|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr1 | genome | chr1:647613..650493 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02490.1 vs.
Match: EWM29201.1 (hypothetical protein Naga_100007g71 [Nannochloropsis gaditana]) HSP 1 Score: 736.9 bits (1901), Expect = 5.700e-209 Identity = 359/476 (75.42%), Postives = 406/476 (85.29%), Query Frame = 0
Query: 81 MDIVDSVRGVYPFETFLTRWCGSATLGELKRGNIAQFLAWALLSESVESLLPKDFTMIMRMVDMVDTRFELHLEHGLNTDVRTLRMTLEPLEVIHRPLCVYLCVTYVPRFFGNCVLRLQGFERLNYEGTVYWYRPSQDWPKTARQLPLIFFHGVSPGQCAYAGLTTLLSEGRSAVLVEIPHIAMSLEAFQAKSEKEVTTAVKAICSKHQIQHFMVAGHSYGTIWAGWVLRAMREEVKQAVLLDPVCILLCLPNTPFNFLYRLPHDPPSHLPKAPSIFTAAGIKKRVLDYGLHYVVSRELTIANAMRRQFWWHKKILHAEEIHCPIVVGLASDDILLSAPAIRKYLQDNCTDLEIIWWQDFSHGEILTSLPCQHNLDQTIRAQEEKYYHGRLTRPIWEYPDDEVPPSNHLEA---KRSKSRMRLLQESSTGGGDINSNTPSRRSPSKLVTPLSPASSSSASSCSTSDSNCQRRKQRW 554
MDIVDSVRGVYPFETFLTRWCGSATL ELKRGN+AQFLAWALLS+ VE LLP+D+TMIMRMVDM+D R+ L+LE GLNTDVRTLRMTLEPLEVIHRPLCVYL VT +PR FGNCVLRLQGFERL ++G VYWYRPS++WP +ARQLPL+FFHGVSPGQCAYAGLTTLLSEGRSAVLVEIPHIAMSLEAF+AK+E EVT A+K+IC++H I+HF VAGHSYGTIWAGWVLRAM ++V QAVLLDPVCILLCLPNTPFNFLYRLPHDPPSH+ +PSIFTAAGIKKR+LDYGLHYVVSRELTIANAMRRQFWWH+KILHAE+IHCP+VVGLASDDILLSAPAIRKYLQDNC+DL+IIWWQDFSHGEILTSLPCQH+LDQ IRAQEE+YYH TRP WEY PP+ + +R +SR R + E+ + S T S L+ L ASS+S + + ++R+ RW
Sbjct: 1 MDIVDSVRGVYPFETFLTRWCGSATLSELKRGNVAQFLAWALLSQGVEDLLPRDYTMIMRMVDMIDQRYTLNLEQGLNTDVRTLRMTLEPLEVIHRPLCVYLGVTVIPRLFGNCVLRLQGFERLEHQGLVYWYRPSREWPSSARQLPLVFFHGVSPGQCAYAGLTTLLSEGRSAVLVEIPHIAMSLEAFRAKTEAEVTEAMKSICARHHIRHFTVAGHSYGTIWAGWVLRAMPKKVMQAVLLDPVCILLCLPNTPFNFLYRLPHDPPSHVQTSPSIFTAAGIKKRILDYGLHYVVSRELTIANAMRRQFWWHQKILHAEDIHCPVVVGLASDDILLSAPAIRKYLQDNCSDLDIIWWQDFSHGEILTSLPCQHSLDQAIRAQEERYYHRGPTRPYWEYLPGHGPPAVSADTSGLRRCRSRSRRVSENLSSP---FSQTSFVTSSPDLLEELDTASSASGAGLRKHSPSDEQRR-RW 472
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02490.1 ID=NO01G02490.1|Name=NO01G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2725bp
TGATGGGCGGCCGTTTCGGCAGGAAGTCACGATTCAAATTGCCGTGTCCA
AATAAATGGACATCATCACCCGTACACCACGCTAGCACTACGATCAAATC
CATCCACACATCATAAAGGCACACACGATATCCACCATCCTAGAGACTGG
GTCCACGGCCTCCTTCTACTTTAGGTGTGGGCCATGAACGGCTCCAAAAG
AGAGCGAGAGATGATTCATTCCCAAGCGCCAAGGAAGACATTCATCGTGC
TGGGTTGTCGATTTGATATATCGAATTCTTCTCACACCATCCCCACACAT
ACTATCACATTTTTCATAGCGTCTTTGAGCGCCGGAGGCTCTTGTCATTT
CGCGCGGCTTTTGCCGGATGGCGTCTGCCGCGGCGTTGGCGTACCTACCA
GCCTCGGGCGACGACTCTTGGCCATGGGCACTGCTTGGCTTGACACCAAT
ACAGGCGCTCGAGCTGCTATTGCCCTGTCTCTTCATATGCTGGCTTTTTT
GCGAGGCCCTCTTTTACATTGTGATGCTCCTGGTGCATCGCCGCTTGGAC
GTGCTCACTTTGCCCGAACGAAGCAAGCATGACCCTGAAGAGTACGTGCA
CAAGGTGATGGACATCGTGGATAGCGTGCGAGGTGTCTACCCGTTTGAGA
CTTTCCTAACGCGGTGGTGTGGTTCCGCGACCCTTGGTGAGCTCAAAAGG
GGCAATATCGCACAGTTTCTGGCCTGGGCATTGCTCTCCGAGAGTGTGGA
AAGCCTCCTCCCCAAAGACTTTACGATGATCATGCGCATGGTCGACATGG
TGGACACACGCTTCGAGCTCCACCTCGAGCACGGCCTCAATACGGACGTA
CGGACTTTAAGGATGACACTGGAGCCTCTTGAGGTCATCCATCGCCCGCT
TTGCGTCTACTTGTGCGTCACTTATGTCCCACGCTTTTTTGGCAATTGCG
TGCTCCGTCTACAGGGCTTTGAGCGTCTCAACTATGAAGGCACCGTCTAC
TGGTACCGCCCAAGCCAGGATTGGCCCAAGACAGCTCGGCAACTACCGTT
GATCTTTTTCCATGGCGTTAGTCCTGGACAGTGCGCTTACGCCGGCTTAA
CCACCTTGTTGAGTGAAGGACGTTCAGCGGTGCTTGTTGAAATCCCGCAC
ATCGCCATGTCGCTGGAGGCCTTCCAGGCTAAGTCTGAGAAGGAAGTCAC
AACGGCTGTGAAGGCTATTTGTTCGAAGCATCAAATCCAACATTTTATGG
TGGCTGGGCACAGCTACGGGACCATTTGGGCAGGGTGGGTGCTTCGGGCT
ATGCGAGAAGAGGTGAAGCAAGCCGTGCTCCTCGACCCAGTCTGCATCCT
CCTCTGCCTTCCCAACACACCTTTCAACTTCCTCTACCGTCTGCCCCACG
ATCCACCTTCTCACCTCCCAAAAGCGCCCAGCATTTTCACGGCCGCGGGG
ATCAAAAAGCGCGTCCTGGATTATGGCCTCCATTACGTTGTGTCCCGCGA
ACTGACCATCGCCAATGCCATGCGACGGCAATTCTGGTGGCACAAGAAGA
TTCTACACGCCGAGGAAATCCACTGCCCCATAGTGGTGGGCCTCGCGAGC
GATGATATCTTGCTGTCGGCCCCGGCCATCCGCAAGTACTTGCAGGATAA
CTGCACGGACCTCGAAATTATCTGGTGGCAAGATTTCTCCCACGGAGAGA
TCCTGACCTCCCTCCCTTGCCAGCACAACCTGGACCAAACCATTCGCGCA
CAGGAGGAGAAGTACTACCATGGTCGCCTTACACGGCCTATTTGGGAATA
TCCTGACGATGAGGTTCCTCCTTCGAACCATTTAGAGGCAAAACGCTCCA
AGTCCAGGATGCGCTTGTTACAAGAGAGCAGTACTGGTGGGGGCGACATC
AACAGCAACACTCCCTCACGAAGGTCTCCTAGCAAGCTTGTAACTCCTCT
ATCCCCCGCCTCATCATCATCTGCTTCATCCTGCAGCACGAGTGACTCTA
ATTGTCAGAGACGGAAACAGCGGTGGCCGCAAGCCTGTGAGGATACCTCT
GATTGCAATTTTACATATTCTTGCTCGAGGGCTACCACTCCCACCACCCC
TACCGAACCGCGGCTTGCTTCTTTGAGGACAGGCGCTGGACGACTCGAGA
ACTTACCCTCAGCCGAGCAGCGTCGCCGTTGGCAGAAGCAGCAGGACCGA
GAACGGGAGCAAGCGGCGGCTGAAGCAGAGGAGGAAGCACGATGTCATCC
AGTCGCACCTCTTTGTTTTGCGTCAATCCCAGAATCTGAAAGCACGGGCC
TTGAGCGCTCAACTAAAGATAACATCGGGTCAGGGGTCAAGCCCGCTCTA
CCCTTGGAGGTCCCACCGGCGTCGCTACTCTCCACCATCATTTCAGCGTT
TAAGTAGTCACAGGGAGTGGAGATGATGACAACAACACAATTTTGCTCTT
GTGAAGTACTATGAATGCGAATGTAGGAAGACGAAGAAGCGTAAAGATCG
AACCTGTCCTGTAGATTTAAGAAGAGATGATGGGACAGGAGCGCTCAAGA
TGCTTATAGACCACTGACTACATTATTTATAACCTACAAAACTTTGAGGG
CTTATAATAGTGTAAAGCCTTTTTATTTTATCACCACCGCGATGACCTGA
AGGGAAAATGAGAAATGTCCTCTGATAATGATACATATTCAATTGAACAA
ATCAATAAAATGTAGTGAAGGCTCA back to topprotein sequence of NO01G02490.1 >NO01G02490.1-protein ID=NO01G02490.1-protein|Name=NO01G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=680bp
MASAAALAYLPASGDDSWPWALLGLTPIQALELLLPCLFICWLFCEALFY
IVMLLVHRRLDVLTLPERSKHDPEEYVHKVMDIVDSVRGVYPFETFLTRW
CGSATLGELKRGNIAQFLAWALLSESVESLLPKDFTMIMRMVDMVDTRFE
LHLEHGLNTDVRTLRMTLEPLEVIHRPLCVYLCVTYVPRFFGNCVLRLQG
FERLNYEGTVYWYRPSQDWPKTARQLPLIFFHGVSPGQCAYAGLTTLLSE
GRSAVLVEIPHIAMSLEAFQAKSEKEVTTAVKAICSKHQIQHFMVAGHSY
GTIWAGWVLRAMREEVKQAVLLDPVCILLCLPNTPFNFLYRLPHDPPSHL
PKAPSIFTAAGIKKRVLDYGLHYVVSRELTIANAMRRQFWWHKKILHAEE
IHCPIVVGLASDDILLSAPAIRKYLQDNCTDLEIIWWQDFSHGEILTSLP
CQHNLDQTIRAQEEKYYHGRLTRPIWEYPDDEVPPSNHLEAKRSKSRMRL
LQESSTGGGDINSNTPSRRSPSKLVTPLSPASSSSASSCSTSDSNCQRRK
QRWPQACEDTSDCNFTYSCSRATTPTTPTEPRLASLRTGAGRLENLPSAE
QRRRWQKQQDREREQAAAEAEEEARCHPVAPLCFASIPESESTGLERSTK
DNIGSGVKPALPLEVPPASLLSTIISAFK* back to topmRNA from alignment at chr1:647613..650493- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02490.1 ID=NO01G02490.1|Name=NO01G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2881bp|location=Sequence derived from alignment at chr1:647613..650493- (Nannochloropsis oceanica)
TGATGGGCGGCCGTTTCGGCAGGAAGTCACGATTCAAATTGCCGTGTCCA
AATAAATGGACATCATCACCCGTACACCACGCTAGCACTACGATCAAATC
CATCCACACATCATAAAGGCACACACGATATCCACCATCCTAGAGACTGG
GTCCACGGCCTCCTTCTACTTTAGGTGTGGGCCATGAACGGCTCCAAAAG
AGAGCGAGAGATGATTCATTCCCAAGCGCCAAGGAAGACATTCATCGTGC
TGGGTTGTCGATTTGATATATCGAATTCTTCTCACACCATCCCCACACAT
ACTATCACATTTTTCATAGCGTCTTTGAGCGCCGGAGGCTCTTGTCATTT
CGCGCGGCTTTTGCCGGATGGCGTCTGCCGCGGCGTTGGCGTACCTACCA
GCCTCGGGCGACGACTCTTGGCCATGGGCACTGCTTGGCTTGACACCAAT
ACAGGCGCTCGAGCTGCTATTGCCCTGTCTCTTCATATGCTGGCTTTTTT
GCGAGGCCCTCTTTTACATTGTGATGCTCCTGGTGCATCGCCGCTTGGAC
GTGCTCACTTTGCCCGAACGGTATGTTTGGGTTGGAGAGAGCCATGGCTT
CATTTCTTCTTACCATTCAATGCACCAAGTATATCGTGCCACGTGGAGTC
AATTCTTACATTGTCTGTCCTTTTTTTTGCTCAGTTTTGTTTCACTTATA
ACATTCTTCCCCTCCACTCCGAGTAGAAGCAAGCATGACCCTGAAGAGTA
CGTGCACAAGGTGATGGACATCGTGGATAGCGTGCGAGGTGTCTACCCGT
TTGAGACTTTCCTAACGCGGTGGTGTGGTTCCGCGACCCTTGGTGAGCTC
AAAAGGGGCAATATCGCACAGTTTCTGGCCTGGGCATTGCTCTCCGAGAG
TGTGGAAAGCCTCCTCCCCAAAGACTTTACGATGATCATGCGCATGGTCG
ACATGGTGGACACACGCTTCGAGCTCCACCTCGAGCACGGCCTCAATACG
GACGTACGGACTTTAAGGATGACACTGGAGCCTCTTGAGGTCATCCATCG
CCCGCTTTGCGTCTACTTGTGCGTCACTTATGTCCCACGCTTTTTTGGCA
ATTGCGTGCTCCGTCTACAGGGCTTTGAGCGTCTCAACTATGAAGGCACC
GTCTACTGGTACCGCCCAAGCCAGGATTGGCCCAAGACAGCTCGGCAACT
ACCGTTGATCTTTTTCCATGGCGTTAGTCCTGGACAGTGCGCTTACGCCG
GCTTAACCACCTTGTTGAGTGAAGGACGTTCAGCGGTGCTTGTTGAAATC
CCGCACATCGCCATGTCGCTGGAGGCCTTCCAGGCTAAGTCTGAGAAGGA
AGTCACAACGGCTGTGAAGGCTATTTGTTCGAAGCATCAAATCCAACATT
TTATGGTGGCTGGGCACAGCTACGGGACCATTTGGGCAGGGTGGGTGCTT
CGGGCTATGCGAGAAGAGGTGAAGCAAGCCGTGCTCCTCGACCCAGTCTG
CATCCTCCTCTGCCTTCCCAACACACCTTTCAACTTCCTCTACCGTCTGC
CCCACGATCCACCTTCTCACCTCCCAAAAGCGCCCAGCATTTTCACGGCC
GCGGGGATCAAAAAGCGCGTCCTGGATTATGGCCTCCATTACGTTGTGTC
CCGCGAACTGACCATCGCCAATGCCATGCGACGGCAATTCTGGTGGCACA
AGAAGATTCTACACGCCGAGGAAATCCACTGCCCCATAGTGGTGGGCCTC
GCGAGCGATGATATCTTGCTGTCGGCCCCGGCCATCCGCAAGTACTTGCA
GGATAACTGCACGGACCTCGAAATTATCTGGTGGCAAGATTTCTCCCACG
GAGAGATCCTGACCTCCCTCCCTTGCCAGCACAACCTGGACCAAACCATT
CGCGCACAGGAGGAGAAGTACTACCATGGTCGCCTTACACGGCCTATTTG
GGAATATCCTGACGATGAGGTTCCTCCTTCGAACCATTTAGAGGCAAAAC
GCTCCAAGTCCAGGATGCGCTTGTTACAAGAGAGCAGTACTGGTGGGGGC
GACATCAACAGCAACACTCCCTCACGAAGGTCTCCTAGCAAGCTTGTAAC
TCCTCTATCCCCCGCCTCATCATCATCTGCTTCATCCTGCAGCACGAGTG
ACTCTAATTGTCAGAGACGGAAACAGCGGTGGCCGCAAGCCTGTGAGGAT
ACCTCTGATTGCAATTTTACATATTCTTGCTCGAGGGCTACCACTCCCAC
CACCCCTACCGAACCGCGGCTTGCTTCTTTGAGGACAGGCGCTGGACGAC
TCGAGAACTTACCCTCAGCCGAGCAGCGTCGCCGTTGGCAGAAGCAGCAG
GACCGAGAACGGGAGCAAGCGGCGGCTGAAGCAGAGGAGGAAGCACGATG
TCATCCAGTCGCACCTCTTTGTTTTGCGTCAATCCCAGAATCTGAAAGCA
CGGGCCTTGAGCGCTCAACTAAAGATAACATCGGGTCAGGGGTCAAGCCC
GCTCTACCCTTGGAGGTCCCACCGGCGTCGCTACTCTCCACCATCATTTC
AGCGTTTAAGTAGTCACAGGGAGTGGAGATGATGACAACAACACAATTTT
GCTCTTGTGAAGTACTATGAATGCGAATGTAGGAAGACGAAGAAGCGTAA
AGATCGAACCTGTCCTGTAGATTTAAGAAGAGATGATGGGACAGGAGCGC
TCAAGATGCTTATAGACCACTGACTACATTATTTATAACCTACAAAACTT
TGAGGGCTTATAATAGTGTAAAGCCTTTTTATTTTATCACCACCGCGATG
ACCTGAAGGGAAAATGAGAAATGTCCTCTGATAATGATACATATTCAATT
GAACAAATCAATAAAATGTAGTGAAGGCTCA back to topCoding sequence (CDS) from alignment at chr1:647613..650493- >NO01G02490.1 ID=NO01G02490.1|Name=NO01G02490.1|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at chr1:647613..650493- (Nannochloropsis oceanica)
ATGGCGTCTGCCGCGGCGTTGGCGTACCTACCAGCCTCGGGCGACGACTC
TTGGCCATGGGCACTGCTTGGCTTGACACCAATACAGGCGCTCGAGCTGC
TATTGCCCTGTCTCTTCATATGCTGGCTTTTTTGCGAGGCCCTCTTTTAC
ATTGTGATGCTCCTGGTGCATCGCCGCTTGGACGTGCTCACTTTGCCCGA
ACGAAGCAAGCATGACCCTGAAGAGTACGTGCACAAGGTGATGGACATCG
TGGATAGCGTGCGAGGTGTCTACCCGTTTGAGACTTTCCTAACGCGGTGG
TGTGGTTCCGCGACCCTTGGTGAGCTCAAAAGGGGCAATATCGCACAGTT
TCTGGCCTGGGCATTGCTCTCCGAGAGTGTGGAAAGCCTCCTCCCCAAAG
ACTTTACGATGATCATGCGCATGGTCGACATGGTGGACACACGCTTCGAG
CTCCACCTCGAGCACGGCCTCAATACGGACGTACGGACTTTAAGGATGAC
ACTGGAGCCTCTTGAGGTCATCCATCGCCCGCTTTGCGTCTACTTGTGCG
TCACTTATGTCCCACGCTTTTTTGGCAATTGCGTGCTCCGTCTACAGGGC
TTTGAGCGTCTCAACTATGAAGGCACCGTCTACTGGTACCGCCCAAGCCA
GGATTGGCCCAAGACAGCTCGGCAACTACCGTTGATCTTTTTCCATGGCG
TTAGTCCTGGACAGTGCGCTTACGCCGGCTTAACCACCTTGTTGAGTGAA
GGACGTTCAGCGGTGCTTGTTGAAATCCCGCACATCGCCATGTCGCTGGA
GGCCTTCCAGGCTAAGTCTGAGAAGGAAGTCACAACGGCTGTGAAGGCTA
TTTGTTCGAAGCATCAAATCCAACATTTTATGGTGGCTGGGCACAGCTAC
GGGACCATTTGGGCAGGGTGGGTGCTTCGGGCTATGCGAGAAGAGGTGAA
GCAAGCCGTGCTCCTCGACCCAGTCTGCATCCTCCTCTGCCTTCCCAACA
CACCTTTCAACTTCCTCTACCGTCTGCCCCACGATCCACCTTCTCACCTC
CCAAAAGCGCCCAGCATTTTCACGGCCGCGGGGATCAAAAAGCGCGTCCT
GGATTATGGCCTCCATTACGTTGTGTCCCGCGAACTGACCATCGCCAATG
CCATGCGACGGCAATTCTGGTGGCACAAGAAGATTCTACACGCCGAGGAA
ATCCACTGCCCCATAGTGGTGGGCCTCGCGAGCGATGATATCTTGCTGTC
GGCCCCGGCCATCCGCAAGTACTTGCAGGATAACTGCACGGACCTCGAAA
TTATCTGGTGGCAAGATTTCTCCCACGGAGAGATCCTGACCTCCCTCCCT
TGCCAGCACAACCTGGACCAAACCATTCGCGCACAGGAGGAGAAGTACTA
CCATGGTCGCCTTACACGGCCTATTTGGGAATATCCTGACGATGAGGTTC
CTCCTTCGAACCATTTAGAGGCAAAACGCTCCAAGTCCAGGATGCGCTTG
TTACAAGAGAGCAGTACTGGTGGGGGCGACATCAACAGCAACACTCCCTC
ACGAAGGTCTCCTAGCAAGCTTGTAACTCCTCTATCCCCCGCCTCATCAT
CATCTGCTTCATCCTGCAGCACGAGTGACTCTAATTGTCAGAGACGGAAA
CAGCGGTGGCCGCAAGCCTGTGAGGATACCTCTGATTGCAATTTTACATA
TTCTTGCTCGAGGGCTACCACTCCCACCACCCCTACCGAACCGCGGCTTG
CTTCTTTGAGGACAGGCGCTGGACGACTCGAGAACTTACCCTCAGCCGAG
CAGCGTCGCCGTTGGCAGAAGCAGCAGGACCGAGAACGGGAGCAAGCGGC
GGCTGAAGCAGAGGAGGAAGCACGATGTCATCCAGTCGCACCTCTTTGTT
TTGCGTCAATCCCAGAATCTGAAAGCACGGGCCTTGAGCGCTCAACTAAA
GATAACATCGGGTCAGGGGTCAAGCCCGCTCTACCCTTGGAGGTCCCACC
GGCGTCGCTACTCTCCACCATCATTTCAGCGTTTAAGTAG back to top
|