NO01G02650.1, NO01G02650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02650.1
Unique NameNO01G02650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1635
Alignment locationchr1:684878..686610 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:684878..686610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02650.1 vs.
Match: EWM29139.1 (macrophage erythroblast attacher [Nannochloropsis gaditana])

HSP 1 Score: 342.8 bits (878), Expect = 1.600e-90
Identity = 178/291 (61.17%), Postives = 211/291 (72.51%), Query Frame = 0 
Query:  167 VERQLVEKRDCMGALAWCADHASKLRRLNCPLEFQLHKQQFLELVRKGHRIQALEYASEHLDPT---ANSAAAAVGGAG----GATNTPGLSIEQLWEVQQAMATLALADPEACTVPEYQRLFAVERLRELGDSFAAAARRCYGMTQDYSTLEVCLQAGLTALKTPLCRVGAPGEIMAKAKEEDDGQEIGMVAEDEGHYNQDCPVCSPTGRALAVGLPLAHFGNSYLTCRCTGEAMDGGNPPMVLPNGRVYSQRAISENLLSVDGSGAVWVTCPRTGDSFAPSDVKNIFVI 451
            VE+QLVE RDC GALAWCADH+S+LRRL  PLEF+LHKQQFLE+VR+  R+ ALEYAS+H  P    +++ + A  G+G     A+   GLS EQL EVQQAMATLAL DPE C VP+Y +LFAVER +ELG  F+A ARRCYGMT  ++ LE C+QA LTALKTP CR    GE M+   E  +        E E +YN DCPVC+  GR+LAV LPL+H GNSYLTC CTGEAMD  NPPM+LPNGRVYSQRA+ E+L S DG G   VTCPRT DSF  S V+NI+V+
Sbjct:   10 VEQQLVEHRDCAGALAWCADHSSRLRRLGSPLEFKLHKQQFLEMVRQKDRLGALEYASQHFSPQNLQSSATSMAPRGSGIAFTNASANSGLSGEQLVEVQQAMATLALGDPEDCRVPDYSQLFAVERWQELGALFSAEARRCYGMTTKFTALEACIQAALTALKTPSCRRLERGEAMSGNAESQETYSCE-TTEQENNYNPDCPVCADPGRSLAVALPLSHCGNSYLTCACTGEAMDAANPPMLLPNGRVYSQRAVREHLTSSDGCGENRVTCPRTRDSFPLSKVRNIYVV 299
The following BLAST results are available for this feature:
BLAST of NO01G02650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29139.11.600e-9061.17macrophage erythroblast attacher [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02650NO01G02650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02650.1NO01G02650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02650.1.cds1NO01G02650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02650.1.cds2NO01G02650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02650.1 ID=NO01G02650.1|Name=NO01G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1635bp
ACAGCCCCACGCACAGTTTCCTTCGCGTCATAGGACACACATAATTGGCC
CGGCGGCGCAAAATTGATCGGCTTTCTTGGTTCTATTTACCCTGGAGAGC
ACCTCCATAATCAGCAGCCCAGACCATGTTTCATCTGGAATACACGCTTG
TCAGAATCTCCTGCGAAGCCCTTAGCTCCCACTTCCAGCGGGTCCGCAAG
CAGGTGATGCGCGAGCTTGGGCAGATTGTGACACTCCTCAAGAAACAGGA
CAATCCCGACTCCACGACAGATGCACTGCGGGTGCGGTTACTCCACCTGC
GAGAGGCTTTGGTGGCGGCGGACGCGCAGGAGAAGGACTTATTCGAGCGA
TGCCAACGGAAGCTCCAGACATTGGCAACTGCACAGAAAGACGAAGAGGC
TTCCCCTTCATTATCAATTGTCCCCCCACAATATCCTTCAAGACATGGAC
TGACGCTGAGAAGAAAATTACAGTTAGAGCGTTTGGTAGGCGAGTATTTA
CTGCGGCAGGGCTACCTTGAGAGCCTAAGCCTGCTGGAGAAAGAAGGGGC
CAGTACACAAGGAGCAGGAGCAGGAGGAGTAGGCAAGTTGTTCGACCTGG
ACATCTTCATTAAATGTCGCGCAGTGGAACGACAACTAGTCGAAAAGCGG
GATTGCATGGGTGCGTTGGCGTGGTGCGCGGACCACGCCTCCAAGTTACG
GCGATTGAATTGCCCCCTCGAATTTCAACTGCACAAGCAACAATTCTTGG
AGCTGGTGCGAAAGGGACACCGGATTCAGGCACTAGAATATGCGAGCGAG
CATCTTGATCCGACAGCCAACAGTGCTGCTGCTGCCGTTGGTGGTGCGGG
TGGAGCTACGAATACTCCCGGTCTGTCAATTGAGCAGCTTTGGGAGGTCC
AGCAGGCCATGGCCACCCTTGCGCTTGCCGACCCGGAGGCTTGTACCGTG
CCTGAGTATCAGCGGCTTTTCGCTGTGGAACGCTTGCGTGAATTGGGGGA
TTCGTTTGCGGCGGCGGCGCGGCGGTGTTATGGGATGACCCAGGACTATT
CCACGCTCGAGGTCTGCCTTCAAGCGGGCTTGACGGCCCTCAAGACCCCT
CTGTGTCGTGTTGGGGCTCCGGGAGAAATCATGGCTAAAGCGAAGGAGGA
AGACGATGGTCAAGAGATAGGGATGGTGGCGGAGGATGAAGGGCACTATA
ACCAAGACTGTCCTGTGTGCTCTCCAACCGGCCGCGCTCTGGCAGTGGGT
TTGCCGTTGGCGCATTTTGGGAATTCGTATTTGACGTGTCGGTGCACTGG
GGAAGCAATGGATGGAGGGAACCCGCCCATGGTATTGCCGAACGGCCGTG
TGTATTCTCAGCGGGCCATCAGTGAGAATTTATTGTCCGTCGATGGGTCA
GGGGCGGTGTGGGTGACTTGTCCTCGAACGGGCGATTCGTTTGCGCCATC
GGATGTGAAGAATATTTTCGTCATTTGAGCAATTCGTGGAGGGGGGGACA
GCGAAAGAAGCACGCAAAAATGTATAGAAGAGTTAGAAACGGGATCACAG
GGGATAAGAGTGAGGGGGATCACTCGGCAACTTTGTATCTGTCAGCTGTA
ATAACACGTGTGAGTCGATGACAAAAAGAAAAATA
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protein sequence of NO01G02650.1

>NO01G02650.1-protein ID=NO01G02650.1-protein|Name=NO01G02650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MFHLEYTLVRISCEALSSHFQRVRKQVMRELGQIVTLLKKQDNPDSTTDA
LRVRLLHLREALVAADAQEKDLFERCQRKLQTLATAQKDEEASPSLSIVP
PQYPSRHGLTLRRKLQLERLVGEYLLRQGYLESLSLLEKEGASTQGAGAG
GVGKLFDLDIFIKCRAVERQLVEKRDCMGALAWCADHASKLRRLNCPLEF
QLHKQQFLELVRKGHRIQALEYASEHLDPTANSAAAAVGGAGGATNTPGL
SIEQLWEVQQAMATLALADPEACTVPEYQRLFAVERLRELGDSFAAAARR
CYGMTQDYSTLEVCLQAGLTALKTPLCRVGAPGEIMAKAKEEDDGQEIGM
VAEDEGHYNQDCPVCSPTGRALAVGLPLAHFGNSYLTCRCTGEAMDGGNP
PMVLPNGRVYSQRAISENLLSVDGSGAVWVTCPRTGDSFAPSDVKNIFVI
*
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mRNA from alignment at chr1:684878..686610-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02650.1 ID=NO01G02650.1|Name=NO01G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1733bp|location=Sequence derived from alignment at chr1:684878..686610- (Nannochloropsis oceanica)
ACAGCCCCACGCACAGTTTCCTTCGCGTCATAGGACACACATAATTGGCC
CGGCGGCGCAAAATTGATCGGCTTTCTTGGTTCTATTTACCCTGGAGAGC
ACCTCCATAATCAGCAGCCCAGACCATGTTTCATCTGGAATACACGCTTG
TCAGAATCTCCTGCGAAGCCCTTAGCTCCCACTTCCAGCGGGTCCGCAAG
CAGGTATCAATTGAGATGGCTGATTTATTTGTAAAAGGCGGGATGCCGTT
GCCCGTCCTCCGTCCAACGAAAGATCCTCATCCCCATACAACCCACCCTA
GGTGATGCGCGAGCTTGGGCAGATTGTGACACTCCTCAAGAAACAGGACA
ATCCCGACTCCACGACAGATGCACTGCGGGTGCGGTTACTCCACCTGCGA
GAGGCTTTGGTGGCGGCGGACGCGCAGGAGAAGGACTTATTCGAGCGATG
CCAACGGAAGCTCCAGACATTGGCAACTGCACAGAAAGACGAAGAGGCTT
CCCCTTCATTATCAATTGTCCCCCCACAATATCCTTCAAGACATGGACTG
ACGCTGAGAAGAAAATTACAGTTAGAGCGTTTGGTAGGCGAGTATTTACT
GCGGCAGGGCTACCTTGAGAGCCTAAGCCTGCTGGAGAAAGAAGGGGCCA
GTACACAAGGAGCAGGAGCAGGAGGAGTAGGCAAGTTGTTCGACCTGGAC
ATCTTCATTAAATGTCGCGCAGTGGAACGACAACTAGTCGAAAAGCGGGA
TTGCATGGGTGCGTTGGCGTGGTGCGCGGACCACGCCTCCAAGTTACGGC
GATTGAATTGCCCCCTCGAATTTCAACTGCACAAGCAACAATTCTTGGAG
CTGGTGCGAAAGGGACACCGGATTCAGGCACTAGAATATGCGAGCGAGCA
TCTTGATCCGACAGCCAACAGTGCTGCTGCTGCCGTTGGTGGTGCGGGTG
GAGCTACGAATACTCCCGGTCTGTCAATTGAGCAGCTTTGGGAGGTCCAG
CAGGCCATGGCCACCCTTGCGCTTGCCGACCCGGAGGCTTGTACCGTGCC
TGAGTATCAGCGGCTTTTCGCTGTGGAACGCTTGCGTGAATTGGGGGATT
CGTTTGCGGCGGCGGCGCGGCGGTGTTATGGGATGACCCAGGACTATTCC
ACGCTCGAGGTCTGCCTTCAAGCGGGCTTGACGGCCCTCAAGACCCCTCT
GTGTCGTGTTGGGGCTCCGGGAGAAATCATGGCTAAAGCGAAGGAGGAAG
ACGATGGTCAAGAGATAGGGATGGTGGCGGAGGATGAAGGGCACTATAAC
CAAGACTGTCCTGTGTGCTCTCCAACCGGCCGCGCTCTGGCAGTGGGTTT
GCCGTTGGCGCATTTTGGGAATTCGTATTTGACGTGTCGGTGCACTGGGG
AAGCAATGGATGGAGGGAACCCGCCCATGGTATTGCCGAACGGCCGTGTG
TATTCTCAGCGGGCCATCAGTGAGAATTTATTGTCCGTCGATGGGTCAGG
GGCGGTGTGGGTGACTTGTCCTCGAACGGGCGATTCGTTTGCGCCATCGG
ATGTGAAGAATATTTTCGTCATTTGAGCAATTCGTGGAGGGGGGGACAGC
GAAAGAAGCACGCAAAAATGTATAGAAGAGTTAGAAACGGGATCACAGGG
GATAAGAGTGAGGGGGATCACTCGGCAACTTTGTATCTGTCAGCTGTAAT
AACACGTGTGAGTCGATGACAAAAAGAAAAATA
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Coding sequence (CDS) from alignment at chr1:684878..686610-

>NO01G02650.1 ID=NO01G02650.1|Name=NO01G02650.1|organism=Nannochloropsis oceanica|type=CDS|length=1353bp|location=Sequence derived from alignment at chr1:684878..686610- (Nannochloropsis oceanica)
ATGTTTCATCTGGAATACACGCTTGTCAGAATCTCCTGCGAAGCCCTTAG
CTCCCACTTCCAGCGGGTCCGCAAGCAGGTGATGCGCGAGCTTGGGCAGA
TTGTGACACTCCTCAAGAAACAGGACAATCCCGACTCCACGACAGATGCA
CTGCGGGTGCGGTTACTCCACCTGCGAGAGGCTTTGGTGGCGGCGGACGC
GCAGGAGAAGGACTTATTCGAGCGATGCCAACGGAAGCTCCAGACATTGG
CAACTGCACAGAAAGACGAAGAGGCTTCCCCTTCATTATCAATTGTCCCC
CCACAATATCCTTCAAGACATGGACTGACGCTGAGAAGAAAATTACAGTT
AGAGCGTTTGGTAGGCGAGTATTTACTGCGGCAGGGCTACCTTGAGAGCC
TAAGCCTGCTGGAGAAAGAAGGGGCCAGTACACAAGGAGCAGGAGCAGGA
GGAGTAGGCAAGTTGTTCGACCTGGACATCTTCATTAAATGTCGCGCAGT
GGAACGACAACTAGTCGAAAAGCGGGATTGCATGGGTGCGTTGGCGTGGT
GCGCGGACCACGCCTCCAAGTTACGGCGATTGAATTGCCCCCTCGAATTT
CAACTGCACAAGCAACAATTCTTGGAGCTGGTGCGAAAGGGACACCGGAT
TCAGGCACTAGAATATGCGAGCGAGCATCTTGATCCGACAGCCAACAGTG
CTGCTGCTGCCGTTGGTGGTGCGGGTGGAGCTACGAATACTCCCGGTCTG
TCAATTGAGCAGCTTTGGGAGGTCCAGCAGGCCATGGCCACCCTTGCGCT
TGCCGACCCGGAGGCTTGTACCGTGCCTGAGTATCAGCGGCTTTTCGCTG
TGGAACGCTTGCGTGAATTGGGGGATTCGTTTGCGGCGGCGGCGCGGCGG
TGTTATGGGATGACCCAGGACTATTCCACGCTCGAGGTCTGCCTTCAAGC
GGGCTTGACGGCCCTCAAGACCCCTCTGTGTCGTGTTGGGGCTCCGGGAG
AAATCATGGCTAAAGCGAAGGAGGAAGACGATGGTCAAGAGATAGGGATG
GTGGCGGAGGATGAAGGGCACTATAACCAAGACTGTCCTGTGTGCTCTCC
AACCGGCCGCGCTCTGGCAGTGGGTTTGCCGTTGGCGCATTTTGGGAATT
CGTATTTGACGTGTCGGTGCACTGGGGAAGCAATGGATGGAGGGAACCCG
CCCATGGTATTGCCGAACGGCCGTGTGTATTCTCAGCGGGCCATCAGTGA
GAATTTATTGTCCGTCGATGGGTCAGGGGCGGTGTGGGTGACTTGTCCTC
GAACGGGCGATTCGTTTGCGCCATCGGATGTGAAGAATATTTTCGTCATT
TGA
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Synonyms
Publications