAGGCACGCAAGCCACTCGGG
GGGAACAACAGCTGCAGCACATCAACTGAAACAAAAGTGGATGAAGAGAC
GATCTCAGTCCAGCGCGAGGAGCTTCTAGCGAGGCTGCTGGAGGGCGTGT
GGCAAGACTGGCTTACTCTGCTCGAGAAACCCCTGGCACAGATGATGACA
CAAAAGGATTTCAACGAGCATATAAGATGTGACCAAGAAAGACAAATTAG
TCGAGGAGAGGGAAAAATGTGTGTAGAAGGCCATTGCAGTAGTGGGGCAG
CCACGACATCGCCCAAACGGAAGTTGAACACGTAAGAAGAGAACAGAGGA
GGCACAACCACATAAAAATGCATATGATTGGT

Coding sequence (CDS) from alignment at chr1:902936..906317-

>NO01G03460.1 ID=NO01G03460.1|Name=NO01G03460.1|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at chr1:902936..906317- (Nannochloropsis oceanica)
ATGTGTAATTGTGGTTTATACCAATGCACAGACACGAGGCGGCGAGAGCC
GTTGCCTCCTGACAATTCCTTCCTCAGCCTCCCCACCCCATCCCCACCCC
CCCATACCTCCAGTGGATATCTGTGTGAAATTTATCCACACAAGCGCAAA
ATGGACGACGGGAGGGATTGGAAGAATGACGGCAGAAGCCAGGAGCCGGC
CTTCATGTCACCTCCTGCAGGACGATGCGACACTCAACCCCCCCTCCAAA
AATACTCCGCTAAACGCTTCACTGGCTGTCAAGATAGATGGCTATCGCAG
GACAAGGACGAGGACAAGGAAGACAAGGAAGAGGAGGAGGAAAATGCCTG
GGATGCTATGGACCGAGAAACCGAGGCCTTGATAATGAGAGAGCTGCGCA
AGGACGAGGAGTCTCTTTATGACGATGCCGCTGCCTCCGCACCCATTCCA
AGACCGACTACACCTTCGGAAGCTGAGATCTTACTACCGACTTACAATAA
CAACGATAGCAATGATGACCCTGAGGCTCAGTTCTGGGCCATGCATCGCG
CGCAGCAGGCGGAGACGGAGCGCAAAGCCTTGGAGAAGGAGGCTAATTTC
ATCAGGGAGTGGTGTTCTGCATTTGTCCATCTACGAGTGGTTGGCCAAAC
AATCCCTCCTCCTCCTTTTTACCCTCCGCCTCCTCCATCTAAATTTGAAG
ATAAAGTGGAGATACTTGCGAGTCACGGCAATGGCGGCCAGGCGGATAAT
TTGGGCCATGGGGGTCATCCAAATCGTCAGGCACGCAAGCCACTCGGGGG
GAACAACAGCTGCAGCACATCAACTGAAACAAAAGTGGATGAAGAGACGA
TCTCAGTCCAGCGCGAGGAGCTTCTAGCGAGGCTGCTGGAGGGCGTGTGG
CAAGACTGGCTTACTCTGCTCGAGAAACCCCTGGCACAGATGATGACACA
AAAGGATTTCAACGAGCATATAAGATGTGACCAAGAAAGACAAATTAGTC
GAGGAGAGGGAAAAATGTGTGTAGAAGGCCATTGCAGTAGTGGGGCAGCC
ACGACATCGCCCAAACGGAAGTTGAACACGTAA

Synonyms

Publications