NO01G02540.1, NO01G02540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02540.1
Unique NameNO01G02540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1494
Alignment locationchr1:662527..664020 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:662527..664020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02540.1 vs.
Match: XP_005856363.1 (gdsl-like protein, partial [Nannochloropsis gaditana CCMP526]; EKU19998.1 gdsl-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 385.2 bits (988), Expect = 3.100e-103
Identity = 216/382 (56.54%), Postives = 255/382 (66.75%), Query Frame = 0 
Query:    1 MLGFRRQSKRDRGMSIRNLSHEGVEESRNLWHTGGAPARLGKTHKPVVLVMGDSHTQGMYGACYVKLLQAKFPKFHIVNGGRNGEVLESIRRRTGSYLKTYGGDIVGVIILGGTNDCLANLNSSTRTLIRLYNPFLKELPPLTEYTKTLHKLLAMIYSHSASSYIDICCVTPPIIAEFPSSPENVVVDSLCEAIRKTVRDFTHVKNE-------NVRARGSSDSLEKSAGTTGRIHGVISISIEENVEVQDGKAHKQQQQKQQQQQSLQPTHSLINYSSHHRYCPSTSALFPSSSCFGNSKHPKPRLRRRLHCIDFNARMKRHLEEVLGHKTRKAFEPDFFNMCFNSGMSLLSGALVKWDTVSAARGLALHNDGVHLNERAI 376
            MLG  R  K +RG SIR L  E +  S N W  G       K  +PVVLVMGDSHTQGMYGA YV++LQA+FP F +VN GRNGEVLESIRRRT   L+ +GGD+VGV+ILGGTNDCLANLN+STR LIRLYNPFL+ELP L+EYTK LH LLA IY+H  SSYIDICCVTPP+IAE P S EN +VDS+C+ IR TVR  TH + E           +G+   +E + G    +   +S S         GK  ++     Q +Q              HRY  +      SS     S  P PR RRRLHC+DFN  MKRHLEEV+  K RKAFEPDFFNMCFNSG+SL+SG+++KWD+VSAARGLALHNDGVH+NERAI
Sbjct:   13 MLGHIR--KCNRGKSIRKLPQEDMGGSGNWWRNGTTALYPCKVRRPVVLVMGDSHTQGMYGANYVEVLQARFPAFRLVNAGRNGEVLESIRRRTIPLLQAFGGDVVGVVILGGTNDCLANLNASTRALIRLYNPFLRELPLLSEYTKILHDLLATIYAHEVSSYIDICCVTPPMIAECPDSLENKLVDSVCDDIRATVRRITHKRREKGVENLVTQEKKGADGRMEVTTGAGVLLPPALSSSELPKTCWPGGKTEERDADDWQHEQG-------------HRYWRARQGHHRSSL---TSSGP-PRPRRRLHCLDFNMHMKRHLEEVIADKPRKAFEPDFFNMCFNSGVSLVSGSVLKWDSVSAARGLALHNDGVHMNERAI 375
The following BLAST results are available for this feature:
BLAST of NO01G02540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856363.13.100e-10356.54gdsl-like protein, partial [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02540NO01G02540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02540.1NO01G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02540.1.cds1NO01G02540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02540.1 ID=NO01G02540.1|Name=NO01G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp
ATGCTGGGCTTTCGCCGCCAGAGCAAGCGGGACCGCGGTATGTCCATTCG
CAACCTCTCACACGAGGGCGTTGAAGAGAGTAGAAACCTGTGGCACACCG
GGGGGGCTCCGGCTCGTCTGGGTAAGACGCACAAGCCCGTAGTCCTTGTT
ATGGGAGACTCGCATACGCAAGGCATGTACGGGGCCTGTTATGTCAAACT
GCTCCAAGCCAAGTTTCCTAAGTTTCACATCGTCAACGGAGGCCGGAATG
GCGAAGTCCTGGAAAGCATTCGAAGACGTACTGGCTCTTACCTCAAGACG
TATGGTGGTGACATAGTGGGGGTCATTATCCTAGGCGGCACCAACGACTG
TCTCGCCAACCTCAATTCCTCGACACGGACGCTCATTCGTCTATATAACC
CTTTTTTGAAGGAACTCCCACCCCTGACCGAGTACACCAAGACGTTACAC
AAGCTTTTGGCCATGATTTACTCGCATTCGGCCTCTTCTTACATCGATAT
TTGCTGCGTGACCCCGCCAATTATCGCTGAGTTTCCTAGCTCTCCTGAAA
ACGTGGTGGTGGATAGTCTGTGTGAGGCCATCCGGAAGACAGTGCGCGAT
TTCACGCACGTTAAGAACGAGAACGTGCGCGCCCGGGGGTCATCTGACAG
CCTGGAAAAGAGTGCTGGGACAACTGGAAGAATTCATGGGGTGATTAGCA
TCAGCATTGAGGAGAATGTGGAAGTGCAAGATGGCAAAGCTCATAAGCAA
CAGCAGCAGAAGCAGCAGCAACAGCAGTCGCTTCAGCCTACGCATTCCCT
TATCAACTATTCTTCTCACCACAGATACTGCCCTTCCACATCTGCCCTTT
TCCCTTCGTCTTCATGCTTTGGAAACTCCAAGCATCCCAAACCGCGGCTA
CGTCGTCGTTTGCACTGCATCGATTTTAACGCGCGGATGAAACGACATCT
GGAGGAAGTGCTTGGTCATAAAACGCGCAAAGCATTTGAGCCCGACTTTT
TTAATATGTGTTTCAATAGCGGGATGAGCTTGTTAAGCGGGGCTTTGGTG
AAATGGGACACAGTGTCGGCAGCTCGGGGATTGGCGCTGCACAACGACGG
CGTGCACTTGAATGAAAGGGCGATCGAGCCGCTCGTCAACTCATTGAGTG
CCTGGTTGGAAGCACTCCAAGAAGAAATCTACATGCAGCATACCCGGGAG
GCATATGCGTCGGCGTCTTCAGGGGAGCAGCTTTTGTCTTCTTTGGTCTC
TACCTTGAAATTCGCAGAGGAAACTATAAGGGGGGGGGAAGGACGGGAGG
CCGCGATTACAGCTGAACGCGGGAAGAACGGATCGGGAATAGACATTGCA
GAGAGACATGGAGATATTTTAAGCATGGTTGATAGTGATGTTGAGGTCAT
GCCTGAAAATGACACCATTGAGGCCAGTAAGGGGGTTGATATGGCGGGAG
AGGCCAGTTTGGTTAGGCCCGTGATGAGGCGGGCATTGGCGTGA
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protein sequence of NO01G02540.1

>NO01G02540.1-protein ID=NO01G02540.1-protein|Name=NO01G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp
MLGFRRQSKRDRGMSIRNLSHEGVEESRNLWHTGGAPARLGKTHKPVVLV
MGDSHTQGMYGACYVKLLQAKFPKFHIVNGGRNGEVLESIRRRTGSYLKT
YGGDIVGVIILGGTNDCLANLNSSTRTLIRLYNPFLKELPPLTEYTKTLH
KLLAMIYSHSASSYIDICCVTPPIIAEFPSSPENVVVDSLCEAIRKTVRD
FTHVKNENVRARGSSDSLEKSAGTTGRIHGVISISIEENVEVQDGKAHKQ
QQQKQQQQQSLQPTHSLINYSSHHRYCPSTSALFPSSSCFGNSKHPKPRL
RRRLHCIDFNARMKRHLEEVLGHKTRKAFEPDFFNMCFNSGMSLLSGALV
KWDTVSAARGLALHNDGVHLNERAIEPLVNSLSAWLEALQEEIYMQHTRE
AYASASSGEQLLSSLVSTLKFAEETIRGGEGREAAITAERGKNGSGIDIA
ERHGDILSMVDSDVEVMPENDTIEASKGVDMAGEASLVRPVMRRALA*
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mRNA from alignment at chr1:662527..664020-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02540.1 ID=NO01G02540.1|Name=NO01G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp|location=Sequence derived from alignment at chr1:662527..664020- (Nannochloropsis oceanica)
ATGCTGGGCTTTCGCCGCCAGAGCAAGCGGGACCGCGGTATGTCCATTCG
CAACCTCTCACACGAGGGCGTTGAAGAGAGTAGAAACCTGTGGCACACCG
GGGGGGCTCCGGCTCGTCTGGGTAAGACGCACAAGCCCGTAGTCCTTGTT
ATGGGAGACTCGCATACGCAAGGCATGTACGGGGCCTGTTATGTCAAACT
GCTCCAAGCCAAGTTTCCTAAGTTTCACATCGTCAACGGAGGCCGGAATG
GCGAAGTCCTGGAAAGCATTCGAAGACGTACTGGCTCTTACCTCAAGACG
TATGGTGGTGACATAGTGGGGGTCATTATCCTAGGCGGCACCAACGACTG
TCTCGCCAACCTCAATTCCTCGACACGGACGCTCATTCGTCTATATAACC
CTTTTTTGAAGGAACTCCCACCCCTGACCGAGTACACCAAGACGTTACAC
AAGCTTTTGGCCATGATTTACTCGCATTCGGCCTCTTCTTACATCGATAT
TTGCTGCGTGACCCCGCCAATTATCGCTGAGTTTCCTAGCTCTCCTGAAA
ACGTGGTGGTGGATAGTCTGTGTGAGGCCATCCGGAAGACAGTGCGCGAT
TTCACGCACGTTAAGAACGAGAACGTGCGCGCCCGGGGGTCATCTGACAG
CCTGGAAAAGAGTGCTGGGACAACTGGAAGAATTCATGGGGTGATTAGCA
TCAGCATTGAGGAGAATGTGGAAGTGCAAGATGGCAAAGCTCATAAGCAA
CAGCAGCAGAAGCAGCAGCAACAGCAGTCGCTTCAGCCTACGCATTCCCT
TATCAACTATTCTTCTCACCACAGATACTGCCCTTCCACATCTGCCCTTT
TCCCTTCGTCTTCATGCTTTGGAAACTCCAAGCATCCCAAACCGCGGCTA
CGTCGTCGTTTGCACTGCATCGATTTTAACGCGCGGATGAAACGACATCT
GGAGGAAGTGCTTGGTCATAAAACGCGCAAAGCATTTGAGCCCGACTTTT
TTAATATGTGTTTCAATAGCGGGATGAGCTTGTTAAGCGGGGCTTTGGTG
AAATGGGACACAGTGTCGGCAGCTCGGGGATTGGCGCTGCACAACGACGG
CGTGCACTTGAATGAAAGGGCGATCGAGCCGCTCGTCAACTCATTGAGTG
CCTGGTTGGAAGCACTCCAAGAAGAAATCTACATGCAGCATACCCGGGAG
GCATATGCGTCGGCGTCTTCAGGGGAGCAGCTTTTGTCTTCTTTGGTCTC
TACCTTGAAATTCGCAGAGGAAACTATAAGGGGGGGGGAAGGACGGGAGG
CCGCGATTACAGCTGAACGCGGGAAGAACGGATCGGGAATAGACATTGCA
GAGAGACATGGAGATATTTTAAGCATGGTTGATAGTGATGTTGAGGTCAT
GCCTGAAAATGACACCATTGAGGCCAGTAAGGGGGTTGATATGGCGGGAG
AGGCCAGTTTGGTTAGGCCCGTGATGAGGCGGGCATTGGCGTGA
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Coding sequence (CDS) from alignment at chr1:662527..664020-

>NO01G02540.1 ID=NO01G02540.1|Name=NO01G02540.1|organism=Nannochloropsis oceanica|type=CDS|length=1494bp|location=Sequence derived from alignment at chr1:662527..664020- (Nannochloropsis oceanica)
ATGCTGGGCTTTCGCCGCCAGAGCAAGCGGGACCGCGGTATGTCCATTCG
CAACCTCTCACACGAGGGCGTTGAAGAGAGTAGAAACCTGTGGCACACCG
GGGGGGCTCCGGCTCGTCTGGGTAAGACGCACAAGCCCGTAGTCCTTGTT
ATGGGAGACTCGCATACGCAAGGCATGTACGGGGCCTGTTATGTCAAACT
GCTCCAAGCCAAGTTTCCTAAGTTTCACATCGTCAACGGAGGCCGGAATG
GCGAAGTCCTGGAAAGCATTCGAAGACGTACTGGCTCTTACCTCAAGACG
TATGGTGGTGACATAGTGGGGGTCATTATCCTAGGCGGCACCAACGACTG
TCTCGCCAACCTCAATTCCTCGACACGGACGCTCATTCGTCTATATAACC
CTTTTTTGAAGGAACTCCCACCCCTGACCGAGTACACCAAGACGTTACAC
AAGCTTTTGGCCATGATTTACTCGCATTCGGCCTCTTCTTACATCGATAT
TTGCTGCGTGACCCCGCCAATTATCGCTGAGTTTCCTAGCTCTCCTGAAA
ACGTGGTGGTGGATAGTCTGTGTGAGGCCATCCGGAAGACAGTGCGCGAT
TTCACGCACGTTAAGAACGAGAACGTGCGCGCCCGGGGGTCATCTGACAG
CCTGGAAAAGAGTGCTGGGACAACTGGAAGAATTCATGGGGTGATTAGCA
TCAGCATTGAGGAGAATGTGGAAGTGCAAGATGGCAAAGCTCATAAGCAA
CAGCAGCAGAAGCAGCAGCAACAGCAGTCGCTTCAGCCTACGCATTCCCT
TATCAACTATTCTTCTCACCACAGATACTGCCCTTCCACATCTGCCCTTT
TCCCTTCGTCTTCATGCTTTGGAAACTCCAAGCATCCCAAACCGCGGCTA
CGTCGTCGTTTGCACTGCATCGATTTTAACGCGCGGATGAAACGACATCT
GGAGGAAGTGCTTGGTCATAAAACGCGCAAAGCATTTGAGCCCGACTTTT
TTAATATGTGTTTCAATAGCGGGATGAGCTTGTTAAGCGGGGCTTTGGTG
AAATGGGACACAGTGTCGGCAGCTCGGGGATTGGCGCTGCACAACGACGG
CGTGCACTTGAATGAAAGGGCGATCGAGCCGCTCGTCAACTCATTGAGTG
CCTGGTTGGAAGCACTCCAAGAAGAAATCTACATGCAGCATACCCGGGAG
GCATATGCGTCGGCGTCTTCAGGGGAGCAGCTTTTGTCTTCTTTGGTCTC
TACCTTGAAATTCGCAGAGGAAACTATAAGGGGGGGGGAAGGACGGGAGG
CCGCGATTACAGCTGAACGCGGGAAGAACGGATCGGGAATAGACATTGCA
GAGAGACATGGAGATATTTTAAGCATGGTTGATAGTGATGTTGAGGTCAT
GCCTGAAAATGACACCATTGAGGCCAGTAAGGGGGTTGATATGGCGGGAG
AGGCCAGTTTGGTTAGGCCCGTGATGAGGCGGGCATTGGCGTGA
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Synonyms
Publications