NO01G02950.1, NO01G02950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02950.1
Unique NameNO01G02950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1911
Alignment locationchr1:774547..776721 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:774547..776721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02950.1 vs.
Match: EWM29224.1 (Epsin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 657.9 bits (1696), Expect = 3.200e-185
Identity = 417/662 (62.99%), Postives = 499/662 (75.38%), Query Frame = 0 
Query:    1 MAGLVRYLGLALALVLLMLLNDAKKVGTSRSSG-LSGRAKSAAKASS-KKVSKSPVSSTGARRRQPPVEIYREEDEEEADDEDEEEDVMPPSSSRRSGG-GRAAPDFGRRAMRAGSKSRHSYVEEEEEDYD---EEEDEDEDYFDDEEEDEEDGEEEDLRDRRRYGIKPGGVKKRRGAPPPPPSKKGKGSSSSRS-RKSSRGGRYAGERGRKGGKALTYKPAGYGVAREPLQARVMRNVFFLTEKVQGMATKGKKLTREMKEYFSGDFESMLLKATRPDDARPPPEFIGAILDATGTFHRDEDVTSNSNPYRVTLRKIWAKMAENDWRTVAKALYLFHVLLRECEPDDVRIYKKVYAKMCREGCKKTKCRYFDVAAINAVDVLE--GVAGAEAALDRRAFISRYSKYVLQRAKTFTSKFEEMKVIGERDIIPKDLVGQLGKAEKVLASGLECALLEGEEEADSEVTLMCVELVARDVYDLFRLFHDKLRWAVDNEASAFEGADRAEVRKVLDRFKASYATHYPEVQHFLSSTAQLLALYGIRLRTKLEPVHRFDEEDEIAAAEAAAQAAVAAG-FEEEGEGMIEAGVAGGV----------------GGQVEEVVVVEEDKGEAKSNSRSKRRVMEEEEEEEEEEEEEDDEEDDEDEDEDEE 637
            MAG++R + LALAL+L++ +N+AKKVGTSRSSG + GRAK A KA+S ++ SKS  S+ GARRRQP VEIYREE+ E  D+ED E+D + P + R +G  G+  PDFG+RAM A  KSR  Y++E+E+ +    EE+D +ED ++D+E  +E G E D R+            K RGA     ++ G+  S  R  R  +   RY   RG+K GKAL YKP+GYGVAREPLQAR+MRNVFFLTEKVQGMA+KGKK+TRE+KEYFSGDFESMLLKATRPDDARPPPEFIGAILDAT TFHRDED+T+ SNPYRVTLRK+WAKMAE DWRTVAKALYLFHVLLRECEPDDVRIYKKV AKM REGCKK++ RYFD  AI+AVDV++  GV GA A LDRR FI+RYSKYVLQRAKTFTSKFEEMKVIG+R+I  KDLVGQLGKAEKVL+SGLECAL E EE+ADSEVTLMC ELVARDVYDLFRLFH+KLRWA+DN+A+AFEGADR+EV K+L+RF+ASYA  YP+VQ FL+ TAQLL +YGI+LRTKLEP HRF+EE            AVA G   E GE ++E  V G                  GG   EV    + +G      + +    EEEEEEEEEEEEE++EE+D+D+D+D+E
Sbjct:    1 MAGVLRCIFLALALLLVIFINEAKKVGTSRSSGGMPGRAKPAKKAASARRSSKSTFSTPGARRRQPSVEIYREEEAE--DEEDFEDDFLAPPTRRSTGTRGKKRPDFGKRAMGASHKSRRVYMDEKEDGFHGMAEEDDYEEDIYEDDEGGDEYGGELDGRE----------YMKARGARGRKAARYGRSRSRGREMRGPAPRSRYG--RGKK-GKALAYKPSGYGVAREPLQARMMRNVFFLTEKVQGMASKGKKMTRELKEYFSGDFESMLLKATRPDDARPPPEFIGAILDATATFHRDEDLTAGSNPYRVTLRKLWAKMAERDWRTVAKALYLFHVLLRECEPDDVRIYKKVCAKMSREGCKKSRSRYFDAGAISAVDVMDGAGVGGAGACLDRRDFIARYSKYVLQRAKTFTSKFEEMKVIGQREIDAKDLVGQLGKAEKVLSSGLECALGEAEEDADSEVTLMCAELVARDVYDLFRLFHEKLRWAIDNQAAAFEGADRSEVAKILERFQASYARLYPQVQQFLTQTAQLLGVYGIKLRTKLEPAHRFEEE------------AVAVGEMVEGGEDIVEGEVVGTATGDTATEAAEGAGEEGGGTASEVEASADARGPVSGRVQRREEEEEEEEEEEEEEEEEEEEENDDDDDDDDE 635
The following BLAST results are available for this feature:
BLAST of NO01G02950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29224.13.200e-18562.99Epsin-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02950NO01G02950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02950.1NO01G02950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02950.1.cds1NO01G02950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02950.1.cds2NO01G02950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02950.1 ID=NO01G02950.1|Name=NO01G02950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1911bp
ATGGCAGGCCTCGTTCGATACCTGGGACTGGCCCTTGCCCTAGTGCTGCT
TATGCTGCTGAATGATGCCAAGAAGGTGGGGACATCGCGCAGTAGTGGTT
TGTCGGGGCGGGCCAAGTCAGCGGCCAAAGCCAGCAGCAAGAAAGTGAGC
AAGTCGCCTGTGTCGTCGACAGGTGCCCGGAGAAGGCAACCACCAGTGGA
GATCTATCGAGAAGAAGACGAAGAGGAGGCGGATGACGAGGATGAGGAGG
AGGACGTGATGCCTCCCTCTTCGTCCCGCCGAAGCGGTGGCGGCCGGGCG
GCCCCAGATTTTGGCAGGCGCGCGATGCGCGCAGGTTCAAAGTCCCGGCA
TAGCTACGTGGAGGAAGAGGAGGAAGACTACGACGAGGAGGAAGATGAGG
ACGAGGACTATTTTGACGATGAGGAGGAGGACGAGGAGGATGGGGAGGAG
GAGGATTTGCGGGACCGCCGCCGTTATGGAATCAAGCCAGGAGGTGTAAA
GAAACGCCGTGGTGCCCCGCCTCCACCACCTTCAAAGAAGGGCAAGGGCA
GCAGCAGCAGCCGAAGTAGAAAGAGCTCGCGGGGAGGGCGGTATGCAGGA
GAGAGAGGCAGGAAGGGAGGGAAAGCGTTGACGTACAAGCCCGCCGGGTA
CGGGGTGGCCCGGGAGCCGCTCCAAGCGCGTGTAATGCGCAATGTTTTCT
TCCTGACTGAGAAGGTACAGGGTATGGCGACGAAGGGGAAGAAATTGACA
AGAGAAATGAAGGAGTATTTTAGTGGGGATTTTGAGAGCATGCTCTTAAA
GGCTACCAGGCCTGATGATGCCCGACCTCCCCCTGAATTCATCGGTGCGA
TCCTAGATGCAACTGGCACCTTTCATCGAGACGAGGATGTGACGAGTAAT
AGCAATCCATACCGTGTTACACTCCGGAAGATCTGGGCGAAGATGGCGGA
AAATGATTGGAGGACTGTCGCCAAGGCCCTTTACTTGTTTCATGTCTTGC
TCCGGGAGTGCGAGCCTGACGATGTGCGGATCTATAAGAAAGTTTACGCA
AAAATGTGTCGGGAAGGGTGTAAGAAGACCAAATGTCGTTATTTTGACGT
GGCGGCGATAAATGCTGTGGATGTTTTGGAGGGAGTAGCAGGAGCAGAAG
CTGCGTTGGATCGACGGGCGTTTATTTCTAGGTATAGCAAATATGTCTTG
CAGCGGGCGAAGACATTCACGTCGAAATTCGAGGAAATGAAGGTGATTGG
CGAGAGGGACATCATTCCTAAGGATTTGGTCGGGCAGTTGGGGAAGGCGG
AAAAGGTATTGGCATCGGGGTTGGAATGTGCGCTGCTGGAGGGGGAGGAG
GAGGCCGACAGCGAGGTGACGCTGATGTGTGTGGAGTTGGTCGCAAGGGA
CGTCTACGATTTATTCAGGCTCTTTCACGACAAGCTCCGCTGGGCTGTGG
ATAACGAGGCTTCGGCTTTCGAAGGCGCAGATAGAGCAGAAGTCCGCAAA
GTTCTTGATCGCTTCAAGGCAAGCTACGCGACACACTACCCGGAAGTTCA
GCATTTTCTCTCGAGCACCGCGCAGCTCTTGGCGTTATATGGGATTAGGC
TACGCACGAAACTCGAACCTGTCCATCGATTTGATGAAGAGGACGAGATA
GCTGCTGCGGAGGCGGCTGCTCAAGCTGCGGTGGCGGCGGGGTTTGAGGA
AGAGGGGGAGGGAATGATCGAAGCTGGGGTGGCAGGTGGGGTGGGAGGGC
AGGTCGAGGAAGTGGTTGTGGTAGAGGAGGACAAGGGAGAAGCAAAATCA
AACAGTCGAAGTAAGAGGAGAGTGATGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAAGAGGAGGAAGATGATGAGGAAGATGATGAGGATGAGGATGAGG
ATGAGGAGTAG
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protein sequence of NO01G02950.1

>NO01G02950.1-protein ID=NO01G02950.1-protein|Name=NO01G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=637bp
MAGLVRYLGLALALVLLMLLNDAKKVGTSRSSGLSGRAKSAAKASSKKVS
KSPVSSTGARRRQPPVEIYREEDEEEADDEDEEEDVMPPSSSRRSGGGRA
APDFGRRAMRAGSKSRHSYVEEEEEDYDEEEDEDEDYFDDEEEDEEDGEE
EDLRDRRRYGIKPGGVKKRRGAPPPPPSKKGKGSSSSRSRKSSRGGRYAG
ERGRKGGKALTYKPAGYGVAREPLQARVMRNVFFLTEKVQGMATKGKKLT
REMKEYFSGDFESMLLKATRPDDARPPPEFIGAILDATGTFHRDEDVTSN
SNPYRVTLRKIWAKMAENDWRTVAKALYLFHVLLRECEPDDVRIYKKVYA
KMCREGCKKTKCRYFDVAAINAVDVLEGVAGAEAALDRRAFISRYSKYVL
QRAKTFTSKFEEMKVIGERDIIPKDLVGQLGKAEKVLASGLECALLEGEE
EADSEVTLMCVELVARDVYDLFRLFHDKLRWAVDNEASAFEGADRAEVRK
VLDRFKASYATHYPEVQHFLSSTAQLLALYGIRLRTKLEPVHRFDEEDEI
AAAEAAAQAAVAAGFEEEGEGMIEAGVAGGVGGQVEEVVVVEEDKGEAKS
NSRSKRRVMEEEEEEEEEEEEEDDEEDDEDEDEDEE*
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mRNA from alignment at chr1:774547..776721+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02950.1 ID=NO01G02950.1|Name=NO01G02950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2175bp|location=Sequence derived from alignment at chr1:774547..776721+ (Nannochloropsis oceanica)
ATGGCAGGCCTCGTTCGATACCTGGGACTGGCCCTTGCCCTAGTGCTGCT
TATGCTGCTGAATGATGCCAAGAAGGTGGGGACATCGCGCAGTAGTGGTT
TGTCGGGGCGGGCCAAGTCAGCGGCCAAAGCCAGGTACGCAGGAGGGAAT
AGATGGGGCGGGGTGGTCGGAATGCGTACGGATACTTAACAATAAGGAGA
AGACCAAGCGACCGTGGAGATGGCACTCCACCCGCGCTTGCACGTGCGGC
AGATAGTGATACGCTTACGCAAAAGAAGGGTGTGCGGCCCTCCTCTCGTT
TTCGTTCGTGAGGTCGGAAGAGCTTTTTGATGATGATGAGCGGCTTAGAC
CACCAACCAACGACTTACCCTCCTTCTTAACACATGTACAATACACAGCA
GCAAGAAAGTGAGCAAGTCGCCTGTGTCGTCGACAGGTGCCCGGAGAAGG
CAACCACCAGTGGAGATCTATCGAGAAGAAGACGAAGAGGAGGCGGATGA
CGAGGATGAGGAGGAGGACGTGATGCCTCCCTCTTCGTCCCGCCGAAGCG
GTGGCGGCCGGGCGGCCCCAGATTTTGGCAGGCGCGCGATGCGCGCAGGT
TCAAAGTCCCGGCATAGCTACGTGGAGGAAGAGGAGGAAGACTACGACGA
GGAGGAAGATGAGGACGAGGACTATTTTGACGATGAGGAGGAGGACGAGG
AGGATGGGGAGGAGGAGGATTTGCGGGACCGCCGCCGTTATGGAATCAAG
CCAGGAGGTGTAAAGAAACGCCGTGGTGCCCCGCCTCCACCACCTTCAAA
GAAGGGCAAGGGCAGCAGCAGCAGCCGAAGTAGAAAGAGCTCGCGGGGAG
GGCGGTATGCAGGAGAGAGAGGCAGGAAGGGAGGGAAAGCGTTGACGTAC
AAGCCCGCCGGGTACGGGGTGGCCCGGGAGCCGCTCCAAGCGCGTGTAAT
GCGCAATGTTTTCTTCCTGACTGAGAAGGTACAGGGTATGGCGACGAAGG
GGAAGAAATTGACAAGAGAAATGAAGGAGTATTTTAGTGGGGATTTTGAG
AGCATGCTCTTAAAGGCTACCAGGCCTGATGATGCCCGACCTCCCCCTGA
ATTCATCGGTGCGATCCTAGATGCAACTGGCACCTTTCATCGAGACGAGG
ATGTGACGAGTAATAGCAATCCATACCGTGTTACACTCCGGAAGATCTGG
GCGAAGATGGCGGAAAATGATTGGAGGACTGTCGCCAAGGCCCTTTACTT
GTTTCATGTCTTGCTCCGGGAGTGCGAGCCTGACGATGTGCGGATCTATA
AGAAAGTTTACGCAAAAATGTGTCGGGAAGGGTGTAAGAAGACCAAATGT
CGTTATTTTGACGTGGCGGCGATAAATGCTGTGGATGTTTTGGAGGGAGT
AGCAGGAGCAGAAGCTGCGTTGGATCGACGGGCGTTTATTTCTAGGTATA
GCAAATATGTCTTGCAGCGGGCGAAGACATTCACGTCGAAATTCGAGGAA
ATGAAGGTGATTGGCGAGAGGGACATCATTCCTAAGGATTTGGTCGGGCA
GTTGGGGAAGGCGGAAAAGGTATTGGCATCGGGGTTGGAATGTGCGCTGC
TGGAGGGGGAGGAGGAGGCCGACAGCGAGGTGACGCTGATGTGTGTGGAG
TTGGTCGCAAGGGACGTCTACGATTTATTCAGGCTCTTTCACGACAAGCT
CCGCTGGGCTGTGGATAACGAGGCTTCGGCTTTCGAAGGCGCAGATAGAG
CAGAAGTCCGCAAAGTTCTTGATCGCTTCAAGGCAAGCTACGCGACACAC
TACCCGGAAGTTCAGCATTTTCTCTCGAGCACCGCGCAGCTCTTGGCGTT
ATATGGGATTAGGCTACGCACGAAACTCGAACCTGTCCATCGATTTGATG
AAGAGGACGAGATAGCTGCTGCGGAGGCGGCTGCTCAAGCTGCGGTGGCG
GCGGGGTTTGAGGAAGAGGGGGAGGGAATGATCGAAGCTGGGGTGGCAGG
TGGGGTGGGAGGGCAGGTCGAGGAAGTGGTTGTGGTAGAGGAGGACAAGG
GAGAAGCAAAATCAAACAGTCGAAGTAAGAGGAGAGTGATGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAAGAGGAGGAAGATGATGAGGAAGATGATGA
GGATGAGGATGAGGATGAGGAGTAG
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Coding sequence (CDS) from alignment at chr1:774547..776721+

>NO01G02950.1 ID=NO01G02950.1|Name=NO01G02950.1|organism=Nannochloropsis oceanica|type=CDS|length=1911bp|location=Sequence derived from alignment at chr1:774547..776721+ (Nannochloropsis oceanica)
ATGGCAGGCCTCGTTCGATACCTGGGACTGGCCCTTGCCCTAGTGCTGCT
TATGCTGCTGAATGATGCCAAGAAGGTGGGGACATCGCGCAGTAGTGGTT
TGTCGGGGCGGGCCAAGTCAGCGGCCAAAGCCAGCAGCAAGAAAGTGAGC
AAGTCGCCTGTGTCGTCGACAGGTGCCCGGAGAAGGCAACCACCAGTGGA
GATCTATCGAGAAGAAGACGAAGAGGAGGCGGATGACGAGGATGAGGAGG
AGGACGTGATGCCTCCCTCTTCGTCCCGCCGAAGCGGTGGCGGCCGGGCG
GCCCCAGATTTTGGCAGGCGCGCGATGCGCGCAGGTTCAAAGTCCCGGCA
TAGCTACGTGGAGGAAGAGGAGGAAGACTACGACGAGGAGGAAGATGAGG
ACGAGGACTATTTTGACGATGAGGAGGAGGACGAGGAGGATGGGGAGGAG
GAGGATTTGCGGGACCGCCGCCGTTATGGAATCAAGCCAGGAGGTGTAAA
GAAACGCCGTGGTGCCCCGCCTCCACCACCTTCAAAGAAGGGCAAGGGCA
GCAGCAGCAGCCGAAGTAGAAAGAGCTCGCGGGGAGGGCGGTATGCAGGA
GAGAGAGGCAGGAAGGGAGGGAAAGCGTTGACGTACAAGCCCGCCGGGTA
CGGGGTGGCCCGGGAGCCGCTCCAAGCGCGTGTAATGCGCAATGTTTTCT
TCCTGACTGAGAAGGTACAGGGTATGGCGACGAAGGGGAAGAAATTGACA
AGAGAAATGAAGGAGTATTTTAGTGGGGATTTTGAGAGCATGCTCTTAAA
GGCTACCAGGCCTGATGATGCCCGACCTCCCCCTGAATTCATCGGTGCGA
TCCTAGATGCAACTGGCACCTTTCATCGAGACGAGGATGTGACGAGTAAT
AGCAATCCATACCGTGTTACACTCCGGAAGATCTGGGCGAAGATGGCGGA
AAATGATTGGAGGACTGTCGCCAAGGCCCTTTACTTGTTTCATGTCTTGC
TCCGGGAGTGCGAGCCTGACGATGTGCGGATCTATAAGAAAGTTTACGCA
AAAATGTGTCGGGAAGGGTGTAAGAAGACCAAATGTCGTTATTTTGACGT
GGCGGCGATAAATGCTGTGGATGTTTTGGAGGGAGTAGCAGGAGCAGAAG
CTGCGTTGGATCGACGGGCGTTTATTTCTAGGTATAGCAAATATGTCTTG
CAGCGGGCGAAGACATTCACGTCGAAATTCGAGGAAATGAAGGTGATTGG
CGAGAGGGACATCATTCCTAAGGATTTGGTCGGGCAGTTGGGGAAGGCGG
AAAAGGTATTGGCATCGGGGTTGGAATGTGCGCTGCTGGAGGGGGAGGAG
GAGGCCGACAGCGAGGTGACGCTGATGTGTGTGGAGTTGGTCGCAAGGGA
CGTCTACGATTTATTCAGGCTCTTTCACGACAAGCTCCGCTGGGCTGTGG
ATAACGAGGCTTCGGCTTTCGAAGGCGCAGATAGAGCAGAAGTCCGCAAA
GTTCTTGATCGCTTCAAGGCAAGCTACGCGACACACTACCCGGAAGTTCA
GCATTTTCTCTCGAGCACCGCGCAGCTCTTGGCGTTATATGGGATTAGGC
TACGCACGAAACTCGAACCTGTCCATCGATTTGATGAAGAGGACGAGATA
GCTGCTGCGGAGGCGGCTGCTCAAGCTGCGGTGGCGGCGGGGTTTGAGGA
AGAGGGGGAGGGAATGATCGAAGCTGGGGTGGCAGGTGGGGTGGGAGGGC
AGGTCGAGGAAGTGGTTGTGGTAGAGGAGGACAAGGGAGAAGCAAAATCA
AACAGTCGAAGTAAGAGGAGAGTGATGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAAGAGGAGGAAGATGATGAGGAAGATGATGAGGATGAGGATGAGG
ATGAGGAGTAG
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Synonyms
Publications