NO01G03430.1, NO01G03430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03430.1
Unique NameNO01G03430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1272
Alignment locationchr1:895950..897439 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:895950..897439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G03430.1 vs.
Match: EWM29274.1 (Fe-S metabolism associated domain, SufE-like protein [Nannochloropsis gaditana])

HSP 1 Score: 450.7 bits (1158), Expect = 3.700e-123
Identity = 240/312 (76.92%), Postives = 270/312 (86.54%), Query Frame = 0 
Query:    1 MRPLSPVPLQLGL---VLLLIVALARVTQGFVVVVPRQQVGRPSCRQ------TVVSMSSTEIDESSLGLTPRLLEVSRAFQLMDERTRVQHLLAMAGALKPFKDFRKLPENKVPGCLSTVYVHAYLKEGKVYFEGDSDAQLTKGLVALLIEGMSGCESHEIQAVKPEFIKFAGIAASLTPGRNNGFLNMLAMLKRKAVEAEAKGEGTGQEEPEIEFEEIITRPVYSSTMKKLINFLKPKQLILTDDSAQHAGHAGAKGLDGESHFSLKIVADCFEGLSLVQRHKLIYTVLTAEMQQIHALSIDAKTPAEAG 304
            MR  S V  ++G    VL+L+++++ V +GF+V   R Q+  P+  Q      T   MSST+IDESSLGLTPRLLEVSRAFQLMDERTRVQ+LLA+A ++KP KDFRKL ENKVPGCLSTVYVHA++++GKVYFEGDSDAQLTKGLVALLIEGMSGC + EIQAVKPEFIK+AGIAASLTPGRNNGFLNMLAMLKRKAVEAE+KGEG GQEEP +EF+E I RPVYSS MKKLINFLKPK+L + DDSAQHAGHAGAKGL GESHFSL+IVADCFEGLSLVQRHKL+YTVL AEMQQIHALSIDAKTPAEAG
Sbjct:    1 MRLSSTVKDKMGTAQAVLILLISISLV-KGFLVG-HRHQLRVPTSSQRTQGAKTTTYMSSTDIDESSLGLTPRLLEVSRAFQLMDERTRVQNLLALASSMKPMKDFRKLSENKVPGCLSTVYVHAFMQDGKVYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGAGQEEPAVEFQEDIARPVYSSCMKKLINFLKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQIHALSIDAKTPAEAG 310
The following BLAST results are available for this feature:
BLAST of NO01G03430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29274.13.700e-12376.92Fe-S metabolism associated domain, SufE-like prote... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03430NO01G03430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03430.1NO01G03430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03430.1.cds1NO01G03430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03430.1.cds2NO01G03430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03430.1 ID=NO01G03430.1|Name=NO01G03430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1272bp
ACAGTCGCTCCTGTGCCGTCTACCTCCTCACCCCCACCTTCATCCAAGAA
CAAGAGAATGCGACCGCTCTCACCCGTCCCACTGCAACTAGGCCTCGTCC
TCCTCCTCATCGTGGCGCTGGCAAGAGTCACGCAGGGCTTTGTCGTGGTG
GTGCCGAGGCAGCAGGTGGGAAGGCCGTCATGTAGGCAGACTGTTGTGTC
CATGTCCTCCACCGAGATTGACGAAAGCAGTTTGGGTCTCACTCCCCGTT
TGCTTGAGGTCTCCCGTGCCTTTCAGCTGATGGACGAACGCACGCGCGTG
CAGCACTTGTTGGCCATGGCGGGTGCACTCAAGCCTTTTAAGGACTTCCG
GAAGCTGCCTGAGAATAAGGTGCCCGGGTGCTTGTCCACAGTGTATGTGC
ATGCGTACTTGAAGGAGGGCAAGGTCTATTTCGAGGGGGATTCAGACGCG
CAATTGACCAAGGGATTGGTGGCGTTGTTGATTGAGGGGATGTCGGGATG
TGAGTCGCATGAAATTCAGGCGGTGAAGCCGGAATTTATTAAGTTCGCGG
GGATCGCGGCGAGTTTGACGCCTGGCCGCAACAACGGCTTCCTCAACATG
CTTGCCATGCTCAAACGCAAGGCCGTTGAAGCCGAGGCAAAGGGGGAGGG
CACAGGCCAGGAAGAGCCCGAAATCGAATTCGAAGAAATCATCACCAGGC
CTGTCTACAGCAGCACCATGAAAAAACTTATCAATTTCTTAAAGCCGAAA
CAACTAATCCTCACCGACGATTCGGCTCAGCACGCCGGGCATGCAGGTGC
AAAGGGCTTGGACGGTGAGAGTCATTTTAGTCTCAAAATTGTGGCGGACT
GCTTCGAGGGCCTTTCGTTGGTGCAACGGCACAAGTTGATTTACACGGTT
TTAACGGCCGAGATGCAGCAGATCCATGCCTTGTCGATTGATGCTAAGAC
CCCTGCCGAGGCAGGATTGTAGTGGAGGGGAAGGAGAGGGAGGGAGGGAG
GAAGTGAGGAAAAGGAGAGTGAGAGGGAGAAAAGGGGACGGGGGGAGGAG
AATAGGAGGATGTCTTGAAAGTATATCTTTATAAAACTCATGCACGGTTT
CTGTGCGTTTCGTAAGAACGGCATCCAATGGCCTAATTTTGAACAGATAG
AAGAGAAAGGCACAGGCTGGAATGGAGGAACTGAAAGAAGGGAAGAAGAG
AGACGCCAAAACTTGACATGGTAGGCATGGCGCGTAGGCCTGGGGGAGAT
GACGCAGCTCGCGTTGAATGGC
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protein sequence of NO01G03430.1

>NO01G03430.1-protein ID=NO01G03430.1-protein|Name=NO01G03430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MRPLSPVPLQLGLVLLLIVALARVTQGFVVVVPRQQVGRPSCRQTVVSMS
STEIDESSLGLTPRLLEVSRAFQLMDERTRVQHLLAMAGALKPFKDFRKL
PENKVPGCLSTVYVHAYLKEGKVYFEGDSDAQLTKGLVALLIEGMSGCES
HEIQAVKPEFIKFAGIAASLTPGRNNGFLNMLAMLKRKAVEAEAKGEGTG
QEEPEIEFEEIITRPVYSSTMKKLINFLKPKQLILTDDSAQHAGHAGAKG
LDGESHFSLKIVADCFEGLSLVQRHKLIYTVLTAEMQQIHALSIDAKTPA
EAGL*
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mRNA from alignment at chr1:895950..897439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03430.1 ID=NO01G03430.1|Name=NO01G03430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1490bp|location=Sequence derived from alignment at chr1:895950..897439- (Nannochloropsis oceanica)
ACAGTCGCTCCTGTGCCGTCTACCTCCTCACCCCCACCTTCATCCAAGAA
CAAGAGAATGCGACCGCTCTCACCCGTCCCACTGCAACTAGGCCTCGTCC
TCCTCCTCATCGTGGCGCTGGCAAGAGTCACGCAGGGCTTTGTCGTGGTG
GTGCCGAGGCAGCAGGTGGGAAGGCCGTCATGTAGGCAGACTGTTGTGTC
CATGTCCTCCACCGAGATTGACGAAAGCAGTTTGGGTCTCACTCCCCGTT
TGCTTGAGGTCTCCCGTGCCTTTCAGCTGATGGACGAACGCACGCGCGTG
CAGCACTTGTTGGCCATGGCGGGTGCACTCAAGCCTTTTAAGGACTTCCG
GAAGCTGCCTGAGAATAAGGTGCCCGGGTGCTTGTCCACAGTGTATGTGC
ATGCGTACTTGAAGGAGGGCAAGGTCTATTTCGAGGGGGATTCAGACGCG
CAATTGACCAAGGGATTGGTGGCGTTGTTGATTGAGGGGATGTCGGGATG
TGAGTCGCATGAAATTCAGGCGGTGAAGCCGGAATTTATTAAGTTCGCGG
GGATCGCGGCGAGTTTGACGCCTGGGTGAGTCATTTGTGAGAGGGGAGGG
AAAGGGGGGTAGGGGTAGTAATGCAGGAATACTGATGATAAAAAAGAGAT
TCATGGAAGAGAAGAGACAGAAGGTCTTGACACTCTTCGTCACTGAATGT
ACTGATTAATCTAGGTCTTGAGGCCAAAGGAAAAGAACATGTTGCTCACT
TTTCCTTCGTGCCCCTCCCTCACTCTTTTCCCCTCCGCCACAGCCGCAAC
AACGGCTTCCTCAACATGCTTGCCATGCTCAAACGCAAGGCCGTTGAAGC
CGAGGCAAAGGGGGAGGGCACAGGCCAGGAAGAGCCCGAAATCGAATTCG
AAGAAATCATCACCAGGCCTGTCTACAGCAGCACCATGAAAAAACTTATC
AATTTCTTAAAGCCGAAACAACTAATCCTCACCGACGATTCGGCTCAGCA
CGCCGGGCATGCAGGTGCAAAGGGCTTGGACGGTGAGAGTCATTTTAGTC
TCAAAATTGTGGCGGACTGCTTCGAGGGCCTTTCGTTGGTGCAACGGCAC
AAGTTGATTTACACGGTTTTAACGGCCGAGATGCAGCAGATCCATGCCTT
GTCGATTGATGCTAAGACCCCTGCCGAGGCAGGATTGTAGTGGAGGGGAA
GGAGAGGGAGGGAGGGAGGAAGTGAGGAAAAGGAGAGTGAGAGGGAGAAA
AGGGGACGGGGGGAGGAGAATAGGAGGATGTCTTGAAAGTATATCTTTAT
AAAACTCATGCACGGTTTCTGTGCGTTTCGTAAGAACGGCATCCAATGGC
CTAATTTTGAACAGATAGAAGAGAAAGGCACAGGCTGGAATGGAGGAACT
GAAAGAAGGGAAGAAGAGAGACGCCAAAACTTGACATGGTAGGCATGGCG
CGTAGGCCTGGGGGAGATGACGCAGCTCGCGTTGAATGGC
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Coding sequence (CDS) from alignment at chr1:895950..897439-

>NO01G03430.1 ID=NO01G03430.1|Name=NO01G03430.1|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr1:895950..897439- (Nannochloropsis oceanica)
ATGCGACCGCTCTCACCCGTCCCACTGCAACTAGGCCTCGTCCTCCTCCT
CATCGTGGCGCTGGCAAGAGTCACGCAGGGCTTTGTCGTGGTGGTGCCGA
GGCAGCAGGTGGGAAGGCCGTCATGTAGGCAGACTGTTGTGTCCATGTCC
TCCACCGAGATTGACGAAAGCAGTTTGGGTCTCACTCCCCGTTTGCTTGA
GGTCTCCCGTGCCTTTCAGCTGATGGACGAACGCACGCGCGTGCAGCACT
TGTTGGCCATGGCGGGTGCACTCAAGCCTTTTAAGGACTTCCGGAAGCTG
CCTGAGAATAAGGTGCCCGGGTGCTTGTCCACAGTGTATGTGCATGCGTA
CTTGAAGGAGGGCAAGGTCTATTTCGAGGGGGATTCAGACGCGCAATTGA
CCAAGGGATTGGTGGCGTTGTTGATTGAGGGGATGTCGGGATGTGAGTCG
CATGAAATTCAGGCGGTGAAGCCGGAATTTATTAAGTTCGCGGGGATCGC
GGCGAGTTTGACGCCTGGCCGCAACAACGGCTTCCTCAACATGCTTGCCA
TGCTCAAACGCAAGGCCGTTGAAGCCGAGGCAAAGGGGGAGGGCACAGGC
CAGGAAGAGCCCGAAATCGAATTCGAAGAAATCATCACCAGGCCTGTCTA
CAGCAGCACCATGAAAAAACTTATCAATTTCTTAAAGCCGAAACAACTAA
TCCTCACCGACGATTCGGCTCAGCACGCCGGGCATGCAGGTGCAAAGGGC
TTGGACGGTGAGAGTCATTTTAGTCTCAAAATTGTGGCGGACTGCTTCGA
GGGCCTTTCGTTGGTGCAACGGCACAAGTTGATTTACACGGTTTTAACGG
CCGAGATGCAGCAGATCCATGCCTTGTCGATTGATGCTAAGACCCCTGCC
GAGGCAGGATTGTAG
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Synonyms
Publications