NO01G02910.1, NO01G02910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02910.1
Unique NameNO01G02910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1722
Alignment locationchr1:758971..761066 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:758971..761066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02910.1 vs.
Match: EWM29112.1 (amidase [Nannochloropsis gaditana])

HSP 1 Score: 479.2 bits (1232), Expect = 1.800e-131
Identity = 243/342 (71.05%), Postives = 276/342 (80.70%), Query Frame = 0 
Query:  231 LALGTDQGGSIRVPASWCGCVGLKPTFGLVPYTGIASHEFTLDHVGPMARTVQDTALLLEATAGLDPMGRDARQPPTLASLSLPRYSVLATGEVSGVRVGVLREGLENCEEDVKEATWAAAMGLRKAGAVVEEISIPMHRDSAALWLPLCLEGGHATRMEGERGFKGFYPVSLTQAYFRGFRLQAAELSCTNKYYVLFGEYVRETYGNQYYQKCQNLLPALRQAYDDVLVQQ----RVDVLLLPTLPIKPQRLPKAGMTPAEGITHAWAALQNIAAFDLTGHPALSVNAGVSSPASSSSGRAGKKGNGGLPIGVQVVGRRWEDATVLNVGRAIELGSGLKPL 569
            +ALGTDQGGSIR+PASWCGCVGLKPTFGLVPYTG+ SHEFTLDH GPMARTV DTALLLEA AGLDP+ RDARQP  +A +  P+YS LATGEVSG+R+G+L EGLENCE+DV+  T AAA  LR AGA VEE+SIP+HRDSAA+WLPLCLEGGHATRM+GERGF+G+YPVSL QAYFRGF LQAAELS TNKYY+LFGEYV++ YG QYYQKCQNL+PAL QAYD++L        +D LLLPT   KPQ LP+A MT AE IT+AW+ LQN AAFDLTGHPALS+NAG S            +G   LP+GVQ+VGRRW DATVLNV RAIE+     PL
Sbjct:    1 MALGTDQGGSIRLPASWCGCVGLKPTFGLVPYTGVCSHEFTLDHAGPMARTVLDTALLLEAIAGLDPVRRDARQPLDMAPV--PQYSGLATGEVSGMRIGLLLEGLENCEDDVRHHTMAAADMLRGAGARVEEVSIPLHRDSAAIWLPLCLEGGHATRMQGERGFRGYYPVSLQQAYFRGFHLQAAELSFTNKYYILFGEYVQKAYGAQYYQKCQNLVPALTQAYDELLANPSSGGAMDALLLPTTTTKPQLLPRADMTAAECITNAWSGLQNTAAFDLTGHPALSINAGFS------------EGPVQLPVGVQIVGRRWGDATVLNVARAIEMCRKPTPL 328
The following BLAST results are available for this feature:
BLAST of NO01G02910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29112.11.800e-13171.05amidase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02910NO01G02910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02910.1NO01G02910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02910.1.cds1NO01G02910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02910.1.cds2NO01G02910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02910.1.cds3NO01G02910.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02910.1 ID=NO01G02910.1|Name=NO01G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1722bp
ATGCCGTCCAGCAACCTGTGCTTCGTCTCGTCGTCCTCTTCCAAGCCCCC
TTCGTCGTCCAAGGTCAAGAACCCAGCCCGGGCAGCGTACAAGACACCTG
CAGTGCGGCTGCCCAGTCTTGATCGCTTACAAGGAATCAATGAGGATTGG
GGTTTGGAGCTGAATGATGACGAGGTGGAGGGCCTTCGAGGGTGCATGAA
GCACGCAGTAGAGGCTTACCAACGCGTCGATGAACTAGCCAACAGCCGCA
ACAGCTCTACCTTCGCACCCCTGGCCCAGTTCCCCCGTATACCGGGTGGG
AGCCGCCCAAGTCCTGAGGAAAATTTTTGTAATGCCTGGTACATGGAGAC
TGACATCCGCGGCCGGACAAGCAAGGAAGATGAGAAGCAGCTTTTACTAG
AGGGAAAGACGGTCGCAATTAAGGACACGATCGCCGTGGCGGGCGTGCCG
ATGATGAATGGCTCGCGTATTCTAGAAGGCTACACACCAGAGTTTGAAGC
CACAGTTGTGACGCGGGTCCTGGAGGCAGGCGGGATTATCAAGGGAAAGG
CCGTTGCGGAGGACTTGTGTTGTTCTGCTAGCTCCTTTGCGACAGCTCTA
GCACCCGTACGGAACCCTTGGAATGAAGAGTATGCGGCCGGTGGGTCCAG
CTCAGGCTGTGGAGCTTTGGTAGGAGGCGACATCGTCGATCTCGCCCTCG
GCACCGACCAAGGGGGTTCCATCCGGGTACCTGCCTCTTGGTGTGGCTGT
GTGGGTCTCAAACCCACCTTTGGCCTGGTGCCTTACACTGGTATTGCCTC
CCACGAGTTCACCCTCGACCACGTCGGGCCTATGGCGAGGACCGTCCAAG
ACACAGCCCTCCTCCTTGAGGCTACTGCCGGTCTTGACCCGATGGGCAGG
GACGCTCGACAGCCACCCACTCTAGCCTCTTTGTCGTTGCCGCGGTATTC
AGTGTTGGCCACGGGAGAGGTTTCTGGTGTGAGGGTGGGGGTGCTTAGGG
AGGGATTGGAGAACTGCGAGGAGGATGTGAAGGAGGCGACGTGGGCAGCG
GCGATGGGGTTGAGAAAAGCGGGTGCGGTGGTGGAGGAGATTTCGATCCC
GATGCATCGCGATAGTGCTGCTTTGTGGCTGCCGTTGTGCTTGGAGGGGG
GGCATGCGACACGTATGGAGGGGGAGAGGGGGTTCAAGGGCTTTTACCCC
GTTTCACTCACACAGGCTTACTTCCGGGGCTTCCGGCTTCAGGCAGCTGA
ATTGAGTTGTACGAATAAATATTACGTCTTGTTTGGGGAGTACGTGAGGG
AGACCTATGGGAATCAGTACTATCAAAAGTGTCAGAATTTACTCCCGGCG
CTCAGGCAGGCCTACGATGACGTCCTGGTGCAGCAAAGGGTTGATGTGCT
CCTCCTCCCCACCTTACCCATCAAGCCCCAACGTTTACCCAAGGCTGGAA
TGACGCCCGCCGAGGGCATCACGCATGCCTGGGCCGCACTCCAGAACATT
GCGGCGTTTGATCTAACCGGCCACCCGGCCTTGAGCGTTAATGCTGGGGT
TTCTTCCCCCGCTTCGTCGTCCTCCGGAAGGGCGGGCAAGAAGGGGAATG
GGGGGTTGCCGATTGGCGTGCAAGTGGTTGGAAGACGATGGGAGGATGCC
ACTGTACTGAATGTGGGGCGGGCTATTGAATTGGGGTCAGGACTCAAGCC
CTTGCAGTCAGGGGGAGGGTGA
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protein sequence of NO01G02910.1

>NO01G02910.1-protein ID=NO01G02910.1-protein|Name=NO01G02910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=574bp
MPSSNLCFVSSSSSKPPSSSKVKNPARAAYKTPAVRLPSLDRLQGINEDW
GLELNDDEVEGLRGCMKHAVEAYQRVDELANSRNSSTFAPLAQFPRIPGG
SRPSPEENFCNAWYMETDIRGRTSKEDEKQLLLEGKTVAIKDTIAVAGVP
MMNGSRILEGYTPEFEATVVTRVLEAGGIIKGKAVAEDLCCSASSFATAL
APVRNPWNEEYAAGGSSSGCGALVGGDIVDLALGTDQGGSIRVPASWCGC
VGLKPTFGLVPYTGIASHEFTLDHVGPMARTVQDTALLLEATAGLDPMGR
DARQPPTLASLSLPRYSVLATGEVSGVRVGVLREGLENCEEDVKEATWAA
AMGLRKAGAVVEEISIPMHRDSAALWLPLCLEGGHATRMEGERGFKGFYP
VSLTQAYFRGFRLQAAELSCTNKYYVLFGEYVRETYGNQYYQKCQNLLPA
LRQAYDDVLVQQRVDVLLLPTLPIKPQRLPKAGMTPAEGITHAWAALQNI
AAFDLTGHPALSVNAGVSSPASSSSGRAGKKGNGGLPIGVQVVGRRWEDA
TVLNVGRAIELGSGLKPLQSGGG*
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mRNA from alignment at chr1:758971..761066+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02910.1 ID=NO01G02910.1|Name=NO01G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2096bp|location=Sequence derived from alignment at chr1:758971..761066+ (Nannochloropsis oceanica)
ATGCCGTCCAGCAACCTGTGCTTCGTCTCGTCGTCCTCTTCCAAGCCCCC
TTCGTCGTCCAAGGTCAAGAACCCAGCCCGGGCAGCGTACAAGACACCTG
CAGTGCGGCTGCCCAGTCTTGATCGCTTACAAGGAATCAATGAGGATTGG
GGTTTGGAGCTGAATGATGACGAGGTGGAGGGCCTTCGAGGGTGCATGAA
GCACGCAGTAGAGGCTTACCAACGCGTCGATGAACTAGCCAACAGCCGCA
ACAGCTCTACCTTCGCACCCCTGGCCCAGTTCCCCCGTATACCGGGTGGG
AGCCGCCCAAGTCCTGAGGAAAATTTTTGTAATGCCTGGTACATGGAGAC
TGACATCCGCGGCCGGACAAGCAAGGAAGATGAGAAGCAGCTTTTACTAG
AGGGAAAGACGGTCGCAATTAAGGACACGATCGCCGTGGCGGGCGTGCCG
ATGATGAATGGCTCGCGTATTCTAGAAGGCTACACACCAGAGTTTGAAGC
CACAGTTGTGACGCGGGTCCTGGAGGCAGGCGGGATTATCAAGGGAAAGG
CCGTTGCGGAGGACTTGTGTTGTTCTGCTAGCTCCTTTGCGACAGCTCTA
GCACCCGTACGGAACCCTTGGAATGAAGAGTATGCGGCCGGTGGGTCCAG
CTCAGGCTGTGGAGCTTTGGTACGTTAGGACAAAGGACAGCAGCTGGACG
TGCTTGATTGTATGTTATGGTGCGAGTTGCCGCATCACAGTCCTCTGACC
GACAGAGCTTTCATCCTTCCAAAAATTCTCCTCACATTTCCTCCTTCTCT
ACTTCTCATCTACACCACACCACAGGTAGGAGGCGACATCGTCGATCTCG
CCCTCGGCACCGACCAAGGGGGTTCCATCCGGGTACCTGCCTCTTGGTGT
GGCTGTGTGGGTCTCAAACCCACCTTTGGCCTGGTGCCTTACACTGGTAT
TGCCTCCCACGAGTTCACCCTCGACCACGTCGGGCCTATGGCGAGGACCG
TCCAAGACACAGCCCTCCTCCTTGAGGCTACTGCCGGTCTTGACCCGATG
GGCAGGGACGCTCGACAGCCACCCACTCTAGCCTCTTTGTCGTTGCCGCG
GTATTCAGTGTTGGCCACGGGAGAGGTTTCTGGTGTGAGGGTGGGGGTGC
TTAGGGAGGGATTGGAGAACTGCGAGGAGGATGTGAAGGAGGCGACGTGG
GCAGCGGCGATGGGGTTGAGAAAAGCGGGTGCGGTGGTGGAGGAGATTTC
GATCCCGATGCATCGCGATAGTGCTGCTTTGTGGCTGCCGTTGTGCTTGG
AGGGGGGGCATGCGACACGTATGGAGGGGGAGAGGGGGTTCAAGGGCTTT
TACCCCGTTTCACTCACACAGGCTTACTTCCGGGGCTTCCGGCTTCAGGC
AGCTGAATTGAGTTGTACGAATAAATATTACGTCTTGTTTGGGGAGTACG
TGAGGGAGACCTATGGGAATCAGTACTATCAAAAGTGTCAGAATTTACTC
CCGGCGCTCAGGCAGGCCTACGATGACGTCCTGGTGCAGCAAAGGGTTGA
TGTGCTCCTCCTCCCCACCTTACCCATCAAGCCCCAACGTTTACCCAAGG
CTGGAATGACGCCCGCCGAGGTAAGTCTGCTACTTCCCTCCCTCCCTCCC
TCCCTCCCTCCTTCCCTTTCTCATCCCATGCCCGCCCACCAAGCCCAAGC
TCATGCCACCGGCTGGAAGGACCCCACGAGGGTTAAATCCGTCCTTTCCC
CTCTCTCCCTTTCCCTTTCTCCCTGAATTGAAGTCCTTGCACTCATCATC
CCTTATCTTCTTGCGTCTCTCCCGTGCTCCTTTTTTAGGGCATCACGCAT
GCCTGGGCCGCACTCCAGAACATTGCGGCGTTTGATCTAACCGGCCACCC
GGCCTTGAGCGTTAATGCTGGGGTTTCTTCCCCCGCTTCGTCGTCCTCCG
GAAGGGCGGGCAAGAAGGGGAATGGGGGGTTGCCGATTGGCGTGCAAGTG
GTTGGAAGACGATGGGAGGATGCCACTGTACTGAATGTGGGGCGGGCTAT
TGAATTGGGGTCAGGACTCAAGCCCTTGCAGTCAGGGGGAGGGTGA
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Coding sequence (CDS) from alignment at chr1:758971..761066+

>NO01G02910.1 ID=NO01G02910.1|Name=NO01G02910.1|organism=Nannochloropsis oceanica|type=CDS|length=1722bp|location=Sequence derived from alignment at chr1:758971..761066+ (Nannochloropsis oceanica)
ATGCCGTCCAGCAACCTGTGCTTCGTCTCGTCGTCCTCTTCCAAGCCCCC
TTCGTCGTCCAAGGTCAAGAACCCAGCCCGGGCAGCGTACAAGACACCTG
CAGTGCGGCTGCCCAGTCTTGATCGCTTACAAGGAATCAATGAGGATTGG
GGTTTGGAGCTGAATGATGACGAGGTGGAGGGCCTTCGAGGGTGCATGAA
GCACGCAGTAGAGGCTTACCAACGCGTCGATGAACTAGCCAACAGCCGCA
ACAGCTCTACCTTCGCACCCCTGGCCCAGTTCCCCCGTATACCGGGTGGG
AGCCGCCCAAGTCCTGAGGAAAATTTTTGTAATGCCTGGTACATGGAGAC
TGACATCCGCGGCCGGACAAGCAAGGAAGATGAGAAGCAGCTTTTACTAG
AGGGAAAGACGGTCGCAATTAAGGACACGATCGCCGTGGCGGGCGTGCCG
ATGATGAATGGCTCGCGTATTCTAGAAGGCTACACACCAGAGTTTGAAGC
CACAGTTGTGACGCGGGTCCTGGAGGCAGGCGGGATTATCAAGGGAAAGG
CCGTTGCGGAGGACTTGTGTTGTTCTGCTAGCTCCTTTGCGACAGCTCTA
GCACCCGTACGGAACCCTTGGAATGAAGAGTATGCGGCCGGTGGGTCCAG
CTCAGGCTGTGGAGCTTTGGTAGGAGGCGACATCGTCGATCTCGCCCTCG
GCACCGACCAAGGGGGTTCCATCCGGGTACCTGCCTCTTGGTGTGGCTGT
GTGGGTCTCAAACCCACCTTTGGCCTGGTGCCTTACACTGGTATTGCCTC
CCACGAGTTCACCCTCGACCACGTCGGGCCTATGGCGAGGACCGTCCAAG
ACACAGCCCTCCTCCTTGAGGCTACTGCCGGTCTTGACCCGATGGGCAGG
GACGCTCGACAGCCACCCACTCTAGCCTCTTTGTCGTTGCCGCGGTATTC
AGTGTTGGCCACGGGAGAGGTTTCTGGTGTGAGGGTGGGGGTGCTTAGGG
AGGGATTGGAGAACTGCGAGGAGGATGTGAAGGAGGCGACGTGGGCAGCG
GCGATGGGGTTGAGAAAAGCGGGTGCGGTGGTGGAGGAGATTTCGATCCC
GATGCATCGCGATAGTGCTGCTTTGTGGCTGCCGTTGTGCTTGGAGGGGG
GGCATGCGACACGTATGGAGGGGGAGAGGGGGTTCAAGGGCTTTTACCCC
GTTTCACTCACACAGGCTTACTTCCGGGGCTTCCGGCTTCAGGCAGCTGA
ATTGAGTTGTACGAATAAATATTACGTCTTGTTTGGGGAGTACGTGAGGG
AGACCTATGGGAATCAGTACTATCAAAAGTGTCAGAATTTACTCCCGGCG
CTCAGGCAGGCCTACGATGACGTCCTGGTGCAGCAAAGGGTTGATGTGCT
CCTCCTCCCCACCTTACCCATCAAGCCCCAACGTTTACCCAAGGCTGGAA
TGACGCCCGCCGAGGGCATCACGCATGCCTGGGCCGCACTCCAGAACATT
GCGGCGTTTGATCTAACCGGCCACCCGGCCTTGAGCGTTAATGCTGGGGT
TTCTTCCCCCGCTTCGTCGTCCTCCGGAAGGGCGGGCAAGAAGGGGAATG
GGGGGTTGCCGATTGGCGTGCAAGTGGTTGGAAGACGATGGGAGGATGCC
ACTGTACTGAATGTGGGGCGGGCTATTGAATTGGGGTCAGGACTCAAGCC
CTTGCAGTCAGGGGGAGGGTGA
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Synonyms
Publications