NO01G02880.1, NO01G02880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02880.1
Unique NameNO01G02880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2130
Alignment locationchr1:748111..750573 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:748111..750573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02880.1 vs.
Match: EWM29158.1 (Transcription factor 25 [Nannochloropsis gaditana])

HSP 1 Score: 475.3 bits (1222), Expect = 3.300e-130
Identity = 285/542 (52.58%), Postives = 357/542 (65.87%), Query Frame = 0 
Query:    1 MSARHLQALRAPGLGSQAAKDQELEEEESSEEEEVAARGGFHLLLDSSDEEEKEQEDVDAQVWEDGGADDKEEGQEGR-KPELQPV--LARKAKK--VAVVEDDEEAWLEIQRQAVGGGEGGDMTARSSPIIQNPVSTSADALDIDIKSLSLDKELKLRFGDEGVGDGGGGGGGGG-GRASRRRGGALGRGSTSMG--GSVLGQLYQRRCFFGAPKEDWPRPPTYVGGGIRMVRLEAPAEYENE--EEANASWYGFEWSPAFQALQQDYELVQETCDPNALAVFLAHHPHHAEGLLTLALIYATHGQMDRSHDYVRRCLFIYEAAYIESFRAAFTYSLGTATGAASGGP-----GTINCRMDVRRPENRPFFMALFRHVQMLGGRGLYQTAFEVAKFLLALDPRGDPTGIWLCLDYYALRAGKRQQLLAMQEAGFPIGRGWKEPRDDVEEWQDGSDKRAGSDADEELD-GMSDSAGFSDWTVSALPNVCFSCALALFWSNLVEDRAKAKTALREALLRFPVLLKPLIEKSRNELGSRITQPW 527
            MSARHL+ALR   LG   A D E+ E+  S       RGGF +L+ SSDEE+   + ++A     G  +D+   + GR   EL+PV  L  KAK+   +  EDDE+ W +I+  A G     D   R + +      +   AL ID K+L+LD+EL  RFG EG+ +GGGGGGGGG G  SR R        T+ G  G  L ++YQRRCFFG PKEDW RPPT+VGGG+R+ R+ AP + E    EEA A W+ FEWSPA QALQ DY  VQETC+PNALA+FLA HPH+AEGLLTLAL+ A HGQMDR+HD+VRRCLFI+E AY+ESFRA F           SG P     G ++CRMDVRR ENR FFMAL+RHVQMLGGRGLYQTAFEV KF+LALDPRGDPTGI LC+D+YA++AGK +QLL M++AGF IGRG      +  E +    + A  D  E     +++     DWT+  LPN+CFSC+LA   S   E++ K+K  L+EAL RFP++L+PL+EK RNELGSR+ Q W
Sbjct:    1 MSARHLKALRISNLGLADAVDAEVAEDADSPVG--GCRGGFDVLIGSSDEED---DSIEA-----GKGNDENIDEVGRFSHELRPVALLKPKAKRNDASKEEDDEDKWWQIETCARGAER--DEKERVNVLSDKTECSGLRALVIDRKALNLDRELMFRFGQEGLVEGGGGGGGGGPGNRSRAR--------TNFGHSGGTLSRMYQRRCFFGGPKEDWQRPPTFVGGGLRLSRVRAPVDCETSSGEEARA-WFAFEWSPALQALQHDYRRVQETCNPNALAIFLAQHPHYAEGLLTLALVLAAHGQMDRAHDHVRRCLFIHETAYVESFRALF-----------SGRPEDVLVGDVDCRMDVRRLENRLFFMALYRHVQMLGGRGLYQTAFEVGKFILALDPRGDPTGILLCIDFYAVKAGKAEQLLGMRDAGFTIGRGLAGSGSEEVEQERAKTEDAKLDGGEHQGYHLAEGTCGGDWTILDLPNICFSCSLAQKLSAKAEEQLKSKDDLQEALRRFPLVLRPLVEKCRNELGSRVKQEW 510
The following BLAST results are available for this feature:
BLAST of NO01G02880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29158.13.300e-13052.58Transcription factor 25 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02880NO01G02880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02880.1NO01G02880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02880.1.cds1NO01G02880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02880.1.cds2NO01G02880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02880.1.cds3NO01G02880.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02880.1 ID=NO01G02880.1|Name=NO01G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2130bp
ATGAGCGCGCGGCATCTTCAAGCGTTAAGAGCGCCAGGGCTGGGCTCACA
GGCTGCGAAGGACCAAGAGCTGGAGGAGGAGGAATCATCAGAGGAGGAGG
AGGTCGCAGCTCGCGGCGGGTTCCATTTGCTGCTCGATAGTAGCGACGAG
GAGGAGAAGGAGCAGGAGGATGTGGACGCGCAGGTATGGGAAGATGGTGG
AGCGGACGACAAAGAGGAAGGGCAGGAGGGGAGGAAGCCGGAGCTGCAGC
CCGTGCTTGCACGAAAGGCTAAGAAAGTAGCTGTGGTGGAAGACGACGAG
GAAGCCTGGCTGGAAATACAGAGACAGGCAGTGGGAGGAGGAGAGGGAGG
AGATATGACAGCAAGGAGCAGCCCCATTATTCAAAATCCTGTGAGTACAT
CGGCTGATGCCCTGGACATTGATATCAAGTCCCTCAGTTTGGACAAGGAG
CTCAAATTGCGCTTCGGGGACGAAGGCGTTGGAGACGGAGGCGGCGGCGG
AGGAGGAGGTGGTGGAAGAGCCAGTCGACGGCGCGGCGGTGCGCTTGGAC
GTGGAAGTACTAGTATGGGTGGAAGCGTTTTGGGCCAGCTGTATCAGCGG
CGTTGCTTTTTTGGCGCACCGAAGGAAGACTGGCCCAGACCTCCGACTTA
TGTGGGAGGGGGCATTCGGATGGTTCGGTTGGAGGCACCGGCGGAATACG
AGAACGAGGAAGAGGCTAATGCTTCCTGGTATGGCTTTGAATGGTCCCCG
GCGTTTCAGGCACTGCAGCAAGATTATGAGCTCGTCCAAGAAACCTGCGA
CCCTAACGCGCTTGCCGTCTTTTTGGCGCATCACCCTCACCATGCGGAGG
GCCTTCTCACGCTTGCATTGATCTATGCCACACATGGACAAATGGATCGA
TCTCACGACTATGTGCGACGCTGCCTTTTTATTTATGAGGCCGCTTATAT
TGAATCCTTTCGCGCCGCTTTCACCTATTCTCTCGGCACCGCCACTGGAG
CTGCGAGTGGAGGACCCGGGACGATTAACTGCAGGATGGACGTTCGGCGA
CCGGAGAATCGCCCCTTCTTCATGGCGCTCTTTCGGCACGTGCAGATGCT
TGGAGGGCGCGGACTGTATCAGACCGCCTTCGAAGTGGCCAAGTTTCTGC
TCGCACTCGATCCCAGGGGAGATCCAACGGGCATCTGGTTGTGCCTGGAC
TACTATGCGCTTCGAGCAGGCAAAAGACAGCAGTTGTTGGCTATGCAAGA
AGCGGGTTTCCCCATCGGTCGGGGATGGAAGGAGCCTAGAGATGATGTTG
AGGAGTGGCAAGATGGGAGCGACAAGAGAGCAGGCAGTGATGCCGACGAG
GAGCTCGACGGCATGTCTGACTCTGCCGGTTTCTCAGACTGGACGGTGTC
GGCCTTGCCTAATGTGTGCTTCTCTTGCGCGCTGGCTCTCTTTTGGAGCA
ACTTGGTCGAGGATCGGGCTAAAGCCAAGACTGCGCTACGCGAAGCTCTC
CTGCGTTTTCCTGTCCTGCTCAAGCCCCTGATTGAGAAGAGTCGAAACGA
GTTGGGCTCCCGCATCACCCAGCCATGGGACGGCGTCTTGCGACACCCCT
TCTTTGCCAATGCGGAGGCGCGTTTGCCGCTGGAATGCGTGCTTTTGCGC
TTGGTGGCTGTCTACGTGCAACGAAGCTATGATCTTTGGGCCGGCGACTC
GGAGGCTATGCAATTTTTGTTCGATGGAGCCTGGGCCGTGCTGATTGAGT
TTGAGCGGGAGCCAGGAGCGCACAAGCTGGAGGAGGAAGAGGTGTCTCGG
CACTACGGCTACGGTCACAATCCTTTGGACAAGTATCGCGGAGTCGCCGT
CGCGGACTATGGTGACGAGTGGCCTCGATTACCTGCCGACCTCAACCCTC
TCGACCCGGCCTTGGCGGATCCAGCTGTTGCCAGGCGTGGCCGATTGCGT
CTTCGCCGAGGAGGGGGAAGAGGGTTGGGCGGTTTCCAGCATCCTCAGCA
GCAATTGTGGGGCGACGGCGATGGCATGGGGCGAGGGCGCAACTATCTTG
ATCCAAATCTGCCTCTGGCGGAGTTGTTTTGGCGGAGCCTTTTGCCGTGG
AACACCATTAGGAGCAGTGGGTATGGATGA
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protein sequence of NO01G02880.1

>NO01G02880.1-protein ID=NO01G02880.1-protein|Name=NO01G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=710bp
MSARHLQALRAPGLGSQAAKDQELEEEESSEEEEVAARGGFHLLLDSSDE
EEKEQEDVDAQVWEDGGADDKEEGQEGRKPELQPVLARKAKKVAVVEDDE
EAWLEIQRQAVGGGEGGDMTARSSPIIQNPVSTSADALDIDIKSLSLDKE
LKLRFGDEGVGDGGGGGGGGGGRASRRRGGALGRGSTSMGGSVLGQLYQR
RCFFGAPKEDWPRPPTYVGGGIRMVRLEAPAEYENEEEANASWYGFEWSP
AFQALQQDYELVQETCDPNALAVFLAHHPHHAEGLLTLALIYATHGQMDR
SHDYVRRCLFIYEAAYIESFRAAFTYSLGTATGAASGGPGTINCRMDVRR
PENRPFFMALFRHVQMLGGRGLYQTAFEVAKFLLALDPRGDPTGIWLCLD
YYALRAGKRQQLLAMQEAGFPIGRGWKEPRDDVEEWQDGSDKRAGSDADE
ELDGMSDSAGFSDWTVSALPNVCFSCALALFWSNLVEDRAKAKTALREAL
LRFPVLLKPLIEKSRNELGSRITQPWDGVLRHPFFANAEARLPLECVLLR
LVAVYVQRSYDLWAGDSEAMQFLFDGAWAVLIEFEREPGAHKLEEEEVSR
HYGYGHNPLDKYRGVAVADYGDEWPRLPADLNPLDPALADPAVARRGRLR
LRRGGGRGLGGFQHPQQQLWGDGDGMGRGRNYLDPNLPLAELFWRSLLPW
NTIRSSGYG*
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mRNA from alignment at chr1:748111..750573+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02880.1 ID=NO01G02880.1|Name=NO01G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2463bp|location=Sequence derived from alignment at chr1:748111..750573+ (Nannochloropsis oceanica)
ATGAGCGCGCGGCATCTTCAAGCGTTAAGAGCGCCAGGGCTGGGCTCACA
GGCTGCGAAGGACCAAGAGCTGGAGGAGGAGGAATCATCAGAGGAGGAGG
AGGTCGCAGCTCGCGGCGGGTTCCATTTGCTGCTCGATAGTAGCGACGAG
GAGGAGAAGGAGCAGGAGGATGTGGACGCGCAGGTATGGGAAGATGGTGG
AGCGGACGACAAAGAGGAAGGGCAGGAGGGGAGGAAGCCGGAGCTGCAGC
CCGTGCTTGCACGAAAGGCTAAGAAAGTAGCTGTGGTGGAAGACGACGAG
GAAGCCTGGCTGGAAATACAGAGACAGGCAGTGGGAGGAGGAGAGGGAGG
AGATATGACAGCAAGGAGCAGCCCCATTATTCAAAATCCTGTGAGTACAT
CGGCTGATGCCCTGGACATTGATATCAAGTCCCTCAGTTTGGACAAGGAG
CTCAAATTGCGCTTCGGGGACGAAGGCGTTGGAGACGGAGGCGGCGGCGG
AGGAGGAGGTGGTGGAAGAGCCAGTCGACGGCGCGGCGGTGCGCTTGGAC
GTGGAAGTACTAGTATGGGTGGAAGCGTTTTGGGCCAGCTGTATCAGCGG
CGTTGCTTTTTTGGCGCACCGAAGGAAGACTGGCCCAGACCTCCGACTTA
TGTGGGAGGGGGCATTCGGATGGTTCGGTTGGAGGCACCGGCGGAATACG
AGAACGAGGAAGAGGCTAATGCTTCCTGGTATGGCTTTGAATGGTCCCCG
GCGTTTCAGGCACTGCAGCAAGATTATGAGCTCGTCCAAGAAACCTGCGA
CCCTAACGCGCTTGCCGTCTTTTTGGCGCATCACCCTCACCATGCGGAGG
GCCTTCTCACGCTTGCATTGATCTATGCCACACATGGTACGTGAGATTGA
TGTCGGATCGGTCCATAAATTCATCTAGAGGATCACACCTTAGCATTTGT
CTTCGCAGGGGCATAAGTCGCCTGACCAGATTGCTCACGCCACTCTTCTT
TACCACATCCTTCCACACACGTATTCCGCTCTTTACTCCCAACAGGACAA
ATGGATCGATCTCACGACTATGTGCGACGCTGCCTTTTTATTTATGAGGC
CGCTTATATTGAATCCTTTCGCGCCGCTTTCACCTATTCTCTCGGCACCG
CCACTGGAGCTGCGAGTGGAGGACCCGGGACGATTAACTGCAGGATGGAC
GTTCGGCGACCGGAGAATCGCCCCTTCTTCATGGCGCTCTTTCGGCACGT
GCAGATGCTTGGAGGGCGCGGACTGTATCAGACCGCCTTCGAAGTGGCCA
AGTTTCTGCTCGCACTCGATCCCAGGGGAGATCCAACGGGCATCTGGTTG
TGCCTGGACTACTATGCGCTTCGAGCAGGCAAAAGACAGCAGTTGTTGGC
TATGCAAGAAGCGGGTTTCCCCATCGGTCGGGGATGGAAGGAGCCTAGAG
ATGATGTTGAGGAGTGGCAAGATGGGAGCGACAAGAGAGCAGGCAGTGAT
GCCGACGAGGAGCTCGACGGCATGTCTGACTCTGCCGGTTTCTCAGACTG
GACGGTGTCGGCCTTGCCTAATGTGTGCTTCTCTTGCGCGCTGGCTCTCT
TTTGGAGCAACTTGGTCGAGGATCGGGCTAAAGCCAAGACTGCGCTACGC
GAAGCTCTCCTGCGTTTTCCTGTCCTGCTCAAGCCCCTGATTGAGAAGAG
TCGAAACGAGTTGGGCTCCCGCATCACCCAGCCATGGTGAGTAATTTAAT
GCTTGTTGGACAGAGAAGAGCGGCAACAATTACAGACAGAGAAGAGCGAC
AAAAATTATAACTTGTTTGTTTAAATTTAAATCCAAAATTTATTTCCTCA
CGTATTCTTCTTGCACACATTTGCCTCGTTGTACCTTTACCACACATGAC
GAATATACAGGGACGGCGTCTTGCGACACCCCTTCTTTGCCAATGCGGAG
GCGCGTTTGCCGCTGGAATGCGTGCTTTTGCGCTTGGTGGCTGTCTACGT
GCAACGAAGCTATGATCTTTGGGCCGGCGACTCGGAGGCTATGCAATTTT
TGTTCGATGGAGCCTGGGCCGTGCTGATTGAGTTTGAGCGGGAGCCAGGA
GCGCACAAGCTGGAGGAGGAAGAGGTGTCTCGGCACTACGGCTACGGTCA
CAATCCTTTGGACAAGTATCGCGGAGTCGCCGTCGCGGACTATGGTGACG
AGTGGCCTCGATTACCTGCCGACCTCAACCCTCTCGACCCGGCCTTGGCG
GATCCAGCTGTTGCCAGGCGTGGCCGATTGCGTCTTCGCCGAGGAGGGGG
AAGAGGGTTGGGCGGTTTCCAGCATCCTCAGCAGCAATTGTGGGGCGACG
GCGATGGCATGGGGCGAGGGCGCAACTATCTTGATCCAAATCTGCCTCTG
GCGGAGTTGTTTTGGCGGAGCCTTTTGCCGTGGAACACCATTAGGAGCAG
TGGGTATGGATGA
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Coding sequence (CDS) from alignment at chr1:748111..750573+

>NO01G02880.1 ID=NO01G02880.1|Name=NO01G02880.1|organism=Nannochloropsis oceanica|type=CDS|length=2130bp|location=Sequence derived from alignment at chr1:748111..750573+ (Nannochloropsis oceanica)
ATGAGCGCGCGGCATCTTCAAGCGTTAAGAGCGCCAGGGCTGGGCTCACA
GGCTGCGAAGGACCAAGAGCTGGAGGAGGAGGAATCATCAGAGGAGGAGG
AGGTCGCAGCTCGCGGCGGGTTCCATTTGCTGCTCGATAGTAGCGACGAG
GAGGAGAAGGAGCAGGAGGATGTGGACGCGCAGGTATGGGAAGATGGTGG
AGCGGACGACAAAGAGGAAGGGCAGGAGGGGAGGAAGCCGGAGCTGCAGC
CCGTGCTTGCACGAAAGGCTAAGAAAGTAGCTGTGGTGGAAGACGACGAG
GAAGCCTGGCTGGAAATACAGAGACAGGCAGTGGGAGGAGGAGAGGGAGG
AGATATGACAGCAAGGAGCAGCCCCATTATTCAAAATCCTGTGAGTACAT
CGGCTGATGCCCTGGACATTGATATCAAGTCCCTCAGTTTGGACAAGGAG
CTCAAATTGCGCTTCGGGGACGAAGGCGTTGGAGACGGAGGCGGCGGCGG
AGGAGGAGGTGGTGGAAGAGCCAGTCGACGGCGCGGCGGTGCGCTTGGAC
GTGGAAGTACTAGTATGGGTGGAAGCGTTTTGGGCCAGCTGTATCAGCGG
CGTTGCTTTTTTGGCGCACCGAAGGAAGACTGGCCCAGACCTCCGACTTA
TGTGGGAGGGGGCATTCGGATGGTTCGGTTGGAGGCACCGGCGGAATACG
AGAACGAGGAAGAGGCTAATGCTTCCTGGTATGGCTTTGAATGGTCCCCG
GCGTTTCAGGCACTGCAGCAAGATTATGAGCTCGTCCAAGAAACCTGCGA
CCCTAACGCGCTTGCCGTCTTTTTGGCGCATCACCCTCACCATGCGGAGG
GCCTTCTCACGCTTGCATTGATCTATGCCACACATGGACAAATGGATCGA
TCTCACGACTATGTGCGACGCTGCCTTTTTATTTATGAGGCCGCTTATAT
TGAATCCTTTCGCGCCGCTTTCACCTATTCTCTCGGCACCGCCACTGGAG
CTGCGAGTGGAGGACCCGGGACGATTAACTGCAGGATGGACGTTCGGCGA
CCGGAGAATCGCCCCTTCTTCATGGCGCTCTTTCGGCACGTGCAGATGCT
TGGAGGGCGCGGACTGTATCAGACCGCCTTCGAAGTGGCCAAGTTTCTGC
TCGCACTCGATCCCAGGGGAGATCCAACGGGCATCTGGTTGTGCCTGGAC
TACTATGCGCTTCGAGCAGGCAAAAGACAGCAGTTGTTGGCTATGCAAGA
AGCGGGTTTCCCCATCGGTCGGGGATGGAAGGAGCCTAGAGATGATGTTG
AGGAGTGGCAAGATGGGAGCGACAAGAGAGCAGGCAGTGATGCCGACGAG
GAGCTCGACGGCATGTCTGACTCTGCCGGTTTCTCAGACTGGACGGTGTC
GGCCTTGCCTAATGTGTGCTTCTCTTGCGCGCTGGCTCTCTTTTGGAGCA
ACTTGGTCGAGGATCGGGCTAAAGCCAAGACTGCGCTACGCGAAGCTCTC
CTGCGTTTTCCTGTCCTGCTCAAGCCCCTGATTGAGAAGAGTCGAAACGA
GTTGGGCTCCCGCATCACCCAGCCATGGGACGGCGTCTTGCGACACCCCT
TCTTTGCCAATGCGGAGGCGCGTTTGCCGCTGGAATGCGTGCTTTTGCGC
TTGGTGGCTGTCTACGTGCAACGAAGCTATGATCTTTGGGCCGGCGACTC
GGAGGCTATGCAATTTTTGTTCGATGGAGCCTGGGCCGTGCTGATTGAGT
TTGAGCGGGAGCCAGGAGCGCACAAGCTGGAGGAGGAAGAGGTGTCTCGG
CACTACGGCTACGGTCACAATCCTTTGGACAAGTATCGCGGAGTCGCCGT
CGCGGACTATGGTGACGAGTGGCCTCGATTACCTGCCGACCTCAACCCTC
TCGACCCGGCCTTGGCGGATCCAGCTGTTGCCAGGCGTGGCCGATTGCGT
CTTCGCCGAGGAGGGGGAAGAGGGTTGGGCGGTTTCCAGCATCCTCAGCA
GCAATTGTGGGGCGACGGCGATGGCATGGGGCGAGGGCGCAACTATCTTG
ATCCAAATCTGCCTCTGGCGGAGTTGTTTTGGCGGAGCCTTTTGCCGTGG
AACACCATTAGGAGCAGTGGGTATGGATGA
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Synonyms
Publications