NO01G03330.1, NO01G03330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03330.1
Unique NameNO01G03330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1840
Alignment locationchr1:871815..873857 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:871815..873857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03330.1 vs.
Match: EWM29282.1 (chaperone protein [Nannochloropsis gaditana])

HSP 1 Score: 531.6 bits (1368), Expect = 3.000e-147
Identity = 302/517 (58.41%), Postives = 377/517 (72.92%), Query Frame = 0 
Query:   21 MRAALFLSTSARYSRVIRPPPSSA--STLALLQPSNGTYQSGSGRRRQNLINRKEARRLFRTTRRTESPVLIGIVVLVGATLAHYFLRAAQRISKADAKKEKSGGKATVHDDNDDGDDEDDDDTADNKAGTGAS-KRKFPVLGLDMGSLQACVTCVTSTETSPLVVENHEGRRSTPSFIAFEDNHLVVGQLARRARWRAPASVAFNLQRLLGETTYDDKLRPLFPFPVEASLTS-DKSEPPVTILLNGGRSLTPIEASARLLEDLVATAEHKLQHSPGFAVLAIPSYFGAQAKSWALRAVADGTGLEVGEEEGGHGGGVEVVEDAVAALVCAHYSGAISQQEAFLGKPWLVVDVGGLNAQVSIVALDPEQGLG-------W--------------LVEDFKAKNEGLDLGMDRMALERLYEAAEATKQELSSKVSSSVRLPFITADHRGPKHLDATVSRALIEKLASPIVAQLEVPFREVLKEGGVEVRDLEGVLLSGGSTRLPFVGDFVRGRLVGG 513
            MRAAL LS   R +R+     S+A  +T+A     + + +S     R+    R++ARR FR T R E+PVLIGI +LVGATLAHY +RAAQRI+KAD KK++ G + T     DD ++E D + ++ +   GA+ +R+FPVLGLD+GS QACV  V + E +P VVENHEGRRSTP+FI++ED+HLVVGQLARRARWR PA V FN+QRLLG   Y+DK+RPLFPF V+A   S D    P+ + L GGR+LTP+EASAR+LE+LV +AEHKL  +PGFA+LA+PSYF   AK  AL+A AD TGL VG +EG  GGG+ VVEDAVAALVCAHYSGA+S +EAF GKPWLV+DVGGLNAQ S+VA+DP+QGLG       W              L+ DFK K+ GLDLG D +ALERL+EAAEA+KQELS   SS++RLPFITADHRGPKHLDATVSRA +E+LA P++ QLE P  E L+  GV +  L+GVLL+GG+ RLPF+G+FVR RL  G
Sbjct:    1 MRAALSLSHKLRDARLHSVALSTAPSATIAFAYAQDTSPRSRPCCMRRPPRTRQDARRCFRATCRRENPVLIGIGILVGATLAHYLVRAAQRIAKAD-KKKREGKEVT-----DDEEEERDHEESEGREEAGANVRREFPVLGLDLGSSQACVAFVAAKERAPEVVENHEGRRSTPAFISYEDDHLVVGQLARRARWREPAKVGFNIQRLLGLAAYEDKVRPLFPFAVDAREGSADGDLSPLVMRLKGGRALTPLEASARVLEELVQSAEHKLHTTPGFAILAVPSYFDEGAKRRALKAAADATGLSVGADEG-QGGGLAVVEDAVAALVCAHYSGAVSDEEAFFGKPWLVLDVGGLNAQASVVAMDPQQGLGVRANRTTWAVGGEQLDGVLVQHLISDFKEKHGGLDLGTDYLALERLHEAAEASKQELSLSPSSTLRLPFITADHRGPKHLDATVSRAALERLALPVLDQLEAPVVEALRASGVGLEGLQGVLLAGGTARLPFLGEFVRSRLTLG 510
The following BLAST results are available for this feature:
BLAST of NO01G03330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29282.13.000e-14758.41chaperone protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03330NO01G03330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03330.1NO01G03330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03330.1.cds1NO01G03330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03330.1.cds2NO01G03330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03330.1.cds3NO01G03330.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03330.1 ID=NO01G03330.1|Name=NO01G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1840bp
ATGATTTGGGAGGCAGTCCCTCGACCGCTAATTACAGACGGGACAGCCAT
GGCGGGATCCATGCGTGCGGCCCTGTTCCTCTCCACGAGTGCCCGCTACA
GCCGCGTCATCCGACCTCCCCCATCATCAGCCTCCACGCTTGCCCTCCTC
CAACCCTCTAACGGCACTTATCAAAGCGGGTCCGGTCGTCGGAGGCAAAA
TCTGATAAATCGAAAAGAGGCGCGAAGGCTCTTTCGGACCACCCGGCGTA
CTGAGAGCCCAGTTCTCATCGGCATAGTTGTCTTGGTTGGCGCTACCCTT
GCCCACTACTTCCTCCGAGCCGCCCAACGCATCTCCAAAGCGGATGCCAA
GAAGGAGAAGAGCGGCGGCAAAGCCACCGTGCACGACGACAACGATGATG
GTGATGATGAGGACGATGATGACACGGCTGACAACAAAGCAGGGACTGGC
GCAAGTAAGCGTAAATTTCCTGTGTTGGGACTGGATATGGGGTCCCTGCA
AGCGTGCGTGACGTGTGTAACGTCCACGGAGACGTCGCCCTTGGTGGTCG
AAAATCACGAAGGCCGTCGCTCCACTCCTTCATTCATTGCATTTGAAGAC
AATCATTTGGTCGTAGGGCAATTGGCCCGTCGAGCCCGATGGCGCGCACC
GGCCAGTGTGGCATTCAACCTTCAGAGGTTGCTGGGCGAAACGACTTACG
ACGACAAGCTCCGTCCCCTCTTTCCGTTTCCCGTGGAAGCCAGCCTTACT
TCCGACAAAAGTGAACCTCCCGTGACCATCTTATTGAATGGTGGGCGGTC
CTTAACGCCCATTGAGGCAAGTGCTCGTTTGTTGGAAGATCTGGTGGCGA
CGGCCGAGCACAAATTGCAGCACTCTCCTGGCTTTGCTGTGCTGGCCATC
CCTTCTTATTTTGGCGCGCAAGCAAAAAGCTGGGCGTTGAGAGCAGTGGC
GGATGGGACGGGGTTGGAGGTAGGGGAGGAGGAGGGCGGGCATGGTGGGG
GGGTGGAGGTGGTGGAGGACGCGGTGGCTGCTTTGGTGTGCGCGCATTAC
TCAGGGGCGATTTCTCAGCAAGAGGCTTTCTTGGGGAAGCCGTGGTTGGT
GGTGGACGTGGGAGGATTGAATGCACAAGTCTCTATCGTGGCATTGGACC
CGGAGCAGGGATTGGGGTGGTTGGTGGAGGACTTCAAGGCGAAGAACGAG
GGCTTGGATCTCGGGATGGATCGCATGGCGTTGGAACGGTTGTATGAAGC
GGCCGAGGCGACGAAACAGGAGTTGAGCAGCAAGGTGAGTTCGAGCGTCA
GATTGCCCTTCATCACGGCGGACCACCGGGGGCCGAAGCATTTAGATGCC
ACCGTCTCGAGAGCGCTGATTGAGAAATTGGCCTCGCCCATCGTGGCACA
GTTGGAGGTGCCGTTTAGGGAGGTATTGAAGGAGGGAGGGGTGGAGGTCA
GGGACCTGGAGGGGGTGCTGTTGAGTGGGGGGAGTACACGCTTGCCGTTT
GTAGGGGACTTTGTTCGAGGGAGGTTGGTGGGAGGAGGGGGAGGAGGGGA
GGGAAGGGGGGGGGAGGGACGAAGGTGGTGGTGCTTGAGGAGGTACCGCC
AGAGGAGATGGTGGCGGTGGGGGCGGGTTATTATGGGCGGGCGTTGATGG
ATTAGAGATGGAGAGAAGGAGGGAAGGAGAGAAGAGGGAAACGCTTGATG
CAAAAGTAGTTGGCCACCGATGTAACGAGAGAAATTTATCGCAAATGAAT
GATAGAGAGAAATGCGCAAATTGCACTTTTTGTTAACATCTTAATTTCTT
TAAGAATTTAAATAATTTTAACACGTTTGGGTTTTAGTAT
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protein sequence of NO01G03330.1

>NO01G03330.1-protein ID=NO01G03330.1-protein|Name=NO01G03330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=549bp
MIWEAVPRPLITDGTAMAGSMRAALFLSTSARYSRVIRPPPSSASTLALL
QPSNGTYQSGSGRRRQNLINRKEARRLFRTTRRTESPVLIGIVVLVGATL
AHYFLRAAQRISKADAKKEKSGGKATVHDDNDDGDDEDDDDTADNKAGTG
ASKRKFPVLGLDMGSLQACVTCVTSTETSPLVVENHEGRRSTPSFIAFED
NHLVVGQLARRARWRAPASVAFNLQRLLGETTYDDKLRPLFPFPVEASLT
SDKSEPPVTILLNGGRSLTPIEASARLLEDLVATAEHKLQHSPGFAVLAI
PSYFGAQAKSWALRAVADGTGLEVGEEEGGHGGGVEVVEDAVAALVCAHY
SGAISQQEAFLGKPWLVVDVGGLNAQVSIVALDPEQGLGWLVEDFKAKNE
GLDLGMDRMALERLYEAAEATKQELSSKVSSSVRLPFITADHRGPKHLDA
TVSRALIEKLASPIVAQLEVPFREVLKEGGVEVRDLEGVLLSGGSTRLPF
VGDFVRGRLVGGGGGGEGRGGEGRRWWCLRRYRQRRWWRWGRVIMGGR*
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mRNA from alignment at chr1:871815..873857+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03330.1 ID=NO01G03330.1|Name=NO01G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2043bp|location=Sequence derived from alignment at chr1:871815..873857+ (Nannochloropsis oceanica)
ATGATTTGGGGTACGTTTTGCATGCGGCGAAAGCGACGAATTCTCATTTT
TGTGATTTTCCCAACGGACGGGAGAACTGGCTGAGCTCCCCTGCTCCACC
ACATCTCTCAAGCCATCTCACGCAAATAGCCTGCCCTCTCCCTCTACACA
GAGGCAGTCCCTCGACCGCTAATTACAGACGGGACAGCCATGGCGGGATC
CATGCGTGCGGCCCTGTTCCTCTCCACGAGTGCCCGCTACAGCCGCGTCA
TCCGACCTCCCCCATCATCAGCCTCCACGCTTGCCCTCCTCCAACCCTCT
AACGGCACTTATCAAAGCGGGTCCGGTCGTCGGAGGCAAAATCTGATAAA
TCGAAAAGAGGCGCGAAGGCTCTTTCGGACCACCCGGCGTACTGAGAGCC
CAGTTCTCATCGGCATAGTTGTCTTGGTTGGCGCTACCCTTGCCCACTAC
TTCCTCCGAGCCGCCCAACGCATCTCCAAAGCGGATGCCAAGAAGGAGAA
GAGCGGCGGCAAAGCCACCGTGCACGACGACAACGATGATGGTGATGATG
AGGACGATGATGACACGGCTGACAACAAAGCAGGGACTGGCGCAAGTAAG
CGTAAATTTCCTGTGTTGGGACTGGATATGGGGTCCCTGCAAGCGTGCGT
GACGTGTGTAACGTCCACGGAGACGTCGCCCTTGGTGGTCGAAAATCACG
AAGGCCGTCGCTCCACTCCTTCATTCATTGCATTTGAAGACAATCATTTG
GTCGTAGGGCAATTGGCCCGTCGAGCCCGATGGCGCGCACCGGCCAGTGT
GGCATTCAACCTTCAGAGGTTGCTGGGCGAAACGACTTACGACGACAAGC
TCCGTCCCCTCTTTCCGTTTCCCGTGGAAGCCAGCCTTACTTCCGACAAA
AGTGAACCTCCCGTGACCATCTTATTGAATGGTGGGCGGTCCTTAACGCC
CATTGAGGCAAGTGCTCGTTTGTTGGAAGATCTGGTGGCGACGGCCGAGC
ACAAATTGCAGCACTCTCCTGGCTTTGCTGTGCTGGCCATCCCTTCTTAT
TTTGGCGCGCAAGCAAAAAGCTGGGCGTTGAGAGCAGTGGCGGATGGGAC
GGGGTTGGAGGTAGGGGAGGAGGAGGGCGGGCATGGTGGGGGGGTGGAGG
TGGTGGAGGACGCGGTGGCTGCTTTGGTGTGCGCGCATTACTCAGGGGCG
ATTTCTCAGCAAGAGGCTTTCTTGGGGAAGCCGTGGTTGGTGGTGGACGT
GGGAGGATTGAATGCACAAGTCTCTATCGTGGCATTGGACCCGGAGCAGG
GATTGGGGGTGAGGGGAAACAGGACAACATGGGCCGTGGGGGGGAGCAGG
TGGACTGGGCGCTGGTGCAGTGGTTGGTGGAGGACTTCAAGGCGAAGAAC
GAGGGCTTGGATCTCGGGATGGATCGCATGGCGTTGGAACGGTTGTATGA
AGCGGCCGAGGCGACGAAACAGGAGTTGAGCAGCAAGGTGAGTTCGAGCG
TCAGATTGCCCTTCATCACGGCGGACCACCGGGGGCCGAAGCATTTAGAT
GCCACCGTCTCGAGAGCGCTGATTGAGAAATTGGCCTCGCCCATCGTGGC
ACAGTTGGAGGTGCCGTTTAGGGAGGTATTGAAGGAGGGAGGGGTGGAGG
TCAGGGACCTGGAGGGGGTGCTGTTGAGTGGGGGGAGTACACGCTTGCCG
TTTGTAGGGGACTTTGTTCGAGGGAGGTTGGTGGGAGGAGGGGGAGGAGG
GGAGGGAAGGGGGGGGGAGGGACGAAGGTGGTGGTGCTTGAGGAGGTACC
GCCAGAGGAGATGGTGGCGGTGGGGGCGGGTTATTATGGGCGGGCGTTGA
TGGATTAGAGATGGAGAGAAGGAGGGAAGGAGAGAAGAGGGAAACGCTTG
ATGCAAAAGTAGTTGGCCACCGATGTAACGAGAGAAATTTATCGCAAATG
AATGATAGAGAGAAATGCGCAAATTGCACTTTTTGTTAACATCTTAATTT
CTTTAAGAATTTAAATAATTTTAACACGTTTGGGTTTTAGTAT
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Coding sequence (CDS) from alignment at chr1:871815..873857+

>NO01G03330.1 ID=NO01G03330.1|Name=NO01G03330.1|organism=Nannochloropsis oceanica|type=CDS|length=1647bp|location=Sequence derived from alignment at chr1:871815..873857+ (Nannochloropsis oceanica)
ATGATTTGGGAGGCAGTCCCTCGACCGCTAATTACAGACGGGACAGCCAT
GGCGGGATCCATGCGTGCGGCCCTGTTCCTCTCCACGAGTGCCCGCTACA
GCCGCGTCATCCGACCTCCCCCATCATCAGCCTCCACGCTTGCCCTCCTC
CAACCCTCTAACGGCACTTATCAAAGCGGGTCCGGTCGTCGGAGGCAAAA
TCTGATAAATCGAAAAGAGGCGCGAAGGCTCTTTCGGACCACCCGGCGTA
CTGAGAGCCCAGTTCTCATCGGCATAGTTGTCTTGGTTGGCGCTACCCTT
GCCCACTACTTCCTCCGAGCCGCCCAACGCATCTCCAAAGCGGATGCCAA
GAAGGAGAAGAGCGGCGGCAAAGCCACCGTGCACGACGACAACGATGATG
GTGATGATGAGGACGATGATGACACGGCTGACAACAAAGCAGGGACTGGC
GCAAGTAAGCGTAAATTTCCTGTGTTGGGACTGGATATGGGGTCCCTGCA
AGCGTGCGTGACGTGTGTAACGTCCACGGAGACGTCGCCCTTGGTGGTCG
AAAATCACGAAGGCCGTCGCTCCACTCCTTCATTCATTGCATTTGAAGAC
AATCATTTGGTCGTAGGGCAATTGGCCCGTCGAGCCCGATGGCGCGCACC
GGCCAGTGTGGCATTCAACCTTCAGAGGTTGCTGGGCGAAACGACTTACG
ACGACAAGCTCCGTCCCCTCTTTCCGTTTCCCGTGGAAGCCAGCCTTACT
TCCGACAAAAGTGAACCTCCCGTGACCATCTTATTGAATGGTGGGCGGTC
CTTAACGCCCATTGAGGCAAGTGCTCGTTTGTTGGAAGATCTGGTGGCGA
CGGCCGAGCACAAATTGCAGCACTCTCCTGGCTTTGCTGTGCTGGCCATC
CCTTCTTATTTTGGCGCGCAAGCAAAAAGCTGGGCGTTGAGAGCAGTGGC
GGATGGGACGGGGTTGGAGGTAGGGGAGGAGGAGGGCGGGCATGGTGGGG
GGGTGGAGGTGGTGGAGGACGCGGTGGCTGCTTTGGTGTGCGCGCATTAC
TCAGGGGCGATTTCTCAGCAAGAGGCTTTCTTGGGGAAGCCGTGGTTGGT
GGTGGACGTGGGAGGATTGAATGCACAAGTCTCTATCGTGGCATTGGACC
CGGAGCAGGGATTGGGGTGGTTGGTGGAGGACTTCAAGGCGAAGAACGAG
GGCTTGGATCTCGGGATGGATCGCATGGCGTTGGAACGGTTGTATGAAGC
GGCCGAGGCGACGAAACAGGAGTTGAGCAGCAAGGTGAGTTCGAGCGTCA
GATTGCCCTTCATCACGGCGGACCACCGGGGGCCGAAGCATTTAGATGCC
ACCGTCTCGAGAGCGCTGATTGAGAAATTGGCCTCGCCCATCGTGGCACA
GTTGGAGGTGCCGTTTAGGGAGGTATTGAAGGAGGGAGGGGTGGAGGTCA
GGGACCTGGAGGGGGTGCTGTTGAGTGGGGGGAGTACACGCTTGCCGTTT
GTAGGGGACTTTGTTCGAGGGAGGTTGGTGGGAGGAGGGGGAGGAGGGGA
GGGAAGGGGGGGGGAGGGACGAAGGTGGTGGTGCTTGAGGAGGTACCGCC
AGAGGAGATGGTGGCGGTGGGGGCGGGTTATTATGGGCGGGCGTTGA
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Synonyms
Publications