NO01G03410.2, NO01G03410.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03410.2
Unique NameNO01G03410.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2212
Alignment locationchr1:891593..894706 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:891593..894706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03410.2 vs.
Match: EWM29258.1 (mitochondrial carrier [Nannochloropsis gaditana])

HSP 1 Score: 440.7 bits (1132), Expect = 5.500e-120
Identity = 229/279 (82.08%), Postives = 244/279 (87.46%), Query Frame = 0 
Query:   54 PGSFRSKTMMKLLRLPLAVAVLALASCWLGEGVHALKPVPSKTAVKTIPPPPARKADVSHKLNTFDMMIAGGFATAMGDLAMHPIDTIKTVQQAAPAGLSIVKACGKILKDMGPIGFYAGVVPYVTMDGLSGAIKFATYEWGKKLVAPILPPALHAYSHFVCAAGAFISCSVVMVPGELLKQRLQAGVVPSMVGGIKQIWKTEGLPGFFTGYKATLIRDVPYTMLELGLYENFKTLLKKYRKREELTTLEELSAAAVTGGLVGLLTNPLDLVKTRLMTG 333
            P   R+ TM  L R  L + VLAL +  L   V AL   P+K+ +K IP P ARKADV+HKLNT DMMIAGG ATA+GDLAMHPIDTIKTVQQAAPAGLSI KAC KILK+MGPIGFYAGVVPY TMDGLSGAIKFATYEWGKKLVAP+LP ALHAYSHFVCAAGAF+SCSVVMVPGEL+KQRLQAGVVP+MV GIKQ+WKTEGLPGFF GYKATLIRDVPYTMLELGLYENFKTL+KKYRKREELTT EEL AAAVTGGLVGLLTNPLDLVKTRLMTG
Sbjct:   71 PSFARTMTMTGLHRPLLLLIVLALYA--LENQVRALPAAPAKS-LKVIPAPSARKADVTHKLNTIDMMIAGGVATAIGDLAMHPIDTIKTVQQAAPAGLSIFKACSKILKEMGPIGFYAGVVPYATMDGLSGAIKFATYEWGKKLVAPVLPSALHAYSHFVCAAGAFLSCSVVMVPGELVKQRLQAGVVPNMVDGIKQMWKTEGLPGFFVGYKATLIRDVPYTMLELGLYENFKTLIKKYRKREELTTYEELGAAAVTGGLVGLLTNPLDLVKTRLMTG 346
The following BLAST results are available for this feature:
BLAST of NO01G03410.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29258.15.500e-12082.08mitochondrial carrier [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03410NO01G03410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03410.2NO01G03410.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03410.2.cds1NO01G03410.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03410.2.cds2NO01G03410.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03410.2.cds3NO01G03410.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03410.2.cds4NO01G03410.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03410.2.cds5NO01G03410.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03410.2.cds6NO01G03410.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03410.2.cds7NO01G03410.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03410.2 ID=NO01G03410.2|Name=NO01G03410.2|organism=Nannochloropsis oceanica|type=mRNA|length=2212bp
CCGCTCCTACACGCCGCAGGGTCGACATGCTTCTGACCCAGCCATGGGAA
TAAGTTGGGGGATGGAAAAAAGGATATAAATTGGTGACAGACATTCACGA
AGCAGCTGCGTGTGTTGTTGGAGAGAGTCGGAGGAAAAGGACATGCGGCC
CGGGCAAGACGCAGCTCGATGGCTCTCCAAGAAGCCTCAGGAGGCTCGCC
ATTTCTGTCCCCTTCCTCCTCCAAAACCTGCCCACCCACTCCCTTTACAC
GACGCACAGCGCACAACCAAGGCGTTCGCAGCATCCCAGACGTCCGTTGC
CTTTGCCTGTCTGTCTCGCCTGTTTGCCCAGGCAGCTTTCGCTCCAAGAC
GATGATGAAGCTGCTCAGGTTGCCCCTCGCCGTCGCCGTCCTGGCCTTGG
CCTCATGCTGGTTGGGCGAAGGCGTGCATGCCCTTAAGCCCGTCCCTTCC
AAGACTGCCGTCAAGACCATACCCCCTCCTCCTGCGCGCAAGGCAGACGT
CAGCCATAAGCTCAATACCTTCGACATGATGATTGCGGGTGGCTTTGCAA
CGGCCATGGGCGACCTGGCCATGCACCCCATCGATACCATCAAGACGGTC
CAACAGGCGGCGCCTGCGGGCCTGAGCATCGTCAAGGCCTGTGGCAAGAT
TCTAAAGGACATGGGGCCAATAGGCTTTTATGCAGGTGTGGTGCCTTACG
TGACGATGGATGGGTTGTCCGGTGCCATTAAGTTCGCAACATACGAGTGG
GGAAAGAAGCTAGTAGCGCCTATTCTACCACCTGCATTGCATGCTTACTC
GCACTTCGTGTGTGCAGCGGGTGCTTTCATTTCGTGCTCCGTGGTGATGG
TACCCGGCGAGTTGCTCAAGCAACGGTTGCAGGCGGGCGTGGTCCCCAGT
ATGGTGGGCGGCATCAAGCAGATCTGGAAGACGGAGGGTTTGCCTGGCTT
CTTCACAGGTTACAAGGCCACCCTTATCCGCGACGTGCCCTACACCATGC
TCGAGCTTGGCCTCTACGAGAACTTCAAAACACTCCTCAAGAAGTACCGG
AAGCGCGAGGAACTCACCACTCTTGAGGAGCTTAGCGCCGCTGCGGTCAC
CGGGGGCTTGGTCGGTCTCTTAACCAATCCCTTGGACTTAGTCAAGACAC
GCTTGATGACGGGGGTGGGAAAGGGAGGAAGGAAGGGAGGGAGGGAAGGA
GGGAAGGAGGGCAGGGAGGATGAAGGACAGGAATCAGGCAGAGCAATCAC
TGCCTCCATTCCAGTCCTTTCGTGTTCTATAATATCAATGTGTCTTTCTT
CATTGCTAATTGTCCCTCTCTCGTTCCATCTTTGGTGTTGGATCACGTGC
ATACGGCATTTGGTCACCTTTATTCCTCTCTCCCTCTCTTCTTCCCTCTT
TGAAGACGCAATACACGGGCTTCTTCGACGTGGTCCAGAAAATGTACAAG
ATGGAAGGCGGCGTCAATGCCTTCATGTCTGGCTCTAGCGCACGCGTGTT
GTGGCTGTTGCCATTCACGGTAATTCATTTGGGTGTTTATGAGATGTCTA
AGCGCATTCTGGCGGATCTCAAACCGACCGATGCCTTCAAGTGAGCCGTT
GGAAATTGGGAGAAATTGGACCGAGACCTTCGATGGGAGGGGGAAGGGGT
CGATCGAGGGGCAAGTAGAGGAAGTGGAGGAGGAAGAGGAAGAGGAAGAG
AGGACAGGACGACCACGACAAAGACGACTGTAATGAAAGCCTCGGGTGAG
TGATGTTGGTATTACGGTATACATAAAGGAAAATCGGATTCATCGTTGCT
TCCCTCCTTGATTTTGTGTTGGATAATTTCTGGAACTCAGTCAAGTAGGC
TAATATTTGCTGTGGGAGGAGACGTGCTCCCAATTTTGCTGCTTGTGTGC
GTGTTTTGTACACACGAAAAGGCGCGGGAGTGAGGGGCGTGAGAGAAAGG
AGAGAAGAAGACGTAGAAGAAGACGTAGAAGAAGCAGAAGAAGAAAAAAG
TAGGATAGAAGGGGGGCAGTAGTTTTTGCATTCGAATGTTTTAAGTCGCA
TGCTAGGCAGCCAGCGATACCACCACCGCCACCTGACCTGCTCCCCAATA
TTTGTCGAGGAAGGGATCGGTAGGACACGGGCGGCCCAAGAAAGGAAAGG
GAAGACACGAAAGAGCGAAAATAAATCAATGAAAGTGAAAAGAGAACAAG
AAGCTAGCCACA
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protein sequence of NO01G03410.2

>NO01G03410.2-protein ID=NO01G03410.2-protein|Name=NO01G03410.2|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MALQEASGGSPFLSPSSSKTCPPTPFTRRTAHNQGVRSIPDVRCLCLSVS
PVCPGSFRSKTMMKLLRLPLAVAVLALASCWLGEGVHALKPVPSKTAVKT
IPPPPARKADVSHKLNTFDMMIAGGFATAMGDLAMHPIDTIKTVQQAAPA
GLSIVKACGKILKDMGPIGFYAGVVPYVTMDGLSGAIKFATYEWGKKLVA
PILPPALHAYSHFVCAAGAFISCSVVMVPGELLKQRLQAGVVPSMVGGIK
QIWKTEGLPGFFTGYKATLIRDVPYTMLELGLYENFKTLLKKYRKREELT
TLEELSAAAVTGGLVGLLTNPLDLVKTRLMTGVGKGGRKGGREGGKEGRE
DEGQESGRAITASIPVLSCSIISMCLSSLLIVPLSFHLWCWITCIRHLVT
FIPLSLSSSLFEDAIHGLLRRGPENVQDGRRRQCLHVWL*
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mRNA from alignment at chr1:891593..894706-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03410.2 ID=NO01G03410.2|Name=NO01G03410.2|organism=Nannochloropsis oceanica|type=mRNA|length=3114bp|location=Sequence derived from alignment at chr1:891593..894706- (Nannochloropsis oceanica)
CCGCTCCTACACGCCGCAGGGTCGACATGCTTCTGACCCAGCCATGGGAA
TAAGTTGGGGGATGGAAAAAAGGATATAAATTGGTGACAGACATTCACGA
AGCAGCTGCGTGTGTTGTTGGAGAGAGTCGGAGGAAAAGGACATGCGGCC
CGGGCAAGACGCAGCTCGATGGCTCTCCAAGAAGCCTCAGGAGGCTCGCC
ATTTCTGTCCCCTTCCTCCTCCAAAACCTGCCCACCCACTCCCTTTACAC
GACGCACAGCGCACAACCAAGGCGTTCGCAGCATCCCAGACGTCCGTTGC
CTTTGCCTGTCTGTCTCGCCTGTTTGCCCAGGCAGCTTTCGCTCCAAGAC
GATGATGAAGCTGCTCAGGTTGCCCCTCGCCGTCGCCGTCCTGGCCTTGG
CCTCATGCTGGTTGGGCGAAGGCGTGCATGCCCTTAAGCCCGTCCCTTCC
AAGACTGCCGTCAAGACCATACCCCCTCCTCCTGCGCGCAAGGCAGACGT
CAGCCATAAGCTCAATACCTTCGACATGATGATTGCGGTATGTGCCTCTT
GAAGGGGAGGGCAGGGAGGAGCACTAGTACTCACGCACGGCCCCCGTCTC
ACACACACAGGGTGGCTTTGCAACGGCCATGGGCGACCTGGCCATGCACC
CCATCGATACCATCAAGACGGTCCAACAGGCGGCGCCTGCGGTAAGCGCT
CAGTGGGAGGGTGGGGAGCACAGAGGCGATGGCAATTGACCTCCCCATCC
TTCTCCTTCCATCTTCATCATTTGCCACCACAAATACAGGGCCTGAGCAT
CGTCAAGGCCTGTGGCAAGATTCTAAAGGACATGGGGCCAATAGGCTTTT
ATGCAGGTAAGTTTAAATTACCCCTATTTGCACACTCCCTTTTCCTCCTC
GTCACCTCCCCCCCCGCGGACCTTCCCTCCCTCCTTTTCATATCAGGTGT
GGTGCCTTACGTGACGATGGATGGGTTGTCCGGTGCCATTAAGTTCGCAA
CATACGAGTGGGGAAAGAAGCTAGTAGCGCCTATTCTACCACCTGCATTG
CATGCTTACTCGCACTTCGTGTGTGCAGCGGGTGCTTTCATTTCGTGCTC
CGTGGTGATGGTACCCGGCGAGTTGCTCAAGCAACGGTTGCAGGTAGGTA
GGGTTGGAGGGGTAATGTAAAGATAGAAGAAGCGGGTGTAAGCGTGGGCC
ATTCATATGATAACGGTGTACGGAGAGACTATGTAAAAAGTATTGCCCCC
TCGCCCTGCTCGCGCTTCTCCTGATGTAGACGTCCTTTCATCTCATCCTC
CTCCTCCTATTCACCTTCCTCCTTCTTTTTCTTTTCTCTGCTCCAGGCGG
GCGTGGTCCCCAGTATGGTGGGCGGCATCAAGCAGATCTGGAAGACGGAG
GGTTTGCCTGGCTTCTTCACAGGTTACAAGTACGTGAGCTATTTCCCCAC
ACATTACGACACGACGAACACAATTACCAAAATCACAATAATCACCACCA
TTACAGTTATGTGGATAAGAAGAAAAGATCTTCCCCCCGCGTATACTTAC
GTGCCATCGCTTCTCTCACTCCTATCCTCCCTCCTCCCCCCCTCCTATAT
GCATTTAGGGCCACCCTTATCCGCGACGTGCCCTACACCATGCTCGAGCT
TGGCCTCTACGAGAACTTCAAAACACTCCTCAAGAAGTACCGGAAGCGCG
AGGTAAGTTTCCTCTTCGCCCCCTCCCTCCCTCCCTCTCTCCTTCCTCCC
TCAAAGAGATGTTATTTATTCCACCCTGCCTGCCCTTCCCTCCCTCCTTC
CCTTCCTAGGAACTCACCACTCTTGAGGAGCTTAGCGCCGCTGCGGTCAC
CGGGGGCTTGGTCGGTCTCTTAACCAATCCCTTGGACTTAGTCAAGACAC
GCTTGATGACGGGGGTGGGAAAGGGAGGAAGGAAGGGAGGGAGGGAAGGA
GGGAAGGAGGGCAGGGAGGATGAAGGACAGGAATCAGGCAGAGCAATCAC
TGCCTCCATTCCAGTCCTTTCGTGTTCTATAATATCAATGTGTCTTTCTT
CATTGCTAATTGTCCCTCTCTCGTTCCATCTTTGGTGTTGGATCACGTGC
ATACGGCATTTGGTCACCTTTATTCCTCTCTCCCTCTCTTCTTCCCTCTT
TGAAGACGCAATACACGGGCTTCTTCGACGTGGTCCAGAAAATGTACAAG
ATGGAAGGCGGCGTCAATGCCTTCATGTCTGGCTCTAGCGCACGCGTGTT
GTGGCTGTTGCCATTCACGGTAATTCATTTGGGTGTTTATGAGAGTACGT
ACGGAGGGAGAGAGGGAGGGAGGGAGGGATCGATTATTTGTCACACGGAA
TGTGTGCGGGGTTTAAGTGGAAGATACAAACTTGGTCTGATTTTTCTTTG
CTTCTTTTCTCGTTCTCTGTACTTGCGATGTCGTATCGCAACACAGTGTC
TAAGCGCATTCTGGCGGATCTCAAACCGACCGATGCCTTCAAGTGAGCCG
TTGGAAATTGGGAGAAATTGGACCGAGACCTTCGATGGGAGGGGGAAGGG
GTCGATCGAGGGGCAAGTAGAGGAAGTGGAGGAGGAAGAGGAAGAGGAAG
AGAGGACAGGACGACCACGACAAAGACGACTGTAATGAAAGCCTCGGGTG
AGTGATGTTGGTATTACGGTATACATAAAGGAAAATCGGATTCATCGTTG
CTTCCCTCCTTGATTTTGTGTTGGATAATTTCTGGAACTCAGTCAAGTAG
GCTAATATTTGCTGTGGGAGGAGACGTGCTCCCAATTTTGCTGCTTGTGT
GCGTGTTTTGTACACACGAAAAGGCGCGGGAGTGAGGGGCGTGAGAGAAA
GGAGAGAAGAAGACGTAGAAGAAGACGTAGAAGAAGCAGAAGAAGAAAAA
AGTAGGATAGAAGGGGGGCAGTAGTTTTTGCATTCGAATGTTTTAAGTCG
CATGCTAGGCAGCCAGCGATACCACCACCGCCACCTGACCTGCTCCCCAA
TATTTGTCGAGGAAGGGATCGGTAGGACACGGGCGGCCCAAGAAAGGAAA
GGGAAGACACGAAAGAGCGAAAATAAATCAATGAAAGTGAAAAGAGAACA
AGAAGCTAGCCACA
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Coding sequence (CDS) from alignment at chr1:891593..894706-

>NO01G03410.2 ID=NO01G03410.2|Name=NO01G03410.2|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr1:891593..894706- (Nannochloropsis oceanica)
ATGGCTCTCCAAGAAGCCTCAGGAGGCTCGCCATTTCTGTCCCCTTCCTC
CTCCAAAACCTGCCCACCCACTCCCTTTACACGACGCACAGCGCACAACC
AAGGCGTTCGCAGCATCCCAGACGTCCGTTGCCTTTGCCTGTCTGTCTCG
CCTGTTTGCCCAGGCAGCTTTCGCTCCAAGACGATGATGAAGCTGCTCAG
GTTGCCCCTCGCCGTCGCCGTCCTGGCCTTGGCCTCATGCTGGTTGGGCG
AAGGCGTGCATGCCCTTAAGCCCGTCCCTTCCAAGACTGCCGTCAAGACC
ATACCCCCTCCTCCTGCGCGCAAGGCAGACGTCAGCCATAAGCTCAATAC
CTTCGACATGATGATTGCGGGTGGCTTTGCAACGGCCATGGGCGACCTGG
CCATGCACCCCATCGATACCATCAAGACGGTCCAACAGGCGGCGCCTGCG
GGCCTGAGCATCGTCAAGGCCTGTGGCAAGATTCTAAAGGACATGGGGCC
AATAGGCTTTTATGCAGGTGTGGTGCCTTACGTGACGATGGATGGGTTGT
CCGGTGCCATTAAGTTCGCAACATACGAGTGGGGAAAGAAGCTAGTAGCG
CCTATTCTACCACCTGCATTGCATGCTTACTCGCACTTCGTGTGTGCAGC
GGGTGCTTTCATTTCGTGCTCCGTGGTGATGGTACCCGGCGAGTTGCTCA
AGCAACGGTTGCAGGCGGGCGTGGTCCCCAGTATGGTGGGCGGCATCAAG
CAGATCTGGAAGACGGAGGGTTTGCCTGGCTTCTTCACAGGTTACAAGGC
CACCCTTATCCGCGACGTGCCCTACACCATGCTCGAGCTTGGCCTCTACG
AGAACTTCAAAACACTCCTCAAGAAGTACCGGAAGCGCGAGGAACTCACC
ACTCTTGAGGAGCTTAGCGCCGCTGCGGTCACCGGGGGCTTGGTCGGTCT
CTTAACCAATCCCTTGGACTTAGTCAAGACACGCTTGATGACGGGGGTGG
GAAAGGGAGGAAGGAAGGGAGGGAGGGAAGGAGGGAAGGAGGGCAGGGAG
GATGAAGGACAGGAATCAGGCAGAGCAATCACTGCCTCCATTCCAGTCCT
TTCGTGTTCTATAATATCAATGTGTCTTTCTTCATTGCTAATTGTCCCTC
TCTCGTTCCATCTTTGGTGTTGGATCACGTGCATACGGCATTTGGTCACC
TTTATTCCTCTCTCCCTCTCTTCTTCCCTCTTTGAAGACGCAATACACGG
GCTTCTTCGACGTGGTCCAGAAAATGTACAAGATGGAAGGCGGCGTCAAT
GCCTTCATGTCTGGCTCTAG
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Synonyms
Publications