NO01G02960.1, NO01G02960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02960.1
Unique NameNO01G02960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1074
Alignment locationchr1:777132..778321 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:777132..778321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02960.1 vs.
Match: EWM29223.1 (e3 ubiquitin ligase [Nannochloropsis gaditana])

HSP 1 Score: 312.4 bits (799), Expect = 1.800e-81
Identity = 182/360 (50.56%), Postives = 225/360 (62.50%), Query Frame = 0 
Query:   13 RHCADCDQHYETRDRLCPTCGAAFV-PTANPSAQPDPWFAGGGYPGDDLPISRPEREAQQQFGDAAWLEGRPDINNLPEAMQQRILELING-------HGLDVE-----GREGGPGERNGLSEEDIAKLPLSQLHTTSSMLMSVNITLESGDGQPPLTMECIPGSFSPIPSKGFQFQLIQADPLLADVLPLRNKGACQGKVLVTQRGKQTFGAMLVAARAAGALGVVVINSVSLWPYLMRDGKGEAK----IEAGKEEGQIADCFIVMVSQAHGEELLRRLASPAPVDTTATTVNAAALTGCLAVTHVERECLICIQAFEESDTILRLPCQHNYHEECARKWLSLRRTCPACRIEVKPRR 356
            + C DC+Q Y+TRDRLCP CGAAF  P A  SA                P+ R + E   +   +   +G     +L E +  RIL L  G        G D++      R  G G  NGLS+EDI +LP SQLH+TSSML+SV +TLES + +  +TMECIPGSFSPIP  G    L+   PL AD LPLR++   + KVLV QRGKQTFGAML AAR   A GVVV+NS+ LWPYLMRDG+GEA+    + A   E + A CFIVMVSQ HG+ELLRRL +    + T        L   LA + VERECLICI +F E +TILRLPCQH+YH +CARKWL+L++TCPACR ++K RR
Sbjct:    7 KRCDDCNQTYDTRDRLCPICGAAFPNPVAPASAH--------------APLLRLQSEQANEPSSSHAFQGE-ITTHLAERL--RILLLQGGWIGESDAFGGDIDLERLLSRGDGLGGGNGLSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTADALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETP----GKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRR 345
The following BLAST results are available for this feature:
BLAST of NO01G02960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29223.11.800e-8150.56e3 ubiquitin ligase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02960NO01G02960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02960.1NO01G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02960.1.cds1NO01G02960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02960.1.cds2NO01G02960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02960.1 ID=NO01G02960.1|Name=NO01G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp
ATGGCAACGCTGCGGTCGACGACGACGACGCGCCTCAGGCACTGCGCCGA
CTGCGACCAGCACTATGAAACGCGGGATCGACTCTGCCCGACGTGTGGCG
CCGCCTTTGTTCCCACAGCAAATCCGTCAGCGCAACCTGACCCGTGGTTT
GCAGGAGGAGGCTACCCAGGGGACGACCTGCCAATTTCCAGACCAGAGAG
AGAAGCACAACAGCAATTTGGTGATGCAGCGTGGCTCGAGGGTCGTCCAG
ACATAAATAATCTACCAGAGGCGATGCAGCAGCGCATACTTGAGCTGATC
AATGGCCATGGCCTTGATGTAGAAGGCAGGGAGGGCGGCCCAGGCGAGCG
GAATGGGTTGAGCGAGGAGGACATTGCCAAGCTCCCTCTCTCCCAATTAC
ACACCACTTCCTCCATGCTCATGTCTGTGAACATAACCTTGGAGTCGGGC
GACGGCCAGCCGCCTCTCACGATGGAGTGCATCCCCGGCTCATTTTCTCC
GATCCCGTCGAAGGGCTTCCAATTTCAATTAATCCAAGCGGACCCCTTAC
TGGCTGACGTGTTGCCGTTGCGCAACAAGGGAGCATGTCAAGGCAAGGTG
CTCGTTACACAGAGGGGGAAACAGACGTTTGGGGCCATGCTGGTGGCGGC
AAGAGCAGCGGGGGCTCTTGGTGTGGTGGTGATTAATTCAGTATCGTTGT
GGCCGTACCTCATGCGAGATGGGAAAGGCGAGGCTAAGATTGAGGCAGGG
AAGGAGGAAGGACAAATTGCGGACTGCTTTATTGTCATGGTTTCCCAAGC
TCATGGGGAGGAGCTTTTGCGTCGCTTGGCTTCTCCTGCTCCTGTTGATA
CAACAGCTACTACCGTTAATGCTGCTGCTTTGACTGGTTGTCTGGCGGTT
ACGCATGTGGAAAGGGAATGCTTGATTTGCATACAGGCTTTCGAGGAGAG
TGACACTATATTACGGCTACCATGTCAACATAACTACCACGAGGAATGTG
CGCGAAAATGGCTGAGCCTGCGAAGGACTTGCCCGGCCTGTCGGATTGAG
GTGAAGCCTCGGAGGGAGGGGTGA
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protein sequence of NO01G02960.1

>NO01G02960.1-protein ID=NO01G02960.1-protein|Name=NO01G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MATLRSTTTTRLRHCADCDQHYETRDRLCPTCGAAFVPTANPSAQPDPWF
AGGGYPGDDLPISRPEREAQQQFGDAAWLEGRPDINNLPEAMQQRILELI
NGHGLDVEGREGGPGERNGLSEEDIAKLPLSQLHTTSSMLMSVNITLESG
DGQPPLTMECIPGSFSPIPSKGFQFQLIQADPLLADVLPLRNKGACQGKV
LVTQRGKQTFGAMLVAARAAGALGVVVINSVSLWPYLMRDGKGEAKIEAG
KEEGQIADCFIVMVSQAHGEELLRRLASPAPVDTTATTVNAAALTGCLAV
THVERECLICIQAFEESDTILRLPCQHNYHEECARKWLSLRRTCPACRIE
VKPRREG*
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mRNA from alignment at chr1:777132..778321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02960.1 ID=NO01G02960.1|Name=NO01G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1190bp|location=Sequence derived from alignment at chr1:777132..778321- (Nannochloropsis oceanica)
ATGGCAACGCTGCGGTCGACGACGACGACGCGCCTCAGGCACTGCGCCGA
CTGCGACCAGCACTATGAAACGCGGGATCGACTCTGCCCGACGTGTGGCG
CCGCCTTTGTTCCCACAGCAAATCCGTCAGCGCAACCTGACCCGTGGTTT
GCAGGAGGAGGCTACCCAGGGGACGACCTGCCAATTTCCAGACCAGAGAG
AGAAGCACAACAGCAATTTGGTGATGCAGCGTGGCTCGAGGGTCGTCCAG
ACATAAATAATCTACCAGAGGCGATGCAGCAGCGCATACTTGAGCTGATC
AATGGCCATGGCCTTGATGTAGAAGGCAGGGAGGGCGGCCCAGGCGAGCG
GAATGGGTTGAGCGAGGAGGACATTGCCAAGCTCCCTCTCTCCCAATTAC
ACACCACTTCCTCCATGCTCATGTCTGGTACGTTAGTCTGTAGAGCGTGC
TTGCGTCTGAGTGTCGGAAGTGAAAGTGCCCTTAACAGACAAACGAGTTA
CCCTCCCATTCTCTTCTTCCATTCCCTGCACCTCCTCTCACAGTGAACAT
AACCTTGGAGTCGGGCGACGGCCAGCCGCCTCTCACGATGGAGTGCATCC
CCGGCTCATTTTCTCCGATCCCGTCGAAGGGCTTCCAATTTCAATTAATC
CAAGCGGACCCCTTACTGGCTGACGTGTTGCCGTTGCGCAACAAGGGAGC
ATGTCAAGGCAAGGTGCTCGTTACACAGAGGGGGAAACAGACGTTTGGGG
CCATGCTGGTGGCGGCAAGAGCAGCGGGGGCTCTTGGTGTGGTGGTGATT
AATTCAGTATCGTTGTGGCCGTACCTCATGCGAGATGGGAAAGGCGAGGC
TAAGATTGAGGCAGGGAAGGAGGAAGGACAAATTGCGGACTGCTTTATTG
TCATGGTTTCCCAAGCTCATGGGGAGGAGCTTTTGCGTCGCTTGGCTTCT
CCTGCTCCTGTTGATACAACAGCTACTACCGTTAATGCTGCTGCTTTGAC
TGGTTGTCTGGCGGTTACGCATGTGGAAAGGGAATGCTTGATTTGCATAC
AGGCTTTCGAGGAGAGTGACACTATATTACGGCTACCATGTCAACATAAC
TACCACGAGGAATGTGCGCGAAAATGGCTGAGCCTGCGAAGGACTTGCCC
GGCCTGTCGGATTGAGGTGAAGCCTCGGAGGGAGGGGTGA
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Coding sequence (CDS) from alignment at chr1:777132..778321-

>NO01G02960.1 ID=NO01G02960.1|Name=NO01G02960.1|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at chr1:777132..778321- (Nannochloropsis oceanica)
ATGGCAACGCTGCGGTCGACGACGACGACGCGCCTCAGGCACTGCGCCGA
CTGCGACCAGCACTATGAAACGCGGGATCGACTCTGCCCGACGTGTGGCG
CCGCCTTTGTTCCCACAGCAAATCCGTCAGCGCAACCTGACCCGTGGTTT
GCAGGAGGAGGCTACCCAGGGGACGACCTGCCAATTTCCAGACCAGAGAG
AGAAGCACAACAGCAATTTGGTGATGCAGCGTGGCTCGAGGGTCGTCCAG
ACATAAATAATCTACCAGAGGCGATGCAGCAGCGCATACTTGAGCTGATC
AATGGCCATGGCCTTGATGTAGAAGGCAGGGAGGGCGGCCCAGGCGAGCG
GAATGGGTTGAGCGAGGAGGACATTGCCAAGCTCCCTCTCTCCCAATTAC
ACACCACTTCCTCCATGCTCATGTCTGTGAACATAACCTTGGAGTCGGGC
GACGGCCAGCCGCCTCTCACGATGGAGTGCATCCCCGGCTCATTTTCTCC
GATCCCGTCGAAGGGCTTCCAATTTCAATTAATCCAAGCGGACCCCTTAC
TGGCTGACGTGTTGCCGTTGCGCAACAAGGGAGCATGTCAAGGCAAGGTG
CTCGTTACACAGAGGGGGAAACAGACGTTTGGGGCCATGCTGGTGGCGGC
AAGAGCAGCGGGGGCTCTTGGTGTGGTGGTGATTAATTCAGTATCGTTGT
GGCCGTACCTCATGCGAGATGGGAAAGGCGAGGCTAAGATTGAGGCAGGG
AAGGAGGAAGGACAAATTGCGGACTGCTTTATTGTCATGGTTTCCCAAGC
TCATGGGGAGGAGCTTTTGCGTCGCTTGGCTTCTCCTGCTCCTGTTGATA
CAACAGCTACTACCGTTAATGCTGCTGCTTTGACTGGTTGTCTGGCGGTT
ACGCATGTGGAAAGGGAATGCTTGATTTGCATACAGGCTTTCGAGGAGAG
TGACACTATATTACGGCTACCATGTCAACATAACTACCACGAGGAATGTG
CGCGAAAATGGCTGAGCCTGCGAAGGACTTGCCCGGCCTGTCGGATTGAG
GTGAAGCCTCGGAGGGAGGGGTGA
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Synonyms
Publications