NO01G03320.2, NO01G03320.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03320.2
Unique NameNO01G03320.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length840
Alignment locationchr1:870594..871781 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:870594..871781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03320.2 vs.
Match: EWM29254.1 (UBA-like protein [Nannochloropsis gaditana])

HSP 1 Score: 111.7 bits (278), Expect = 1.300e-21
Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 0 
Query:    1 MAHYPTLTYSTFKVQANGLPPELRVLPPLDTALPPAHDFELEEKVVRDYADSQAAAEKLAAQEASRIAT 70
            MAHYPTL YSTFKV ANGLP +LRVLP LDT LPPAHDFELEEKVV+ Y DSQAAAE+L AQEAS + T
Sbjct:    1 MAHYPTLAYSTFKVDANGLPADLRVLPELDTTLPPAHDFELEEKVVKAYEDSQAAAERLVAQEASPVVT 69
The following BLAST results are available for this feature:
BLAST of NO01G03320.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29254.11.300e-2179.71UBA-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03320NO01G03320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03320.2NO01G03320.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03320.2.cds1NO01G03320.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03320.2.cds2NO01G03320.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03320.2.cds3NO01G03320.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03320.2 ID=NO01G03320.2|Name=NO01G03320.2|organism=Nannochloropsis oceanica|type=mRNA|length=840bp
AGGTCAACATTTCTTAGGTGCTTGCTTGTGGAAGAGGCTAGTGTTGCTTG
CACCGTTTGGTCGATTCCAAAAAAGAAGCTCTGTTGGCAGCATTACCGTC
AGCCGCTTCCTCCCGCCTCCAGCCCTCCCTTAAACAATATGGCGCACTAC
CCAACATTAACGTACTCTACCTTCAAAGTGCAAGCAAATGGTCTGCCTCC
GGAGCTCCGGGTGTTGCCGCCGCTAGATACTGCACTGCCGCCTGCCCACG
ACTTTGAGCTAGAGGAAAAGGTAGTAAGGGACTACGCGGACTCCCAAGCC
GCCGCCGAGAAGCTGGCCGCCCAAGAAGCATCACGTATTGCCACGTACGT
TTTTTTCCTGCACAGATTTTCTTCGTTCTTTCTCACAAAGGCCCACCCTT
CACTGAGCTTCAATCCAACACGCACATCTACACAAATATAGCGCAACGCC
TGTCGAGGCTGCCGAGTCAGTATCGTCCTGTATTACGGTACGCATACATC
TCATTGCAATAGTATTCTTCTCATTTACTTATGCTTGTCTGTCCCAATAC
CTTCTGGAAATACATTCACACAAAATAGGATGGAGTGGACAGTCTGACTT
TGGACCCGGAGAAGAAGAAGAAGCTGAGCAGCATGAAAGAGATGACCAAG
GGTGACGAAAAAACGTGCATATCTTACCTTGATTCCTACTCATGGGACCT
GCAGCGGGCGGTTCAAGAATATTTCACAAAATAAATTAACCTCCCCACCC
CTACTGGGCTTGACCGACATGGTGACAGGAAAAGGAGTACAAATAATGCA
ATGTATACACCAAAAACCCAAGAAACTGAAGTTCCCAAAT
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protein sequence of NO01G03320.2

>NO01G03320.2-protein ID=NO01G03320.2-protein|Name=NO01G03320.2|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MAHYPTLTYSTFKVQANGLPPELRVLPPLDTALPPAHDFELEEKVVRDYA
DSQAAAEKLAAQEASRIATYVFFLHRFSSFFLTKAHPSLSFNPTRTSTQI
*
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mRNA from alignment at chr1:870594..871781+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03320.2 ID=NO01G03320.2|Name=NO01G03320.2|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp|location=Sequence derived from alignment at chr1:870594..871781+ (Nannochloropsis oceanica)
AGGTCAACATTTCTTAGGTGCTTGCTTGTGGAAGAGGCTAGTGTTGCTTG
CACCGTTTGGTCGATTCCAAAAAAGAAGCTCTGTTGGCAGCATTACCGTC
AGCCGCTTCCTCCCGCCTCCAGCCCTCCCTTAAACAATATGGCGCACTAC
CCAACATTAACGTACTCTACCTTCAAAGTGCAAGCAAATGGTCTGCCTCC
GGAGCTCCGGGTGTTGCCGCCGCTAGATGTGAGTACACGAGGGAGGGAGG
ATGCAAATCGCTTTTTTCTGGAGTGCTTGAGCCGATGAAGCGTTGTATCT
TGTCCAGCTTACGGTAACAGAAGCAGGCGGTGTATGGTTGCATTTGTTTA
GGGGATCGATACTATTCTGCTATTTGCGGACTCTGGGGCCCCGATCTTTC
CTGCAGTATCGGCTGCCGCCTCTTGTCCTGCTTATCATTCACACTCCCAC
CCACTGCATTCTGTACAGACTGCACTGCCGCCTGCCCACGACTTTGAGCT
AGAGGAAAAGGTGCGTTTACCTAAGCGGATGGGCTTCTATATGAGGTGTG
GCATCGATCTAGATGTGGCTGCACGTCTTTTCTCTCCGTAAAACTCTCAC
TGACAAACTATGTCACAGGTAGTAAGGGACTACGCGGACTCCCAAGCCGC
CGCCGAGAAGCTGGCCGCCCAAGAAGCATCACGTATTGCCACGTACGTTT
TTTTCCTGCACAGATTTTCTTCGTTCTTTCTCACAAAGGCCCACCCTTCA
CTGAGCTTCAATCCAACACGCACATCTACACAAATATAGCGCAACGCCTG
TCGAGGCTGCCGAGTCAGTATCGTCCTGTATTACGGTACGCATACATCTC
ATTGCAATAGTATTCTTCTCATTTACTTATGCTTGTCTGTCCCAATACCT
TCTGGAAATACATTCACACAAAATAGGATGGAGTGGACAGTCTGACTTTG
GACCCGGAGAAGAAGAAGAAGCTGAGCAGCATGAAAGAGATGACCAAGGG
TGACGAAAAAACGTGCATATCTTACCTTGATTCCTACTCATGGGACCTGC
AGCGGGCGGTTCAAGAATATTTCACAAAATAAATTAACCTCCCCACCCCT
ACTGGGCTTGACCGACATGGTGACAGGAAAAGGAGTACAAATAATGCAAT
GTATACACCAAAAACCCAAGAAACTGAAGTTCCCAAAT
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Coding sequence (CDS) from alignment at chr1:870594..871781+

>NO01G03320.2 ID=NO01G03320.2|Name=NO01G03320.2|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at chr1:870594..871781+ (Nannochloropsis oceanica)
ATGGCGCACTACCCAACATTAACGTACTCTACCTTCAAAGTGCAAGCAAA
TGGTCTGCCTCCGGAGCTCCGGGTGTTGCCGCCGCTAGATACTGCACTGC
CGCCTGCCCACGACTTTGAGCTAGAGGAAAAGGTAGTAAGGGACTACGCG
GACTCCCAAGCCGCCGCCGAGAAGCTGGCCGCCCAAGAAGCATCACGTAT
TGCCACGTACGTTTTTTTCCTGCACAGATTTTCTTCGTTCTTTCTCACAA
AGGCCCACCCTTCACTGAGCTTCAATCCAACACGCACATCTACACAAATA
TAG
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Synonyms
Publications