NO01G02530.1, NO01G02530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02530.1
Unique NameNO01G02530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1161
Alignment locationchr1:660311..661471 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:660311..661471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02530.1 vs.
Match: EWM29151.1 (zinc finger (c3hc4-type ring finger) family protein [Nannochloropsis gaditana])

HSP 1 Score: 530.8 bits (1366), Expect = 3.600e-147
Identity = 283/384 (73.70%), Postives = 312/384 (81.25%), Query Frame = 0 
Query:    1 MVQTRS-SPGHSIPAPDATAVAGAAAATTEGEDHGNSSSASTEKTTPNRHDISTSSGGGSSSSSCGSSEGLSPRPLTPTYFDAVTAPVGTGTLTLGDLECGVCLSLLCEAVTTPCGHSLCRLCLVQALQRQTKCPVCRAVCMINAEDHAETRLLTRLAKRAFPILYEQRLEETRQEREAMKLLLPIFFYNLPIFPGEVLRLHLFEPRYRLMMQRIVDGSRRFAYVPNYSNYRGAKDDVALIAEVKEVRFMRDGRSELEARIVGRYTIVESPYVEEGTGGLSYCRLAELRDVAPASSEAGEALMKVSAKAREIAHALFYERRDIKAVVVDRYGDMPGPHTPEALSLWIAAVLPTENRQEKHALLVCTDTLYRLNTCLAKLQALRG 384
            MV+TRS SP   +PA    AV   AAA T  ED     +  +   + + ++ S      ++ SS  SS     RPLTPT+FDAV +P     LTLGDLECGVCL LLCEAVTTPCGHSLCRLCLV+ALQRQTKCPVCRAVCMINAEDHAETRLLTRLAKRAFP LYEQRLEETRQEREA+KLLLPIFFYNLPIFPGE LRLHLFEPRYRLMMQRIV+GSRRFAYVPNYSNYR    D+ALIAE+KEVRFMRDGRSELEARI GR+TI E PYVE+GTGGLSYCRL ELRD +P S+EA +AL + S KARE+AHA+F ERRDIKAVVVDRYG+MPGP TPEALSLWIAAVLPTENRQ KH LLV TDT +RL  C++KLQALRG
Sbjct:    1 MVRTRSRSPEQPVPA----AVFPVAAAATPAEDRQCYDANRSAWNSSHSNNSSCDCNRSTNHSSHDSSHAPPSRPLTPTFFDAVASPARGEMLTLGDLECGVCLGLLCEAVTTPCGHSLCRLCLVRALQRQTKCPVCRAVCMINAEDHAETRLLTRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLFEPRYRLMMQRIVNGSRRFAYVPNYSNYRAKAGDIALIAELKEVRFMRDGRSELEARIAGRFTIAEDPYVEDGTGGLSYCRLKELRDESPKSAEASQALRQASEKAREMAHAIFLERRDIKAVVVDRYGEMPGPQTPEALSLWIAAVLPTENRQIKHDLLVSTDTSHRLEVCISKLQALRG 380
The following BLAST results are available for this feature:
BLAST of NO01G02530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29151.13.600e-14773.70zinc finger (c3hc4-type ring finger) family protei... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02530NO01G02530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02530.1NO01G02530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02530.1.cds1NO01G02530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02530.1 ID=NO01G02530.1|Name=NO01G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1161bp
ATGGTACAAACACGCAGCTCACCTGGCCACTCGATTCCGGCGCCAGACGC
CACCGCAGTCGCCGGTGCTGCTGCCGCCACGACAGAGGGCGAGGACCACG
GTAATAGCAGCAGCGCTAGCACCGAAAAAACTACTCCTAACAGACATGAT
ATCAGTACTAGCAGCGGCGGCGGCAGTAGTAGCTCAAGCTGTGGCAGCAG
TGAAGGTCTGTCACCTCGCCCCCTTACACCGACATACTTTGATGCGGTGA
CGGCGCCTGTGGGGACCGGGACACTGACGCTAGGTGATCTGGAGTGCGGC
GTCTGTCTAAGCTTGTTGTGTGAAGCTGTTACAACGCCATGCGGTCACAG
TCTCTGCCGACTCTGTTTGGTTCAGGCATTGCAACGACAAACCAAGTGCC
CGGTCTGTCGAGCTGTTTGCATGATCAACGCGGAGGACCACGCCGAGACC
CGCCTTTTGACCCGCCTAGCCAAACGAGCCTTTCCTATCCTGTACGAGCA
ACGCTTGGAGGAAACGCGCCAAGAACGAGAAGCGATGAAGCTGTTGTTGC
CCATCTTCTTTTACAATCTTCCTATTTTTCCTGGGGAGGTTTTGCGTTTA
CACTTGTTCGAGCCTCGTTACCGCTTGATGATGCAGCGCATTGTGGACGG
TAGCCGACGGTTTGCTTACGTACCTAATTACTCTAATTATCGCGGCGCAA
AAGATGACGTGGCTCTTATAGCTGAAGTAAAGGAAGTACGGTTCATGCGC
GACGGACGAAGTGAGCTCGAGGCTCGAATCGTGGGTCGCTACACCATTGT
CGAAAGTCCTTACGTAGAGGAAGGGACCGGGGGATTGAGCTATTGTCGGC
TGGCAGAGCTTCGTGATGTGGCCCCAGCCTCATCGGAGGCTGGAGAGGCT
TTGATGAAAGTTAGCGCCAAGGCACGAGAGATTGCACATGCGCTGTTTTA
TGAGAGGAGGGACATAAAAGCAGTGGTTGTGGATAGGTACGGGGATATGC
CTGGCCCGCACACACCTGAAGCGCTTTCGCTTTGGATCGCTGCAGTTTTG
CCCACAGAAAATCGGCAGGAGAAGCATGCGTTGCTCGTATGTACGGATAC
ACTGTACCGCCTCAACACGTGCTTGGCCAAGTTGCAGGCGTTGCGGGGTG
AGGCTGCTTAA
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protein sequence of NO01G02530.1

>NO01G02530.1-protein ID=NO01G02530.1-protein|Name=NO01G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MVQTRSSPGHSIPAPDATAVAGAAAATTEGEDHGNSSSASTEKTTPNRHD
ISTSSGGGSSSSSCGSSEGLSPRPLTPTYFDAVTAPVGTGTLTLGDLECG
VCLSLLCEAVTTPCGHSLCRLCLVQALQRQTKCPVCRAVCMINAEDHAET
RLLTRLAKRAFPILYEQRLEETRQEREAMKLLLPIFFYNLPIFPGEVLRL
HLFEPRYRLMMQRIVDGSRRFAYVPNYSNYRGAKDDVALIAEVKEVRFMR
DGRSELEARIVGRYTIVESPYVEEGTGGLSYCRLAELRDVAPASSEAGEA
LMKVSAKAREIAHALFYERRDIKAVVVDRYGDMPGPHTPEALSLWIAAVL
PTENRQEKHALLVCTDTLYRLNTCLAKLQALRGEAA*
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mRNA from alignment at chr1:660311..661471-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02530.1 ID=NO01G02530.1|Name=NO01G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1161bp|location=Sequence derived from alignment at chr1:660311..661471- (Nannochloropsis oceanica)
ATGGTACAAACACGCAGCTCACCTGGCCACTCGATTCCGGCGCCAGACGC
CACCGCAGTCGCCGGTGCTGCTGCCGCCACGACAGAGGGCGAGGACCACG
GTAATAGCAGCAGCGCTAGCACCGAAAAAACTACTCCTAACAGACATGAT
ATCAGTACTAGCAGCGGCGGCGGCAGTAGTAGCTCAAGCTGTGGCAGCAG
TGAAGGTCTGTCACCTCGCCCCCTTACACCGACATACTTTGATGCGGTGA
CGGCGCCTGTGGGGACCGGGACACTGACGCTAGGTGATCTGGAGTGCGGC
GTCTGTCTAAGCTTGTTGTGTGAAGCTGTTACAACGCCATGCGGTCACAG
TCTCTGCCGACTCTGTTTGGTTCAGGCATTGCAACGACAAACCAAGTGCC
CGGTCTGTCGAGCTGTTTGCATGATCAACGCGGAGGACCACGCCGAGACC
CGCCTTTTGACCCGCCTAGCCAAACGAGCCTTTCCTATCCTGTACGAGCA
ACGCTTGGAGGAAACGCGCCAAGAACGAGAAGCGATGAAGCTGTTGTTGC
CCATCTTCTTTTACAATCTTCCTATTTTTCCTGGGGAGGTTTTGCGTTTA
CACTTGTTCGAGCCTCGTTACCGCTTGATGATGCAGCGCATTGTGGACGG
TAGCCGACGGTTTGCTTACGTACCTAATTACTCTAATTATCGCGGCGCAA
AAGATGACGTGGCTCTTATAGCTGAAGTAAAGGAAGTACGGTTCATGCGC
GACGGACGAAGTGAGCTCGAGGCTCGAATCGTGGGTCGCTACACCATTGT
CGAAAGTCCTTACGTAGAGGAAGGGACCGGGGGATTGAGCTATTGTCGGC
TGGCAGAGCTTCGTGATGTGGCCCCAGCCTCATCGGAGGCTGGAGAGGCT
TTGATGAAAGTTAGCGCCAAGGCACGAGAGATTGCACATGCGCTGTTTTA
TGAGAGGAGGGACATAAAAGCAGTGGTTGTGGATAGGTACGGGGATATGC
CTGGCCCGCACACACCTGAAGCGCTTTCGCTTTGGATCGCTGCAGTTTTG
CCCACAGAAAATCGGCAGGAGAAGCATGCGTTGCTCGTATGTACGGATAC
ACTGTACCGCCTCAACACGTGCTTGGCCAAGTTGCAGGCGTTGCGGGGTG
AGGCTGCTTAA
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Coding sequence (CDS) from alignment at chr1:660311..661471-

>NO01G02530.1 ID=NO01G02530.1|Name=NO01G02530.1|organism=Nannochloropsis oceanica|type=CDS|length=1161bp|location=Sequence derived from alignment at chr1:660311..661471- (Nannochloropsis oceanica)
ATGGTACAAACACGCAGCTCACCTGGCCACTCGATTCCGGCGCCAGACGC
CACCGCAGTCGCCGGTGCTGCTGCCGCCACGACAGAGGGCGAGGACCACG
GTAATAGCAGCAGCGCTAGCACCGAAAAAACTACTCCTAACAGACATGAT
ATCAGTACTAGCAGCGGCGGCGGCAGTAGTAGCTCAAGCTGTGGCAGCAG
TGAAGGTCTGTCACCTCGCCCCCTTACACCGACATACTTTGATGCGGTGA
CGGCGCCTGTGGGGACCGGGACACTGACGCTAGGTGATCTGGAGTGCGGC
GTCTGTCTAAGCTTGTTGTGTGAAGCTGTTACAACGCCATGCGGTCACAG
TCTCTGCCGACTCTGTTTGGTTCAGGCATTGCAACGACAAACCAAGTGCC
CGGTCTGTCGAGCTGTTTGCATGATCAACGCGGAGGACCACGCCGAGACC
CGCCTTTTGACCCGCCTAGCCAAACGAGCCTTTCCTATCCTGTACGAGCA
ACGCTTGGAGGAAACGCGCCAAGAACGAGAAGCGATGAAGCTGTTGTTGC
CCATCTTCTTTTACAATCTTCCTATTTTTCCTGGGGAGGTTTTGCGTTTA
CACTTGTTCGAGCCTCGTTACCGCTTGATGATGCAGCGCATTGTGGACGG
TAGCCGACGGTTTGCTTACGTACCTAATTACTCTAATTATCGCGGCGCAA
AAGATGACGTGGCTCTTATAGCTGAAGTAAAGGAAGTACGGTTCATGCGC
GACGGACGAAGTGAGCTCGAGGCTCGAATCGTGGGTCGCTACACCATTGT
CGAAAGTCCTTACGTAGAGGAAGGGACCGGGGGATTGAGCTATTGTCGGC
TGGCAGAGCTTCGTGATGTGGCCCCAGCCTCATCGGAGGCTGGAGAGGCT
TTGATGAAAGTTAGCGCCAAGGCACGAGAGATTGCACATGCGCTGTTTTA
TGAGAGGAGGGACATAAAAGCAGTGGTTGTGGATAGGTACGGGGATATGC
CTGGCCCGCACACACCTGAAGCGCTTTCGCTTTGGATCGCTGCAGTTTTG
CCCACAGAAAATCGGCAGGAGAAGCATGCGTTGCTCGTATGTACGGATAC
ACTGTACCGCCTCAACACGTGCTTGGCCAAGTTGCAGGCGTTGCGGGGTG
AGGCTGCTTAA
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Synonyms
Publications