NO01G03180.1, NO01G03180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03180.1
Unique NameNO01G03180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1863
Alignment locationchr1:838319..840949 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:838319..840949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03180.1 vs.
Match: EWM29248.1 (hypothetical protein Naga_100119g2 [Nannochloropsis gaditana])

HSP 1 Score: 321.6 bits (823), Expect = 3.100e-84
Identity = 201/354 (56.78%), Postives = 229/354 (64.69%), Query Frame = 0 
Query:   18 VIDAGAVEGMMVDETRMRGRRSTAR------PSLVLLLFVFTLLMGMARAGMDSRSSLAEQSPFQVLGEWLDRSDDSALKGAGSRDIERAFKVVASSQAALKTMDGAAHGLYAYSHSRAPVKAWTRLEYSRATKAEKESRLKAFRKAKLLEEAVYSSELAELVSDGVSKEESLAMVKDLQIKHEVLLEDFT----GDFRFILLVDRESKRLTLSVGDSVQWAEKLDIIRAHPLTVPLRSRGLLRRSMNVNPRLWKAAGAVPAPRRGMVKKKGGREGGERGASGAPGVTVGEEGEVTSTGATEGGEGGGKGGPRVSQGTTGLMRDKVTAFVFAPPPCVSKNIRGLRRFTTSFVLG 362
            + DA  + G      R RGR S+ R       SLV +     L++  A A + S     + SPFQ+L EWLDRS DS LKGAG  +IERAFKVVASSQ ALKTMDGAAH LYAYSH R PV AW+RLEYSRA+KAEKE RLKAFRKAKLLEEAVYSSELAEL +DGV + E+L MV +LQ   EVL EDF     G FRF+LLVDR+S+RLTLSVGDS+ WA++LD++RA PLTVPLR RGLLRRSM VNPRLW AA  V   R   V     RE     A    G ++G                             G   D VTAFVFAP PC+SKNIRGLRRFTTSF+LG
Sbjct:   67 ITDAEGLGGR--SSARRRGRFSSTRVTGLSSASLVQVAVGVILIISTAGA-VSSHPPWTDSSPFQILSEWLDRSADSDLKGAGPPNIERAFKVVASSQQALKTMDGAAHSLYAYSHPRPPVTAWSRLEYSRASKAEKEMRLKAFRKAKLLEEAVYSSELAELSADGVGRREALTMVSELQSTQEVLAEDFLSVEGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPPLTVPLRPRGLLRRSMMVNPRLWAAAVTV-IERVKAVLTTALRETCPGYALHVVGFSLG-----------------------------GSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILG 387
The following BLAST results are available for this feature:
BLAST of NO01G03180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29248.13.100e-8456.78hypothetical protein Naga_100119g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03180NO01G03180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03180.1NO01G03180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03180.1.cds1NO01G03180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03180.1.cds2NO01G03180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03180.1.cds3NO01G03180.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03180.1.cds4NO01G03180.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03180.1 ID=NO01G03180.1|Name=NO01G03180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp
ATGGGTGGGAGGGAAGCCGCGGACGAGGCGGGGGAACATGTGCCTTTTCC
TGTCATCGATGCGGGAGCAGTCGAGGGTATGATGGTTGATGAGACGAGGA
TGAGGGGGAGGAGGTCGACAGCGCGGCCATCATTGGTCTTGCTACTGTTT
GTTTTCACCTTGCTGATGGGCATGGCGAGGGCAGGCATGGATTCAAGGTC
TTCTTTGGCGGAGCAGAGCCCTTTTCAAGTCCTGGGGGAATGGCTGGACC
GCAGCGACGACTCGGCCCTCAAGGGCGCCGGCTCCCGGGACATCGAGCGT
GCTTTCAAGGTGGTCGCCTCCTCCCAAGCGGCCCTCAAAACCATGGATGG
CGCCGCGCACGGTCTCTATGCCTACAGTCACTCCCGCGCCCCCGTCAAAG
CCTGGACCCGGCTTGAATATAGCCGGGCGACAAAAGCAGAGAAAGAGTCC
CGGTTAAAGGCATTCCGAAAAGCGAAGCTACTGGAAGAAGCGGTGTATAG
CTCGGAGCTTGCCGAATTGGTCTCTGATGGGGTCAGCAAGGAAGAGAGTC
TTGCCATGGTGAAGGACTTACAAATCAAACATGAGGTGCTTCTGGAGGAT
TTCACGGGCGATTTTCGGTTCATTTTGCTCGTGGACCGAGAGAGTAAACG
GCTGACTCTCTCTGTAGGGGACTCGGTTCAGTGGGCTGAGAAATTAGATA
TAATAAGAGCGCATCCCCTGACTGTACCATTGAGGTCGCGTGGGTTGTTG
AGAAGGTCAATGAATGTCAATCCTCGCCTGTGGAAGGCAGCGGGAGCCGT
GCCTGCCCCACGCCGGGGGATGGTGAAGAAGAAGGGAGGGAGGGAAGGAG
GAGAAAGAGGGGCAAGTGGGGCACCGGGAGTGACGGTGGGAGAGGAGGGA
GAGGTTACCTCAACAGGGGCGACAGAGGGGGGGGAGGGAGGAGGAAAAGG
TGGACCACGGGTCTCGCAGGGAACTACGGGACTGATGCGCGACAAAGTGA
CGGCCTTTGTCTTTGCCCCGCCGCCTTGTGTCTCTAAAAATATCCGAGGC
CTCCGCCGATTCACCACTTCGTTTGTGCTGGGTACGTTAAAATGAATTGA
CGTCAACCAATTTGTTGACACCCATATGTGTGTGCGTGTGTCTGTTTGTG
GTAACGATGTCTCTTCCTTGGCTTTGTTCGCCTGGATGGCTACTCACTAT
CCCATTTCCTTATGCTGTTTCTCGTCCCTCTCTCTTCCCATTCCTGCCCA
TAAGGCGACGATATGGTCCCTCGCGCAACGGCTGCTTCTTTGAGCCGTCT
CGAAAATCGCCTCCTGGACTACGTCTCGGACGGTGGAGGCGGAGGTATCT
ACTTTGATTATGCCAGGAGTTGGATGAGAGGGGTGGTGGGTGCAACGCTC
CAGCAGGTGGTGACGCATCAGATGACCAAGAAGGAGGAGGAGGAAGAGGA
AGAGGGGGCGCTGACGCTGCCTGGACGGGTGTACTACATCAAGCCACGGA
AGCTGCATGGAGGAGCGACGATCAAAGAGGTCATGCGCGGCAACCTCCGC
GAGGACGTCCTGTGGCAGATCCAAGACATTTTCGTCTCCAAAAGCATGCT
CAAGCATCATTCTCTTGACAAGTACATCACGGTCTTGGCGAGAATACCTG
TGGAATGATGAGCAGGGAACGCACATGCACACATACACACGTGCGAGAAT
TCACAGGGGTATGATGTGGGAGAGGAGTGAGTCGAGGCAGGGAAAGTGTC
TGCTTGCTTGTGTACATACGACTTGAATAGAGACAAGACACTTTAAGCAT
TGAAAAATTAATAAAAAGAACAGACTCGCCATAATGAAGGAAGGCATTTA
CTAACGTAGGGCG
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protein sequence of NO01G03180.1

>NO01G03180.1-protein ID=NO01G03180.1-protein|Name=NO01G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MGGREAADEAGEHVPFPVIDAGAVEGMMVDETRMRGRRSTARPSLVLLLF
VFTLLMGMARAGMDSRSSLAEQSPFQVLGEWLDRSDDSALKGAGSRDIER
AFKVVASSQAALKTMDGAAHGLYAYSHSRAPVKAWTRLEYSRATKAEKES
RLKAFRKAKLLEEAVYSSELAELVSDGVSKEESLAMVKDLQIKHEVLLED
FTGDFRFILLVDRESKRLTLSVGDSVQWAEKLDIIRAHPLTVPLRSRGLL
RRSMNVNPRLWKAAGAVPAPRRGMVKKKGGREGGERGASGAPGVTVGEEG
EVTSTGATEGGEGGGKGGPRVSQGTTGLMRDKVTAFVFAPPPCVSKNIRG
LRRFTTSFVLGTLK*
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mRNA from alignment at chr1:838319..840949-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03180.1 ID=NO01G03180.1|Name=NO01G03180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2631bp|location=Sequence derived from alignment at chr1:838319..840949- (Nannochloropsis oceanica)
ATGGGTGGGAGGGAAGCCGCGGACGAGGCGGGGGAACATGTGCCTTTTCC
TGTCATCGATGCGGGAGCAGTCGAGGGTATGATGGTTGATGAGACGAGGA
TGAGGGGGAGGAGGTCGACAGCGCGGCCATCATTGGTCTTGCTACTGTTT
GTTTTCACCTTGCTGATGGGCATGGCGAGGGCAGGCATGGATTCAAGGTC
TTCTTTGGCGGAGCAGAGCCCTTTTCAAGTCCTGGGGGAATGGCTGGACC
GCAGCGACGACTCGGCCCTCAAGGGCGCCGGCTCCCGGGACATCGAGCGT
GCTTTCAAGGTACGAGATAAGGAGAGCTGGCGTGACTTTCATTGAGTAAG
CTTGCAGGTGCATTGTTGGACCTTGCACACACGATTATGCAACATGTATC
ACTCATCCATTTTCACACATTTCTCCATCTCACCCTCCCTTCATAGGTGG
TCGCCTCCTCCCAAGCGGCCCTCAAAACCATGGATGGCGCCGCGCACGGT
CTCTATGCCTACAGTCACTCCCGCGCCCCCGTCAAAGCCTGGACCCGGCT
TGAATATAGCCGGGCGACAAAAGCAGAGAAAGAGTCCCGGTTAAAGGCAT
TCCGAAAAGCGAAGCTACTGGAAGAAGCGGTGTATAGCTCGGAGCTTGCC
GAATTGGTCTCTGATGGGGTCAGCAAGGAAGAGAGTCTTGCCATGGTGAA
GGACTTACAAATCAAACATGAGGTGCTTCTGGAGGATTTCACGGGCGATT
TTCGGTTCATTTTGCTCGTGGACCGAGAGAGTAAACGGCTGACTCTCTCT
GTAGGGGACTCGGTTCAGTGGGCTGAGAAATTAGATATAATAAGAGCGCA
TCCCCTGACTGTACCATTGAGGTCGCGTGGGTTGTTGAGAAGGTCAATGA
ATGTCAATCCTCGCCTGTGGAAGGCAGCGGTGAGAATTGTGGAGAAAATC
CGACCAGTTTTAGCTGCAGAGCCAGGAAATAAGAAGGGGGAGGAGGATGG
GAAGGACGTGGAGGGGGGGGGAAGGGAGGAAAGGAAAAGGAAACTTATGC
GGGGTATGATTTGCATGTTGTTGGCTTTTCACTCGGGGGGGGTTAGGGGC
ATTAGTGGGGGGGATACTGGACGGTGCGATTGCCGTACAGGGAGCCGTGC
CTGCCCCACGCCGGGGGATGGTGAAGAAGAAGGGAGGGAGGGAAGGAGGA
GAAAGAGGGGCAAGTGGGGCACCGGGAGTGACGGTGGGAGAGGAGGGAGA
GGTTACCTCAACAGGGGCGACAGAGGGGGGGGAGGGAGGAGGAAAAGGTG
GACCACGGGTCTCGCAGGGAACTACGGGACTGGTAAGGAGCGCATGGGAG
GCTTCTGCGTGTTTCTCTTCCTCACATTCTTCTTTCTCCCCTGATTTTAC
ATTTTACCCATTTTCCTCCTAATCCCTTCCCCCTCAATCAAGATGCGCGA
CAAAGTGACGGCCTTTGTCTTTGCCCCGCCGCCTTGTGTCTCTAAAAATA
TCCGAGGCCTCCGCCGATTCACCACTTCGTTTGTGCTGGGTACGTTAAAA
TGAATTGACGTCAACCAATTTGTTGACACCCATATGTGTGTGCGTGTGTC
TGTTTGTGGTAACGATGTCTCTTCCTTGGCTTTGTTCGCCTGGATGGCTA
CTCACTATCCCATTTCCTTATGCTGTTTCTCGTCCCTCTCTCTTCCCATT
CCTGCCCATAAGGCGACGATATGGTCCCTCGCGCAACGGCTGCTTCTTTG
AGCCGTCTCGAAAATCGCCTCCTGGACTACGTCTCGGACGGTGGAGGCGG
AGGTATCTACTTTGATTATGCCAGGTAAGACAAAAAGGGTGATGAAATGC
AAAGAGGGAGAGAGGGAAGGAGAAAGGGGACGTGAAAGTGAGTGAAAGCG
GAGGCTTTCCTGGTTGTGCAAATTGACTCGAGCGGTGAAAATGGAATAAA
ACTGACACTCACAAGCTCTCTTCCCTTTTCTCGTCTTTCTTACCACAATA
GGAGTTGGATGAGAGGGGTGGTGGGTGCAACGCTCCAGCAGGTGGTGACG
CATCAGATGACCAAGAAGGAGGAGGAGGAAGAGGAAGAGGGGGCGCTGAC
GCTGCCTGGACGGGTGTACTACATCAAGCCACGGAAGCTGCATGGAGGAG
CGACGATCAAAGAGGTACGTTAAAAGATGATATTTTCGTATGCAAGATTC
GGAAATAGACTCACAATTATAATTTTATTGTCGGTCTTTCGGTCGATGCC
GGTCTCAGATTTTTCATTCTCATTTACCGTGTTTTTTCCTCATCTAGGTC
ATGCGCGGCAACCTCCGCGAGGACGTCCTGTGGCAGATCCAAGACATTTT
CGTCTCCAAAAGCATGCTCAAGCATCATTCTCTTGACAAGTACATCACGG
TCTTGGCGAGAATACCTGTGGAATGATGAGCAGGGAACGCACATGCACAC
ATACACACGTGCGAGAATTCACAGGGGTATGATGTGGGAGAGGAGTGAGT
CGAGGCAGGGAAAGTGTCTGCTTGCTTGTGTACATACGACTTGAATAGAG
ACAAGACACTTTAAGCATTGAAAAATTAATAAAAAGAACAGACTCGCCAT
AATGAAGGAAGGCATTTACTAACGTAGGGCG
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Coding sequence (CDS) from alignment at chr1:838319..840949-

>NO01G03180.1 ID=NO01G03180.1|Name=NO01G03180.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr1:838319..840949- (Nannochloropsis oceanica)
ATGGGTGGGAGGGAAGCCGCGGACGAGGCGGGGGAACATGTGCCTTTTCC
TGTCATCGATGCGGGAGCAGTCGAGGGTATGATGGTTGATGAGACGAGGA
TGAGGGGGAGGAGGTCGACAGCGCGGCCATCATTGGTCTTGCTACTGTTT
GTTTTCACCTTGCTGATGGGCATGGCGAGGGCAGGCATGGATTCAAGGTC
TTCTTTGGCGGAGCAGAGCCCTTTTCAAGTCCTGGGGGAATGGCTGGACC
GCAGCGACGACTCGGCCCTCAAGGGCGCCGGCTCCCGGGACATCGAGCGT
GCTTTCAAGGTGGTCGCCTCCTCCCAAGCGGCCCTCAAAACCATGGATGG
CGCCGCGCACGGTCTCTATGCCTACAGTCACTCCCGCGCCCCCGTCAAAG
CCTGGACCCGGCTTGAATATAGCCGGGCGACAAAAGCAGAGAAAGAGTCC
CGGTTAAAGGCATTCCGAAAAGCGAAGCTACTGGAAGAAGCGGTGTATAG
CTCGGAGCTTGCCGAATTGGTCTCTGATGGGGTCAGCAAGGAAGAGAGTC
TTGCCATGGTGAAGGACTTACAAATCAAACATGAGGTGCTTCTGGAGGAT
TTCACGGGCGATTTTCGGTTCATTTTGCTCGTGGACCGAGAGAGTAAACG
GCTGACTCTCTCTGTAGGGGACTCGGTTCAGTGGGCTGAGAAATTAGATA
TAATAAGAGCGCATCCCCTGACTGTACCATTGAGGTCGCGTGGGTTGTTG
AGAAGGTCAATGAATGTCAATCCTCGCCTGTGGAAGGCAGCGGGAGCCGT
GCCTGCCCCACGCCGGGGGATGGTGAAGAAGAAGGGAGGGAGGGAAGGAG
GAGAAAGAGGGGCAAGTGGGGCACCGGGAGTGACGGTGGGAGAGGAGGGA
GAGGTTACCTCAACAGGGGCGACAGAGGGGGGGGAGGGAGGAGGAAAAGG
TGGACCACGGGTCTCGCAGGGAACTACGGGACTGATGCGCGACAAAGTGA
CGGCCTTTGTCTTTGCCCCGCCGCCTTGTGTCTCTAAAAATATCCGAGGC
CTCCGCCGATTCACCACTTCGTTTGTGCTGGGTACGTTAAAATGA
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Synonyms
Publications