NO01G02550.1, NO01G02550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02550.1
Unique NameNO01G02550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length969
Alignment locationchr1:664743..666005 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:664743..666005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02550.1 vs.
Match: EWM29159.1 (hypothetical protein Naga_100007g65 [Nannochloropsis gaditana])

HSP 1 Score: 112.8 bits (281), Expect = 1.900e-21
Identity = 113/354 (31.92%), Postives = 158/354 (44.63%), Query Frame = 0 
Query:    2 VGSTPLARHFVRRELRPESMHGMGEPAQ---------GAAAAATAPGPNSKARDTGGLKQRRAHGGEEAMEKMLSRLTSKLQEKRKTFAFGFAVENGISGEESDRDSRPLDDLIRELEVDDSNRHKIERKRKEKKKKAQKLAKKGAGKAQAKDKGDEYVVMMEEKSADADTNALTKPSTEARSPPRSGDTSQGARADEAGAVNIGPPSKLLSPPPGLEFPYKND-----------EKKPLSTKNRRRKKSCATRVE-------EEKGVVVLHWDSWRDAATEEEKLRKRFGQGTRNLSAIARRGGKKGVGVIGLAGAALVNDNVG---MKKDASEDVGAL---LLNAFSFGFAL 323
            +G + LAR F RRELRP S+HGM +PA          G   A         AR +G  +QR      E  +KML+RL+ KLQEKR+TF FGF ++   +     +   PL+D++R+L  D  N    E+ +K  KKK  +       K + KD+ D        K +      +  P + +  P                       S  L P P +E   ++D             +P     R  + S A+R         +E+   ++H D W +A+TE+EKL+KRFGQGTRNL AI+RR  +KG  VI         D V    M K+    V      + NAFSFGFAL
Sbjct:    1 MGKSSLARQFARRELRPNSVHGMEDPANEGTRQRPFGGTCQAHPIRTSTFHARKSGAPEQRSGSHVHEGRDKMLTRLSCKLQEKRRTFTFGFEIDEDAARTRDRKHDPPLEDIVRDL--DSWNLGTDEQVKKRSKKKEGR-------KRRDKDRADTSAYRNNSKPSGHQLPGVIPPLSPSDQPSIH-------------------TSVQLHPQPVIEGVNEDDLEVPTDQGLYLSMQPTRASRRDSETSAASRDSKSSNIDFDEQDARIIHLDHWDEASTEKEKLQKRFGQGTRNLFAISRRNEQKGARVIR-------RDKVVCPLMSKELPSAVSMSNKPVANAFSFGFAL 319
The following BLAST results are available for this feature:
BLAST of NO01G02550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29159.11.900e-2131.92hypothetical protein Naga_100007g65 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02550NO01G02550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02550.1NO01G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02550.1.cds1NO01G02550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02550.1.cds2NO01G02550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02550.1 ID=NO01G02550.1|Name=NO01G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=969bp
ATGGTAGGCAGCACGCCCTTAGCAAGACACTTTGTGCGGCGGGAACTGCG
GCCCGAATCGATGCATGGGATGGGAGAGCCAGCTCAAGGTGCCGCGGCCG
CAGCCACCGCCCCCGGTCCAAACAGTAAAGCACGCGACACGGGGGGCTTG
AAGCAAAGGCGAGCTCACGGTGGGGAAGAGGCCATGGAGAAGATGCTGAG
CCGGCTTACGTCCAAATTGCAGGAGAAGCGCAAGACCTTCGCCTTTGGCT
TTGCGGTCGAAAACGGAATTAGTGGAGAAGAGAGCGACAGAGATAGCCGA
CCACTGGACGACTTGATCCGAGAGCTGGAGGTGGATGACAGCAACCGGCA
CAAAATAGAGCGGAAGAGGAAGGAGAAGAAGAAAAAGGCTCAGAAGCTCG
CGAAGAAGGGGGCAGGCAAAGCGCAGGCAAAAGACAAAGGCGATGAATAT
GTGGTGATGATGGAAGAAAAGTCTGCCGACGCAGACACTAACGCTCTTAC
CAAACCCTCTACTGAGGCACGTTCCCCACCACGTTCAGGAGACACCAGCC
AAGGCGCCAGGGCCGACGAAGCTGGAGCCGTCAACATCGGCCCACCAAGC
AAACTACTCAGCCCGCCACCAGGCCTCGAGTTTCCATACAAGAACGACGA
GAAGAAACCTCTAAGCACGAAGAATCGAAGGAGAAAGAAGAGCTGTGCGA
CAAGAGTAGAGGAAGAGAAGGGCGTGGTTGTACTTCACTGGGACAGTTGG
AGAGATGCCGCGACGGAAGAAGAAAAACTCCGCAAGCGGTTTGGTCAGGG
CACCCGCAACTTATCGGCTATCGCACGAAGGGGTGGAAAGAAAGGTGTGG
GCGTTATTGGACTTGCTGGGGCTGCTTTGGTAAACGATAATGTAGGGATG
AAAAAGGATGCGTCGGAAGACGTCGGCGCACTCTTGTTGAACGCATTTTC
TTTCGGGTTTGCCTTGTAG
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protein sequence of NO01G02550.1

>NO01G02550.1-protein ID=NO01G02550.1-protein|Name=NO01G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MVGSTPLARHFVRRELRPESMHGMGEPAQGAAAAATAPGPNSKARDTGGL
KQRRAHGGEEAMEKMLSRLTSKLQEKRKTFAFGFAVENGISGEESDRDSR
PLDDLIRELEVDDSNRHKIERKRKEKKKKAQKLAKKGAGKAQAKDKGDEY
VVMMEEKSADADTNALTKPSTEARSPPRSGDTSQGARADEAGAVNIGPPS
KLLSPPPGLEFPYKNDEKKPLSTKNRRRKKSCATRVEEEKGVVVLHWDSW
RDAATEEEKLRKRFGQGTRNLSAIARRGGKKGVGVIGLAGAALVNDNVGM
KKDASEDVGALLLNAFSFGFAL*
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mRNA from alignment at chr1:664743..666005+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02550.1 ID=NO01G02550.1|Name=NO01G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1263bp|location=Sequence derived from alignment at chr1:664743..666005+ (Nannochloropsis oceanica)
ATGGTAGGCAGCACGCCCTTAGCAAGACACTTTGTGCGGCGGGAACTGCG
GCCCGAATCGATGCATGGGATGGGAGAGCCAGCTCAAGGTGCCGCGGCCG
CAGCCACCGCCCCCGGTCCAAACAGTAAAGCACGCGACACGGGGGGCTTG
AAGCAAAGGCGAGCTCACGGTGGGGAAGAGGCCATGGAGAAGATGCTGAG
CCGGCTTACGTCCAAATTGCAGGAGAAGCGCAAGACCTTCGCCTTTGGCT
TTGCGGTCGAAAACGGAATTAGTGGAGAAGAGAGCGACAGAGATAGCCGA
CCACTGGACGACTTGATCCGAGAGCTGGAGGTGGATGACAGCAACCGGCA
CAAAATAGAGCGGAAGAGGAAGGAGAAGAAGAAAAAGGCTCAGAAGCTCG
CGAAGAAGGGGGCAGGCAAAGCGCAGGCAAAAGACAAAGGCGATGAATAT
GTGGTGATGATGGAAGAAAAGTCTGCCGACGCAGACACTAACGCTCTTAC
CAAACCCTCTACTGAGGCACGTTCCCCACCACGTTCAGGAGACACCAGCC
AAGGTATGTATGTGTTTGTGTCCGGGTGTGTTTGATTCCTCCAGACACCT
ATCTTTTCAAGTTACCTACCCAGTACATGTGAGTTCTCGATGATGAGAAG
CGAAAACCCTTAATCCATTCGCAGAAAAGCTTACAGCCACCAGAGTTAGC
CAACTCGCTGGCTACTGAAGCACTAATTTCCTTGGATGTCTGAGAGAACC
GCACATCTTAATTTATACAAAGTATTCACATCAACATTGATCAAATTAGC
TCCATGACCCGCTCCTAATTTGCCTCTGTACATACTCAACACACAAGGCG
CCAGGGCCGACGAAGCTGGAGCCGTCAACATCGGCCCACCAAGCAAACTA
CTCAGCCCGCCACCAGGCCTCGAGTTTCCATACAAGAACGACGAGAAGAA
ACCTCTAAGCACGAAGAATCGAAGGAGAAAGAAGAGCTGTGCGACAAGAG
TAGAGGAAGAGAAGGGCGTGGTTGTACTTCACTGGGACAGTTGGAGAGAT
GCCGCGACGGAAGAAGAAAAACTCCGCAAGCGGTTTGGTCAGGGCACCCG
CAACTTATCGGCTATCGCACGAAGGGGTGGAAAGAAAGGTGTGGGCGTTA
TTGGACTTGCTGGGGCTGCTTTGGTAAACGATAATGTAGGGATGAAAAAG
GATGCGTCGGAAGACGTCGGCGCACTCTTGTTGAACGCATTTTCTTTCGG
GTTTGCCTTGTAG
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Coding sequence (CDS) from alignment at chr1:664743..666005+

>NO01G02550.1 ID=NO01G02550.1|Name=NO01G02550.1|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr1:664743..666005+ (Nannochloropsis oceanica)
ATGGTAGGCAGCACGCCCTTAGCAAGACACTTTGTGCGGCGGGAACTGCG
GCCCGAATCGATGCATGGGATGGGAGAGCCAGCTCAAGGTGCCGCGGCCG
CAGCCACCGCCCCCGGTCCAAACAGTAAAGCACGCGACACGGGGGGCTTG
AAGCAAAGGCGAGCTCACGGTGGGGAAGAGGCCATGGAGAAGATGCTGAG
CCGGCTTACGTCCAAATTGCAGGAGAAGCGCAAGACCTTCGCCTTTGGCT
TTGCGGTCGAAAACGGAATTAGTGGAGAAGAGAGCGACAGAGATAGCCGA
CCACTGGACGACTTGATCCGAGAGCTGGAGGTGGATGACAGCAACCGGCA
CAAAATAGAGCGGAAGAGGAAGGAGAAGAAGAAAAAGGCTCAGAAGCTCG
CGAAGAAGGGGGCAGGCAAAGCGCAGGCAAAAGACAAAGGCGATGAATAT
GTGGTGATGATGGAAGAAAAGTCTGCCGACGCAGACACTAACGCTCTTAC
CAAACCCTCTACTGAGGCACGTTCCCCACCACGTTCAGGAGACACCAGCC
AAGGCGCCAGGGCCGACGAAGCTGGAGCCGTCAACATCGGCCCACCAAGC
AAACTACTCAGCCCGCCACCAGGCCTCGAGTTTCCATACAAGAACGACGA
GAAGAAACCTCTAAGCACGAAGAATCGAAGGAGAAAGAAGAGCTGTGCGA
CAAGAGTAGAGGAAGAGAAGGGCGTGGTTGTACTTCACTGGGACAGTTGG
AGAGATGCCGCGACGGAAGAAGAAAAACTCCGCAAGCGGTTTGGTCAGGG
CACCCGCAACTTATCGGCTATCGCACGAAGGGGTGGAAAGAAAGGTGTGG
GCGTTATTGGACTTGCTGGGGCTGCTTTGGTAAACGATAATGTAGGGATG
AAAAAGGATGCGTCGGAAGACGTCGGCGCACTCTTGTTGAACGCATTTTC
TTTCGGGTTTGCCTTGTAG
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Synonyms
Publications