NO01G02380.1, NO01G02380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02380.1
Unique NameNO01G02380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length300
Alignment locationchr1:615328..615743 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:615328..615743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02380.1 vs.
Match: EWM29219.1 (hypothetical protein Naga_100007g87 [Nannochloropsis gaditana])

HSP 1 Score: 144.8 bits (364), Expect = 1.400e-31
Identity = 68/96 (70.83%), Postives = 80/96 (83.33%), Query Frame = 0 
Query:    1 MTIESVSELQAAASLFGSVCVDSNLAFYEQKKKDPHPLACEAASKDVKACWESLRAKIKATSEGPFQSYAQCLQTTGNNLKKCAELHDQLVKAFEE 97
            M IES +ELQA++SLFG  CVD+NLAFYEQKKK+P P ACEAA KDV ACWE+LRAKIKA SE  FQ+YA+CL+ TGNNLKKCA LH+ L+K+  E
Sbjct:    1 MPIESAAELQASSSLFGKECVDANLAFYEQKKKNPDPQACEAAGKDVLACWETLRAKIKAKSEASFQAYAECLEMTGNNLKKCANLHEDLLKSVSE 96
The following BLAST results are available for this feature:
BLAST of NO01G02380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29219.11.400e-3170.83hypothetical protein Naga_100007g87 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02380NO01G02380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02380.1NO01G02380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02380.1.cds1NO01G02380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02380.1.cds2NO01G02380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02380.1 ID=NO01G02380.1|Name=NO01G02380.1|organism=Nannochloropsis oceanica|type=mRNA|length=300bp
ATGACGATAGAGAGTGTGTCAGAGCTGCAGGCGGCGGCGTCGCTCTTCGG
GAGCGTGTGCGTAGACTCCAACTTGGCTTTTTACGAGCAGAAGAAGAAAG
ACCCCCACCCGTTGGCGTGCGAGGCGGCCAGCAAGGACGTCAAGGCTTGT
TGGGAGTCCTTGAGAGCGAAGATCAAAGCCACGTCCGAAGGGCCTTTCCA
GTCCTACGCCCAGTGTCTGCAGACAACCGGGAACAACCTCAAGAAATGTG
CTGAATTGCACGACCAGCTTGTGAAAGCCTTTGAAGAGGCCACGCAGTGA
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protein sequence of NO01G02380.1

>NO01G02380.1-protein ID=NO01G02380.1-protein|Name=NO01G02380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MTIESVSELQAAASLFGSVCVDSNLAFYEQKKKDPHPLACEAASKDVKAC
WESLRAKIKATSEGPFQSYAQCLQTTGNNLKKCAELHDQLVKAFEEATQ*
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mRNA from alignment at chr1:615328..615743+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02380.1 ID=NO01G02380.1|Name=NO01G02380.1|organism=Nannochloropsis oceanica|type=mRNA|length=416bp|location=Sequence derived from alignment at chr1:615328..615743+ (Nannochloropsis oceanica)
ATGACGATAGAGAGTGTGTCAGAGCTGCAGGCGGCGGCGTCGCTCTTCGG
GAGCGTGTGCGTAGACTCCAACTTGGCTTTTTACGAGCAGAAGAAGAAAG
ACCCCCACCCGTTGGCGTGCGAGGCGGCCAGCAAGGACGTCAAGGCTTGT
TGGGAGTCCTTGTAAGTATAGATGGTGTATCAAGATATGAAGGAAAGAGC
TTCTATCCCTCTTTATGATAATCTCTTCTACCACAGTAATATGTGACGTA
AATGCTCTTTTTCCCCCTTCTCGATAGGAGAGCGAAGATCAAAGCCACGT
CCGAAGGGCCTTTCCAGTCCTACGCCCAGTGTCTGCAGACAACCGGGAAC
AACCTCAAGAAATGTGCTGAATTGCACGACCAGCTTGTGAAAGCCTTTGA
AGAGGCCACGCAGTGA
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Coding sequence (CDS) from alignment at chr1:615328..615743+

>NO01G02380.1 ID=NO01G02380.1|Name=NO01G02380.1|organism=Nannochloropsis oceanica|type=CDS|length=300bp|location=Sequence derived from alignment at chr1:615328..615743+ (Nannochloropsis oceanica)
ATGACGATAGAGAGTGTGTCAGAGCTGCAGGCGGCGGCGTCGCTCTTCGG
GAGCGTGTGCGTAGACTCCAACTTGGCTTTTTACGAGCAGAAGAAGAAAG
ACCCCCACCCGTTGGCGTGCGAGGCGGCCAGCAAGGACGTCAAGGCTTGT
TGGGAGTCCTTGAGAGCGAAGATCAAAGCCACGTCCGAAGGGCCTTTCCA
GTCCTACGCCCAGTGTCTGCAGACAACCGGGAACAACCTCAAGAAATGTG
CTGAATTGCACGACCAGCTTGTGAAAGCCTTTGAAGAGGCCACGCAGTGA
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Synonyms
Publications