NO01G03160.1, NO01G03160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03160.1
Unique NameNO01G03160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1331
Alignment locationchr1:834198..836244 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:834198..836244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03160.1 vs.
Match: XP_005853758.1 (mosc domain protein [Nannochloropsis gaditana CCMP526]; EKU22599.1 mosc domain protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 466.5 bits (1199), Expect = 6.900e-128
Identity = 227/320 (70.94%), Postives = 264/320 (82.50%), Query Frame = 0 
Query:    1 MEHTKGTRVLAAAATCATGILLYVTYKGWLAICKKEEEKEEEIGKVISLYVYPVKSCKGIEVQASLVEARGLMLDRLWMVTTSTGTFRTQRQIPKMALIQPNLPSSLSAPLELNAPDMPTCVVPVWTTGKQVRVRVWDDHCQGYDQGDEVAQWLSTFLEEEDLRLVRIDDKERRQVELAFAPRGSITGFADGFPFLLANQSSLDDLNDRLPTPIPMARFRPNIVVGGPAAFDEDKWDKIAIGDIRLRVVKPCSRCKIPNTDQETAEVAKEPAETLKKFRTGAILGIGYGGKDEFYFAENLIHDSKKKTGVVSVGDPLRVF 321
            MEH  G   L AAAT   G ++YV YKG   I  K ++ EE  G+V+SL++YPVKSC+GI+V+ASLVEARGL++DRLWMV TSTG FR+QRQ+PKMALIQPNLPSS SAPLE+NAP MPTCVVPV T+GK++ VRVW D CQGYDQGD++A WL+ FLEEE LRLVRID+KERRQV+LAFA RG+ITGFADGFPFL+ NQ+SLDDLN RL +P+PMARFRPNIVV GP AF ED W KI IGD+RLRVVKPCSRCK+PNTD ETAEV  EP  TLK FRTGA+LGI  GGK+E YF +NL+HDS KK   +SVGDPL +F
Sbjct:    1 MEHNIGVWALLAAAT---GGIIYVAYKGNSRIVWKYKQGEEA-GRVVSLHIYPVKSCRGIDVEASLVEARGLVMDRLWMVVTSTGAFRSQRQLPKMALIQPNLPSSFSAPLEMNAPGMPTCVVPVKTSGKRMSVRVWGDTCQGYDQGDDIAGWLTKFLEEEGLRLVRIDEKERRQVDLAFATRGAITGFADGFPFLMTNQASLDDLNSRLASPLPMARFRPNIVVSGPPAFAEDGWGKIKIGDLRLRVVKPCSRCKVPNTDIETAEVGVEPGNTLKTFRTGALLGIDIGGKNEVYFGQNLLHDSPKKASFLSVGDPLTIF 316
The following BLAST results are available for this feature:
BLAST of NO01G03160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853758.16.900e-12870.94mosc domain protein [Nannochloropsis gaditana CCMP... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03160NO01G03160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03160.1NO01G03160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03160.1.cds1NO01G03160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03160.1.cds2NO01G03160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03160.1.cds3NO01G03160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03160.1.cds4NO01G03160.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03160.1.cds5NO01G03160.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03160.1.cds6NO01G03160.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03160.1.cds7NO01G03160.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03160.1 ID=NO01G03160.1|Name=NO01G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1331bp
AACGACCTCCCCGCCGACATCGTGCAACGGCTTCTTCAACTTGATGCCCT
TGAATCAATAGTCAACTGCCCCCAGAGCGACATAATGAAAACTGTGACAT
GCAAAACCTGCGACTTTCACCAGACTAGTCAACGCCGCGTCGCGTCCCTT
CCTCTTCCGCTAACGGTTCCTCCCGTTCTCGTCGTCTGTCTTTCCTTACA
ATTGTAGCACATCACACACACACAAGCGACCAGTCACAATCAAGGCATGG
AGCACACCAAAGGCACGCGGGTCTTGGCGGCAGCAGCTACCTGTGCCACA
GGAATTCTGCTCTACGTGACTTACAAGGGCTGGCTCGCGATATGTAAAAA
GGAGGAGGAAAAGGAAGAAGAGATTGGTAAAGTAATCTCGCTTTACGTCT
ACCCAGTCAAGTCCTGCAAGGGCATCGAGGTTCAAGCATCTCTCGTGGAA
GCCCGAGGGTTGATGTTGGACCGGCTGTGGATGGTTACGACGTCGACAGG
CACATTTCGAACTCAACGCCAGATCCCCAAGATGGCGTTGATCCAGCCCA
ATCTACCATCGTCCTTGTCTGCGCCCTTGGAACTGAATGCTCCCGACATG
CCCACATGCGTTGTCCCAGTGTGGACGACAGGAAAGCAAGTGCGTGTACG
CGTGTGGGATGATCACTGCCAGGGATATGACCAAGGCGATGAGGTGGCTC
AATGGCTCTCGACGTTCTTGGAGGAGGAGGACTTGCGGTTGGTGCGGATC
GATGATAAAGAACGCCGCCAGGTCGAATTGGCTTTTGCGCCGCGCGGGAG
CATCACAGGCTTTGCCGACGGCTTTCCCTTCTTGCTGGCCAACCAAAGCT
CTCTGGACGACTTGAACGATCGCCTGCCCACACCTATCCCTATGGCTCGC
TTCCGACCTAATATCGTCGTGGGGGGCCCAGCTGCCTTCGACGAGGATAA
GTGGGATAAAATTGCGATTGGCGACATCCGCCTTCGTGTAGTTAAGCCTT
GCTCTCGATGCAAGATCCCCAACACGGATCAGGAGACTGCCGAGGTTGCG
AAGGAACCCGCAGAGACGCTTAAGAAGTTCAGGACGGGTGCCATTCTAGG
CATTGGATATGGGGGAAAAGACGAGTTTTACTTTGCTGAAAACCTAATTC
ATGACAGCAAAAAAAAAACGGGCGTTGTTTCCGTGGGTGATCCCTTGAGA
GTCTTCACTTGAGAAGATGAAAAAATAAGATAGTAAGAAAGGGGGATTGA
AGTATGATTCGCAACTTGCTTATTGAGAAGTATTCGGGTTCAAGTCAGTG
TAAAAAGAAAAGCTGTGTGCCAAAGTGTTGA
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protein sequence of NO01G03160.1

>NO01G03160.1-protein ID=NO01G03160.1-protein|Name=NO01G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MEHTKGTRVLAAAATCATGILLYVTYKGWLAICKKEEEKEEEIGKVISLY
VYPVKSCKGIEVQASLVEARGLMLDRLWMVTTSTGTFRTQRQIPKMALIQ
PNLPSSLSAPLELNAPDMPTCVVPVWTTGKQVRVRVWDDHCQGYDQGDEV
AQWLSTFLEEEDLRLVRIDDKERRQVELAFAPRGSITGFADGFPFLLANQ
SSLDDLNDRLPTPIPMARFRPNIVVGGPAAFDEDKWDKIAIGDIRLRVVK
PCSRCKIPNTDQETAEVAKEPAETLKKFRTGAILGIGYGGKDEFYFAENL
IHDSKKKTGVVSVGDPLRVFT*
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mRNA from alignment at chr1:834198..836244+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03160.1 ID=NO01G03160.1|Name=NO01G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2047bp|location=Sequence derived from alignment at chr1:834198..836244+ (Nannochloropsis oceanica)
AACGACCTCCCCGCCGACATCGTGCAACGGCTTCTTCAACTTGATGCCCT
TGAATCAATAGTCAACTGCCCCCAGAGCGACATAATGAAAACTGTGACAT
GCAAAACCTGCGACTTTCACCAGACTAGTCAACGCCGCGTCGCGTCCCTT
CCTCTTCCGCTAACGGTTCCTCCCGTTCTCGTCGTCTGTCTTTCCTTACA
ATTGTAGCACATCACACACACACAAGCGACCAGTCACAATCAAGGCATGG
AGCACACCAAAGGCACGCGGGTCTTGGCGGCAGCAGCTACCTGTGCCACA
GGAATTCTGCTCTACGTGACTTACAAGGGCTGGCTCGCGATATGTAAAAA
GGTAATTTAGAGGCCAATGTCTGTAGAGAGTGGTCGTGGGGAGGGGAGGT
GGGATAATGAGCAACGGATGCCGCCACTCGGCGTATGAAAAGTAAGGTTG
AAAAGAGAGTAGATTATGAAACACCAATCAACAAAATTCACACCCTCCTA
CTCTCATCTGCACAGGAGGAGGAAAAGGAAGAAGAGATTGGTAAAGTAAT
CTCGCTTTACGTCTACCCAGTCAAGTCCTGCAAGGGCATCGAGGTTCAAG
CATCTCTCGTGGAAGCCCGAGGGTTGATGTTGGACCGGCTGTGGATGGTT
ACGACGTCGACAGGCACATTTCGAACTCAACGCCAGATCCCCAAGATGGC
GTTGATCCAGCCCAATCTACCATCGTCCTTGTCTGCGGTAAGTGGGAAGT
AAGACACGCAGGGAAGATGAGCTCGCGAATGAATTGGCTTCTCCCCAATT
TATGACACGTATCCACATTCAACCTGCAAATACAGCCCTTGGAACTGAAT
GCTCCCGACATGCCCACATGCGTTGTCCCAGTGTGGACGACAGGAAAGCA
AGTGCGTGTACGCGTGTGGGATGATCACTGCCAGGGATATGACCAAGGCG
ATGAGGTGGCTCAATGGCTCTCGACGTTCTTGGAGGAGGTATATGTGCTA
CACAACGGGATGATGTGAATATTGTGGGAACATGAGATGCCCATTTTATT
CTTTTTATCTTTATCTTTCATCTATTATCCTCCCTACAGGAGGACTTGCG
GTTGGTGCGGATCGATGATAAAGAACGCCGCCAGGTCGAATTGGCTTTTG
CGCCGCGCGGGAGCATCACAGGTGAGTGAAGCGCATAGTGACGGAGGCAG
ATATATACTAAGCATATTTGCCTCTAAGTATCTATTTGTCTCCCATTACT
AACACATGTCCTCGGTTACGCCATTATTTTTACAGGCTTTGCCGACGGCT
TTCCCTTCTTGCTGGCCAACCAAAGCTCTCTGGACGACTTGAACGATCGC
CTGCCCACACCTATCCCTATGGCTCGCTTCCGACCTAAGTAAGTTCTCAT
CTGGCTTCAGAGAAGCGGAAACGTGCGGTTCATTCATGTTTTGGATGCTA
TTTTTTCTGCGTCTTGGTCATAAACAGTATCGTCGTGGGGGGCCCAGCTG
CCTTCGACGAGGATAAGTGGGATAAAATTGCGATTGGCGACATCCGCCTT
CGTGTAGTTAAGCCTTGCTCTCGATGCAAGATCCCCAACACGGATCAGGA
GACTGCCGAGGTTGCGAAGGAACCCGCAGAGACGCTTAAGAAGTTCAGGT
GAGTGCTGCTCGGGGAAGCAAATGTCAAAGAGTGATATACATGAGCTGCA
AGAGGTTTGCGCAACTTTGTATGCCGTGTCATTGGAGTCAGACAAACCAA
TTATTACCGGCAATCACACACACACACACATCTGTAAATATATCATAGGA
CGGGTGCCATTCTAGGCATTGGATATGGGGGAAAAGACGAGTTTTACTTT
GCTGAAAACCTAATTCATGACAGCAAAAAAAAAACGGGCGTTGTTTCCGT
GGGTGATCCCTTGAGAGTCTTCACTTGAGAAGATGAAAAAATAAGATAGT
AAGAAAGGGGGATTGAAGTATGATTCGCAACTTGCTTATTGAGAAGTATT
CGGGTTCAAGTCAGTGTAAAAAGAAAAGCTGTGTGCCAAAGTGTTGA
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Coding sequence (CDS) from alignment at chr1:834198..836244+

>NO01G03160.1 ID=NO01G03160.1|Name=NO01G03160.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr1:834198..836244+ (Nannochloropsis oceanica)
ATGGAGCACACCAAAGGCACGCGGGTCTTGGCGGCAGCAGCTACCTGTGC
CACAGGAATTCTGCTCTACGTGACTTACAAGGGCTGGCTCGCGATATGTA
AAAAGGAGGAGGAAAAGGAAGAAGAGATTGGTAAAGTAATCTCGCTTTAC
GTCTACCCAGTCAAGTCCTGCAAGGGCATCGAGGTTCAAGCATCTCTCGT
GGAAGCCCGAGGGTTGATGTTGGACCGGCTGTGGATGGTTACGACGTCGA
CAGGCACATTTCGAACTCAACGCCAGATCCCCAAGATGGCGTTGATCCAG
CCCAATCTACCATCGTCCTTGTCTGCGCCCTTGGAACTGAATGCTCCCGA
CATGCCCACATGCGTTGTCCCAGTGTGGACGACAGGAAAGCAAGTGCGTG
TACGCGTGTGGGATGATCACTGCCAGGGATATGACCAAGGCGATGAGGTG
GCTCAATGGCTCTCGACGTTCTTGGAGGAGGAGGACTTGCGGTTGGTGCG
GATCGATGATAAAGAACGCCGCCAGGTCGAATTGGCTTTTGCGCCGCGCG
GGAGCATCACAGGCTTTGCCGACGGCTTTCCCTTCTTGCTGGCCAACCAA
AGCTCTCTGGACGACTTGAACGATCGCCTGCCCACACCTATCCCTATGGC
TCGCTTCCGACCTAATATCGTCGTGGGGGGCCCAGCTGCCTTCGACGAGG
ATAAGTGGGATAAAATTGCGATTGGCGACATCCGCCTTCGTGTAGTTAAG
CCTTGCTCTCGATGCAAGATCCCCAACACGGATCAGGAGACTGCCGAGGT
TGCGAAGGAACCCGCAGAGACGCTTAAGAAGTTCAGGACGGGTGCCATTC
TAGGCATTGGATATGGGGGAAAAGACGAGTTTTACTTTGCTGAAAACCTA
ATTCATGACAGCAAAAAAAAAACGGGCGTTGTTTCCGTGGGTGATCCCTT
GAGAGTCTTCACTTGA
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Synonyms
Publications