NO01G02460.1, NO01G02460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02460.1
Unique NameNO01G02460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1712
Alignment locationchr1:639723..642159 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:639723..642159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G02460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02460NO01G02460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02460.1NO01G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02460.1.cds1NO01G02460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02460.1.cds2NO01G02460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02460.1.cds3NO01G02460.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02460.1.cds4NO01G02460.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02460.1 ID=NO01G02460.1|Name=NO01G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1712bp
ATGTTGGACAACAGCTCCTACACTACCATGATGGTAGATTCCCAGCTGAT
TCCCCCGCGCGTCAGCCTGGAGGTGAACGACAGTATCGTGGCCACACCAA
AGGGACAGGAGGGCGCCGAGGCAGGCGTGCGTGGCACGCGGCTACAAAGG
TACACCTCGATTGCGGGCAGCGTCTCAACCCAATTGCGAGAAGGGCAGAA
GGAGAAGGAGGTGAAGGAGGAGAAGGAGGTGGTGGAGGAGGAGGAGGAGG
AGGAGGAGGTGGTGGAGGAGGAGGAGGTGGTGGAGGAGGAGGAGGTGGTG
GAGGAGGAGGAGGTGGTGGAGGAGGAGGAGGTGGTGGAGGAGGAGGAGAA
GAAGGGGGAGGAGGCGGAGCAGGAGAAGAAGGGGAGGAAGAAGAAGACGA
ACAAGGAGAAGAAGGAGGAGAGGAAGAGGTAAAAGAGGAAGAAGAATAAG
AGGAAGAGGAAGAAGAGGAAGAGGAAGAGGAAGAAGAGGAAGGAGAAGAA
GAAAAAGAAGAGGAAGAAGAAGAAGAAGAGGAGGCGGAGGCGGAGGAGGA
CGAGGACGAGGAAGAGGAGGTCACGGGCGAGCCATCTGAGGACTGTACTG
GTGTGACACCTGTGAACAGTTCGTGTCCCGTGACGGCAATGGGGCACGTA
GTATTCTGTGGGTGTACAGGAGTATGGTCCGTGGGGAAGCTCGTCCCCAT
GATCTTCGGTTTGGTCAACCGCGGCAGGATATGCGGACACTCTATGTGTA
GCCTTCCTCGCTGACCTCCTCTTTTATCCTCCTTCCCCTTCTCCTCCTGG
CCCTGTGTGGGCCGTCCGGGGACTTTGCCAGGTCAAAAAAACTGTCAAAG
TCGCTAGAAAGACTCGGACGAGGAATAGGGGATGACAACAATTTCTTGTT
GGAAGGCTCCCCCTCGTATGCAAGTCCTCGAAGACGTCAGGTTGCATGCG
ATAGTTCTAGAGAGATGTAGGAGCGCTCGAAAGAACTATCCAGGCCGACA
CTCTATTCTATTGTCTATTGCTATTGTGGAGAGAAACACACTGTCATGGA
CAGGGCGCTCAGATATTATGCACTTAATCCCGCGACAAAAAAACCTCCTG
CCTCGACTTCTTGGAGCTTTCGTCCACATGATCAAGCATTGCATTTGCAC
CATGCCAACGCCCCTGCATCTGGTCATATTCCTCTTCGTCCTGCACGTAG
TGATGTCTCTGTCGCCTGCGATCTGTGCCTTCGAGTCTTCGGCTGCAACC
ACCATCCGCAGGTGAGTGACTAGCTGGATGGTGGGGGAGGATTCGTCGTT
CGACAAGAAGTACATATAGCAAGCAACCTTACGCCGTTACCGGACTTGAA
CAGTTTGTTCACTTGCACCGCCATTTCCCTGCGGTCAGCTAGCGGCTTGC
TGCGCCCCAGGGGAAGAGGGAGAGGCGACAGCTTGCCACGATTGCTGGGT
CGGTCTTCTACCTTTGCGTGCCTCCTATACCCACCTATGCCATGGGGGTC
TGATCTAATTTTATCATGGTGCTGCACCTGTATTTTTCTTAGGACAGACG
CCTTCCACATGCATCTCTAGCATGGTAGTTAGACGGCCATCACATCAGCC
TGGGCCCATGTGAGTCGTGGATTAGCACTTGAGAACCTCCCTTAAGGTGA
GAAAGTATATGCCTTGCTTAGTAGGCACGCCATTGAGCGGAAGAAAAACG
ATAATCTTCCTT
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protein sequence of NO01G02460.1

>NO01G02460.1-protein ID=NO01G02460.1-protein|Name=NO01G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MLDNSSYTTMMVDSQLIPPRVSLEVNDSIVATPKGQEGAEAGVRGTRLQR
YTSIAGSVSTQLREGQKEKEVKEEKEVVEEEEEEEEVVEEEEVVEEEEVV
EEEEVVEEEEVVEEEEKKGEEAEQEKKGRKKKTNKEKKEERKR*
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mRNA from alignment at chr1:639723..642159-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02460.1 ID=NO01G02460.1|Name=NO01G02460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2437bp|location=Sequence derived from alignment at chr1:639723..642159- (Nannochloropsis oceanica)
ATGTTGGACAACAGCTCCTACACTACCATGATGGTAGATTCCCAGGTGCA
GTAGAATGTTTTCCCCTCCTCCCAAGAACCGAGGCAAGCGTGCGTGGCAC
ATGGCTGTTTTGTTTACTGCCGCCGCACCCACCTACCCCCCCCCCCTCCG
TTCCCTCCTTCCTACCCACCCATGCGCCACACACCACACACCCACAGCTG
ATTCCCCCGCGCGTCAGCCTGGAGGTGAACGACAGTATCGTGGCCACACC
AAAGGGACAGGAGGGCGCCGAGGCAGGCGTGCGTGGCACGCGGCTGTTTT
GTTTACTGCCGCCGCACCCACCTATTCTCCCCCCCCCTCCGTTCCCTCCT
TTCTACCCACCCATTCACCGCGACTGCAACTTACATTTTGCCATTGTGCC
AAGGACAACACCACAACCTCCATTAGAGCCGTCACAATTCCTCTCTATTT
CATCCCCTCCCCCCCCCCCCCCTCCTCAAACCACAGACAAAGGTACACCT
CGATTGCGGGCAGCGTCTCAACCCAATTGCGAGAAGGGCAGAAGGAGAAG
GAGGTGAAGGAGGAGAAGGAGGTGGTGGAGGAGGAGGAGGAGGAGGAGGA
GGTGGTGGAGGAGGAGGAGGTGGTGGAGGAGGAGGAGGAGAAGGGGGAGG
AGGATGAGGTGGAGGAGGAGGAGGTGGTGGAGGAGGAGGAGGTGGTGGAG
GAGGAGGAGGTGGTGGAGGAGGAGGAGAAGAAGGGGGAGGAGGCGGAGCA
GGAGAAGAAGGGGAGGAAGAAGAAGACGAACAAGGAGAAGAAGGAGGAGA
GGAAGAGGTAAAAGAGGAAGAAGAATAAGAGGAAGAGGAAGAAGAGGAAG
AGGAAGAGGAAGAAGAGGAAGGAGAAGAAGAAAAAGAAGAGGAAGAAGAA
GAAGAAGAGGAGGCGGAGGCGGAGGAGGACGAGGACGAGGAAGAGGAGGT
CACGGGCGAGCCATCTGAGGACTGTACTGGTGTGACACCTGTGAACAGTT
CGTGTCCCGTGACGGCAATGGGGCACGTAGTATTCTGTGGGTGTACAGGA
GTATGGTCCGTGGGGAAGCTCGTCCCCATGATCTTCGGTTTGGTCAACCG
CGGCAGGATATGCGGACACTCTATGTGTAGCCTTCCTCGCTGACCTCCTC
TTTTATCCTCCTTCCCCTTCTCCTCCTGGCCCTGTGTGGGCCGTCCGGGG
ACTTTGCCAGGTCAAAAAAACTGTCAAAGTCGCTAGAAAGACTCGGACGA
GGAATAGGGGATGACAACAATTTCTTGTTGGAAGGCTCCCCCTCGTATGC
AAGTCCTCGAAGACGTCAGGTTGCATGCGATAGTTCTAGAGAGATGTAGG
AGCGCTCGAAAGAACTATCCAGGCCGACACTCTATTCTATTGTCTATTGC
TATTGTGGAGAGAAACACACTGTCATGGACAGGGCGCTCAGATATTATGC
ACTTAATCCCGCGACAAAAAAACCTCCTGCCTCGACTTCTTGGAGCTTTC
GTCCACATGATCAAGCATTGCATTTGCACCATGCCAACGCCCCTGCATCT
GGTCATATTCCTCTTCGTCCTGCACGTAGTGATGTCTCTGTCGCCTGCGA
TCTGTGCCTTCGAGTCTTCGGCTGCAACCACCATCCGCAGGTGAGTGACT
AGCTGGATGGTGGGGGAGGATTCGTCGTTCGACAAGAAGTACATATAGCA
AGCAACCTTACGCCGTTACCGGACTTGAACAGTTTGTTCACTTGCACCGC
CATTTCCCTGCGGTCAGCTAGCGGCTTGCTGCGCCCCAGGGGAAGAGGGA
GAGGCGACAGCTTGCCACGATTGCTGGGTCGGTCTTCTACCTTTGCGTGC
CTCCTATACCCACCTATGCCATGGGGGTCTGATCTAATTTTATCATGGTG
CTGCACCTGTATTTTTCTTAGGACAGACGCCTTCCACATGCATCTCTAGC
ATGGTAGGTGGGTGTATGTAGTCTCTGCTGTTTTCCTCTACCCACCTCCT
CTTCGCGTGTTACCAATTCTCCCCCACGCCCGAGACAAACAACCCATTCC
TTGGCACAAGCTTTGTCTACACAGCAATAGACACAAAACTTCTTGACTGG
AATGGGTAAGAACGAAATTAGATTCCTTTCAATAACAAACCACATGGAAG
CTAATCCCTCTTCCTTGCGGCGGTCGGAAGGATAAATTCTTTTTCTAGAG
ATGAGCTCGCGTTCATACTTGCCCGACACCCGATTCGTTCACTTTTCCGT
TATTATGGTAACCTTGATGTTAACAATATTTCTCCAACCCAAAAAAAAGG
TAGTTAGACGGCCATCACATCAGCCTGGGCCCATGTGAGTCGTGGATTAG
CACTTGAGAACCTCCCTTAAGGTGAGAAAGTATATGCCTTGCTTAGTAGG
CACGCCATTGAGCGGAAGAAAAACGATAATCTTCCTT
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Coding sequence (CDS) from alignment at chr1:639723..642159-

>NO01G02460.1 ID=NO01G02460.1|Name=NO01G02460.1|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at chr1:639723..642159- (Nannochloropsis oceanica)
ATGTTGGACAACAGCTCCTACACTACCATGATGGTAGATTCCCAGCTGAT
TCCCCCGCGCGTCAGCCTGGAGGTGAACGACAGTATCGTGGCCACACCAA
AGGGACAGGAGGGCGCCGAGGCAGGCGTGCGTGGCACGCGGCTACAAAGG
TACACCTCGATTGCGGGCAGCGTCTCAACCCAATTGCGAGAAGGGCAGAA
GGAGAAGGAGGTGAAGGAGGAGAAGGAGGTGGTGGAGGAGGAGGAGGAGG
AGGAGGAGGTGGTGGAGGAGGAGGAGGTGGTGGAGGAGGAGGAGGTGGTG
GAGGAGGAGGAGGTGGTGGAGGAGGAGGAGGTGGTGGAGGAGGAGGAGAA
GAAGGGGGAGGAGGCGGAGCAGGAGAAGAAGGGGAGGAAGAAGAAGACGA
ACAAGGAGAAGAAGGAGGAGAGGAAGAGGTAA
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Synonyms
Publications