NO01G02860.1, NO01G02860.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G02860.1
Unique Name	NO01G02860.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2016
Alignment location	chr1:740011..742372 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:740011..742372 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO01G02860.1 vs.
Match: EWM29130.1 (tubulin gamma-1 chain [Nannochloropsis gaditana])

HSP 1 Score: 892.5 bits (2305), Expect = 6.600e-256
Identity = 452/472 (95.76%), Postives = 456/472 (96.61%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWGHQGGIGSSAAGGLPVSAVERQQQPQQ 526
            MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYR LYNQENVFMASNGGGAGNNWASGHRQAEE+HDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQ SAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDP+QVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAE PDYI+W H G IG +A   LP SA E Q Q  Q
Sbjct:    1 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRSLYNQENVFMASNGGGAGNNWASGHRQAEEHHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQASAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPSQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAERPDYITWAHGGDIGYAA--NLPSSASEPQSQSFQ 470

The following BLAST results are available for this feature:

BLAST of NO01G02860.1 vs.

BLAST of NO01G02860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29130.1	6.600e-256	95.76	tubulin gamma-1 chain [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G02860	NO01G02860	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G02860.1	NO01G02860.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G02860.1.cds1	NO01G02860.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G02860.1.cds2	NO01G02860.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G02860.1.cds3	NO01G02860.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:740011..742372-
coding sequence from alignment at chr1:740011..742372-

mRNA sequence

>NO01G02860.1 ID=NO01G02860.1|Name=NO01G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp
ATTTTTTTCTTCACTTCTGATCAAGCTCACATACCACACGATATTTTCTG
CCAAGGCACTGTAGAGTGTCAGAGGGGGCTACGATACATGGCGCAATTCG
GAGCTAGGTGTAGGAAGCAGAATGTTTCGGCCTTCCCCTGTGCTGCTTCC
CCCACCACCAGTGCATGCTTCCACCTCCCTCACATCCACTTCGTCTGTGA
CTTTCCTCCACGCACAAACACAGGACCACATCCAGCCAGAGAAGCCATGC
CGCACGAAATCATCACGCTGCAGGTGGGCCAGTGCGGCAATCAGATCGGC
AGCGAGTTTTGGAAGCAAATCTGTGCGGAGCACGGCATCAGTCCCGATGG
CATGCTTCAGGACTTCGCCACGGAGGGGAACGACCGCAAGGACGTCTTCT
TCTATCAGGCGGACGATGATCACTACATTCCCCGGGCCTTATTGATGGAC
TTAGAGCCGCGTGTCATAAATTCGATTCTGAATTCGGAGTACCGCGGCTT
GTACAACCAGGAGAATGTCTTCATGGCTAGCAATGGTGGCGGGGCGGGTA
ACAATTGGGCGTCAGGCCATCGGCAGGCGGAGGAGTACCACGATCAGCTC
ATGGAGATGATCGATCGGGAGGCGGATGGCAGTGACAGCCTGGAGGGGTT
TGTTCTTTGTCACTCTATAGCTGGTGGCACGGGCTCAGGGATGGGCTCCT
ACCTGCTCGAGCGACTCAACGATCACTTCCCCAAAAAGCTCATTCAGACC
TACTCCGTCTTCCCCAATTGGGATCAAACCCAAAGTGATGTGGTGGTGCA
GCCATATAATTCCCTCCTTACGCTCAAGCGCCTAACCTTGAACGCGGATT
GCGTGGTGGTCCTGGATAACACGGCCCTCAATCGCATTGCTGTGGACCGC
CTGCGCATCACCAATCCTACTGTCAATCAACTCAATTCCCTCGTTTCTAC
GGTCATGGCTGCCTCCACCACCACCCTACGTTACCCCGGGTACATGAACA
ATGACCTTATCGGGCTGGTCGCATCCCTCATCCCCACCCCTCGCTGCCAT
TTCCTCATGACGGGGTATACGCCCCTTGTGATCTCCGACGTGCAAACCTC
CGCTGTGAGGAAAACAACCGTCTTGGACGTCATGCGTCGCCTGACCCAAA
CAAAAAATATCATGGTGTCTGCTTCTACGCGCACGGGGTGTTATATTTCC
ATTTTGAATATCATTCAGGGAGACGTCGATCCGACCCAAGTTCACAAGGC
TTTGCAGCGAATCCGCGAGAGGAAATTAGTAAATTTTATCCCGTGGGGCC
CGGCGTCGATTCAGGTGGCTTTGTCAAGGAAAAGTGCATATGTTGAGACA
GCGCACAAAGTCTCGGGATTAATGTTGGCGAATCATACATGTATGGCTAG
CTTGTTCCAGCGGTCGGTAAATCAATATGATAAGATTAGGAAGAGGAATG
CCTTCGTCGAGAATTATCGAAAAGAGCCCATGTTTCAGGATTCCCTGGAT
GAGTTTGATTCGTCTCGGGAAGTGGTACAGGGATTGATTGATGAGTACAA
AGCAGCTGAAGGGCCCGATTATATCTCTTGGGGCCACCAGGGAGGGATAG
GGAGTAGCGCGGCGGGGGGGTTGCCTGTGTCGGCGGTGGAGCGGCAGCAG
CAGCCACAGCAGCAGCTACAACAACAACAGCCGCTGCAGGTGCCATCATC
TGGATTCCAGCATCCGCACCAGCCGCACTAATGATGATGGAGAGAGAAAG
AAGGGAGATGGAAGGGAGGAAGGGATTGATGTTGTACAGTTTCCTGTGGA
CCGAGTGATGCATGTGGAATGATAGATAAGATAAGATAAGAAGGAAGGAG
GGCAGCAGCTGAAGAAGGACAGGCAGAATAAGAGGGAGGAGAAAGGAGGC
TGACGCAAACGACAAAAAATGAGTAGAATCGCAACCACATATTAACATCA
ACGACGACGACAACAACACCCGAGAGAAAGAATAAAAGGACGAATGAACG
AATGAAGGGGGTGAAA

protein sequence of NO01G02860.1

>NO01G02860.1-protein ID=NO01G02860.1-protein|Name=NO01G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=548bp
MAQFGARCRKQNVSAFPCAASPTTSACFHLPHIHFVCDFPPRTNTGPHPA
REAMPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDR
KDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNG
GGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGS
GMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLT
LNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYP
GYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMR
RLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNF
IPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKI
RKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWGH
QGGIGSSAAGGLPVSAVERQQQPQQQLQQQQPLQVPSSGFQHPHQPH*

mRNA from alignment at chr1:740011..742372-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G02860.1 ID=NO01G02860.1|Name=NO01G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2362bp|location=Sequence derived from alignment at chr1:740011..742372- (Nannochloropsis oceanica)
ATTTTTTTCTTCACTTCTGATCAAGCTCACATACCACACGATATTTTCTG
CCAAGGCACTGTAGAGTGTCAGAGGGGGCTACGATACATGGCGCAATTCG
GAGCTAGGTGTAGGAAGCAGAATGTTTCGGCCTTCCCCTGTGCTGCTTCC
CCCACCACCAGTGCATGCTTCCACCTCCCTCACATCCACTTCGTCTGTGA
CTTTCCTCCACGCACAAACACAGGACCACATCCAGCCAGAGAAGCCATGC
CGCACGAAATCATCACGCTGCAGGTGGGCCAGTGCGGCAATCAGATCGGC
AGCGAGTTTTGGAAGCAAATCTGTGCGGAGCACGGCATCAGTCCCGATGG
CATGCTTCAGGACTTCGCCACGGAGGGGAACGACCGCAAGGACGTCTTCT
TCTATCAGGCGGACGATGATCACTACATTCCCCGGGCCTTATTGATGGAC
TTAGAGCCGCGTGTCATAAATTCGATTCTGAATTCGGAGTACCGCGGCTT
GTACAACCAGGAGAATGTCTTCATGGCTAGCAATGGTGGCGGGGCGGGTA
ACAATTGGGCGTCAGGCCATCGGCAGGCGGAGGAGTACCACGATCAGCTC
ATGGAGATGATCGATCGGGAGGCGGATGGCAGTGACAGCCTGGAGGGGTT
TGTTCTTTGTCACTCTATAGCTGGTGGCACGGGCTCAGGGATGGTGCGTA
CTGGGGAGGGTAGGAGAGGGATTATTTCCTTGTCTGCCGTGGAAGTAGTG
ACAAGATAGCTGTATGTTTCTTTCATCTATGCCACATAGGTCTTTATATT
CTACGCTTGAAACGCCTTTTCTCACATACCACTTCCCCCTTCCTTTCCTT
TTCTTTCCTTCCCTTCACCACCACCTATCCCGAAGGGCTCCTACCTGCTC
GAGCGACTCAACGATCACTTCCCCAAAAAGCTCATTCAGACCTACTCCGT
CTTCCCCAATTGGGATCAAACCCAAAGTGATGTGGTGGTGCAGCCATATA
ATTCCCTCCTTACGCTCAAGCGCCTAACCTTGAACGCGGATTGCGTGGTG
GTCCTGGATAACACGGCCCTCAATCGCATTGCTGTGGACCGCCTGCGCAT
CACCAATCCTACTGTCAATCAACTCAATTCCCTCGTTTCTACGGTACGTG
GATTAATTGCACGCTCGGTCTCCTTGTCGGCGGTCGTCTTGTCGACAGTC
TTCAAGGACTTGCCGTTTACGCTTGTGAACACATTTTATCCTTACTAATT
TCCGTCACTCCCTCCCTCCTTCTCTCCCTTCCTCTCTTCCTCCCTAGGTC
ATGGCTGCCTCCACCACCACCCTACGTTACCCCGGGTACATGAACAATGA
CCTTATCGGGCTGGTCGCATCCCTCATCCCCACCCCTCGCTGCCATTTCC
TCATGACGGGGTATACGCCCCTTGTGATCTCCGACGTGCAAACCTCCGCT
GTGAGGAAAACAACCGTCTTGGACGTCATGCGTCGCCTGACCCAAACAAA
AAATATCATGGTGTCTGCTTCTACGCGCACGGGGTGTTATATTTCCATTT
TGAATATCATTCAGGGAGACGTCGATCCGACCCAAGTTCACAAGGCTTTG
CAGCGAATCCGCGAGAGGAAATTAGTAAATTTTATCCCGTGGGGCCCGGC
GTCGATTCAGGTGGCTTTGTCAAGGAAAAGTGCATATGTTGAGACAGCGC
ACAAAGTCTCGGGATTAATGTTGGCGAATCATACATGTATGGCTAGCTTG
TTCCAGCGGTCGGTAAATCAATATGATAAGATTAGGAAGAGGAATGCCTT
CGTCGAGAATTATCGAAAAGAGCCCATGTTTCAGGATTCCCTGGATGAGT
TTGATTCGTCTCGGGAAGTGGTACAGGGATTGATTGATGAGTACAAAGCA
GCTGAAGGGCCCGATTATATCTCTTGGGGCCACCAGGGAGGGATAGGGAG
TAGCGCGGCGGGGGGGTTGCCTGTGTCGGCGGTGGAGCGGCAGCAGCAGC
CACAGCAGCAGCTACAACAACAACAGCCGCTGCAGGTGCCATCATCTGGA
TTCCAGCATCCGCACCAGCCGCACTAATGATGATGGAGAGAGAAAGAAGG
GAGATGGAAGGGAGGAAGGGATTGATGTTGTACAGTTTCCTGTGGACCGA
GTGATGCATGTGGAATGATAGATAAGATAAGATAAGAAGGAAGGAGGGCA
GCAGCTGAAGAAGGACAGGCAGAATAAGAGGGAGGAGAAAGGAGGCTGAC
GCAAACGACAAAAAATGAGTAGAATCGCAACCACATATTAACATCAACGA
CGACGACAACAACACCCGAGAGAAAGAATAAAAGGACGAATGAACGAATG
AAGGGGGTGAAA

Coding sequence (CDS) from alignment at chr1:740011..742372-

>NO01G02860.1 ID=NO01G02860.1|Name=NO01G02860.1|organism=Nannochloropsis oceanica|type=CDS|length=1644bp|location=Sequence derived from alignment at chr1:740011..742372- (Nannochloropsis oceanica)
ATGGCGCAATTCGGAGCTAGGTGTAGGAAGCAGAATGTTTCGGCCTTCCC
CTGTGCTGCTTCCCCCACCACCAGTGCATGCTTCCACCTCCCTCACATCC
ACTTCGTCTGTGACTTTCCTCCACGCACAAACACAGGACCACATCCAGCC
AGAGAAGCCATGCCGCACGAAATCATCACGCTGCAGGTGGGCCAGTGCGG
CAATCAGATCGGCAGCGAGTTTTGGAAGCAAATCTGTGCGGAGCACGGCA
TCAGTCCCGATGGCATGCTTCAGGACTTCGCCACGGAGGGGAACGACCGC
AAGGACGTCTTCTTCTATCAGGCGGACGATGATCACTACATTCCCCGGGC
CTTATTGATGGACTTAGAGCCGCGTGTCATAAATTCGATTCTGAATTCGG
AGTACCGCGGCTTGTACAACCAGGAGAATGTCTTCATGGCTAGCAATGGT
GGCGGGGCGGGTAACAATTGGGCGTCAGGCCATCGGCAGGCGGAGGAGTA
CCACGATCAGCTCATGGAGATGATCGATCGGGAGGCGGATGGCAGTGACA
GCCTGGAGGGGTTTGTTCTTTGTCACTCTATAGCTGGTGGCACGGGCTCA
GGGATGGGCTCCTACCTGCTCGAGCGACTCAACGATCACTTCCCCAAAAA
GCTCATTCAGACCTACTCCGTCTTCCCCAATTGGGATCAAACCCAAAGTG
ATGTGGTGGTGCAGCCATATAATTCCCTCCTTACGCTCAAGCGCCTAACC
TTGAACGCGGATTGCGTGGTGGTCCTGGATAACACGGCCCTCAATCGCAT
TGCTGTGGACCGCCTGCGCATCACCAATCCTACTGTCAATCAACTCAATT
CCCTCGTTTCTACGGTCATGGCTGCCTCCACCACCACCCTACGTTACCCC
GGGTACATGAACAATGACCTTATCGGGCTGGTCGCATCCCTCATCCCCAC
CCCTCGCTGCCATTTCCTCATGACGGGGTATACGCCCCTTGTGATCTCCG
ACGTGCAAACCTCCGCTGTGAGGAAAACAACCGTCTTGGACGTCATGCGT
CGCCTGACCCAAACAAAAAATATCATGGTGTCTGCTTCTACGCGCACGGG
GTGTTATATTTCCATTTTGAATATCATTCAGGGAGACGTCGATCCGACCC
AAGTTCACAAGGCTTTGCAGCGAATCCGCGAGAGGAAATTAGTAAATTTT
ATCCCGTGGGGCCCGGCGTCGATTCAGGTGGCTTTGTCAAGGAAAAGTGC
ATATGTTGAGACAGCGCACAAAGTCTCGGGATTAATGTTGGCGAATCATA
CATGTATGGCTAGCTTGTTCCAGCGGTCGGTAAATCAATATGATAAGATT
AGGAAGAGGAATGCCTTCGTCGAGAATTATCGAAAAGAGCCCATGTTTCA
GGATTCCCTGGATGAGTTTGATTCGTCTCGGGAAGTGGTACAGGGATTGA
TTGATGAGTACAAAGCAGCTGAAGGGCCCGATTATATCTCTTGGGGCCAC
CAGGGAGGGATAGGGAGTAGCGCGGCGGGGGGGTTGCCTGTGTCGGCGGT
GGAGCGGCAGCAGCAGCCACAGCAGCAGCTACAACAACAACAGCCGCTGC
AGGTGCCATCATCTGGATTCCAGCATCCGCACCAGCCGCACTAA

Synonyms

Publications