NO01G02350.1, NO01G02350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02350.1
Unique NameNO01G02350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1925
Alignment locationchr1:605561..607485 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:605561..607485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02350.1 vs.
Match: EWM29125.1 (hypothetical protein Naga_100007g89 [Nannochloropsis gaditana])

HSP 1 Score: 460.3 bits (1183), Expect = 8.100e-126
Identity = 277/531 (52.17%), Postives = 364/531 (68.55%), Query Frame = 0 
Query:    1 MQVQATSPGGPSNLLGGFKERLGSLECRRSSPSTPLSPPSTSSQEDQPPMRMCMPSQTGAAFPSQHKHHIQSPGQLKLQGGEEEDVKVGEEAAQSTVEELERGMVGEAQVMEELLRVRESFICKGWGELLGSLKAGKSLVILAREEERRAQLLKNKPQQQDGHLHALFQAAEGDIKVMVKAFLREHAQQELAQEELLRGKTKVEALLDTLKEAQIRLVKEEEIVAGQQGEQDEEEELVAEQECQEQVQQCEAALQAAKAQNDLAETRILEWQAKLNQLEALGVAEREVMEVDDLRSATAQDEIETLGEAARLRKQAETLCAVLDMLQGLYRVTVTVLDEAEAGPSDMVLRLAYPSKHALEMTLSMRGQAIQLLHARLEMPLMQQRRKSVATAEAQRLMMNQVDNLVTVAQGLPAPQDLLFLAREVGWMVASRGVAKQEIRELMKRYIVKHNEGMDELTVTFAEGVVASFSLLSGYPNMPGSVRIAGLVGVGGWKDCELAVTSRCLNGLGLDSLTALIDALHERIVELDKKA 532
            MQVQ  SP  P++++  ++++L S+E R  +     +P  +   ED+  +   + SQ G        HH +S   + L   + +  ++  EAA    E++E G+  E QV++ELL+ RE+F+C+ WG+LLG LKAGKSL +  R+EE R+   +NK QQ++  L  LF+ AEGDI  +V+A + +H +Q   ++E+L  K  VE LL+TL+  Q  L   EE ++     + +E+E   EQ+ Q Q++  EAA++  +A+N  A  R+ E Q+ L  L+   +A+ E         A  + E E L EA RLR  AE L  VL+ LQGLY V VTV+D ++A P +MVLR+ YPS+HALE+TLS   + +QLLHARLE+P++QQRR+S+AT+E QRLMMNQVDNLVTVAQGL  P DLLFLAREVGWMVASRGVAKQEIRELMKRYIVKHNE MDELTVT+AEGVVASF LL GYP MPGSVRI GLVGVGGWKD +LA+TSR LNGLGL+SLTAL+DALHERI E D KA
Sbjct:    1 MQVQTVSPS-PTSIVMDYRKQLNSIEARLMN-----APLHSGRSEDKSEL---LASQVG--------HHHESSLPITLPVSQTKSSRM--EAAVGASEDMECGITHEEQVVDELLQARETFMCQRWGDLLGQLKAGKSLGVTVRQEEERSYHFENKFQQEEHRLRGLFETAEGDIHGLVRATVEKHHEQARIRKEILERKKSVECLLNTLENIQGSLSLGEEALS-----KLDEDEKAEEQDGQNQIRVMEAAIEDIRAKNCDARKRVSELQSTLEVLQTAALADGEEAS-SRADPALVEQEAEVLAEAGRLRGHAEDLQKVLETLQGLYNVAVTVVDGSDAKPGEMVLRVGYPSQHALEVTLSTSDETVQLLHARLELPIVQQRRRSLATSEMQRLMMNQVDNLVTVAQGLTPPHDLLFLAREVGWMVASRGVAKQEIRELMKRYIVKHNEAMDELTVTYAEGVVASFLLLEGYPQMPGSVRIVGLVGVGGWKDTDLAITSRSLNGLGLESLTALVDALHERIAESDSKA 506
The following BLAST results are available for this feature:
BLAST of NO01G02350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29125.18.100e-12652.17hypothetical protein Naga_100007g89 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02350NO01G02350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02350.1NO01G02350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02350.1.cds1NO01G02350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02350.1 ID=NO01G02350.1|Name=NO01G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1925bp
ACAGATCTCACAGCCATGCAAGTGCAGGCAACCTCGCCAGGCGGACCTTC
CAACCTTCTCGGAGGGTTCAAGGAGAGATTGGGAAGCCTCGAGTGCCGCC
GGTCCTCCCCCTCGACCCCTTTATCTCCACCGTCAACATCGTCGCAAGAG
GACCAGCCCCCGATGCGCATGTGTATGCCCTCCCAGACCGGTGCTGCTTT
CCCTTCGCAGCACAAGCACCACATTCAGTCTCCGGGACAGCTCAAGCTGC
AGGGGGGGGAGGAGGAAGATGTGAAGGTGGGGGAGGAAGCAGCGCAGTCG
ACCGTGGAGGAGCTGGAGCGTGGCATGGTGGGCGAGGCGCAAGTGATGGA
GGAACTGCTACGGGTTCGTGAATCATTTATTTGCAAAGGATGGGGGGAGC
TGCTCGGAAGCCTCAAGGCAGGCAAGTCGCTGGTGATATTGGCGAGGGAA
GAGGAGAGGCGAGCCCAGCTGCTAAAAAACAAGCCGCAACAGCAGGACGG
CCACTTGCATGCTCTGTTTCAGGCTGCGGAGGGCGACATTAAAGTCATGG
TGAAAGCTTTTCTGCGGGAACATGCGCAGCAAGAGCTGGCTCAAGAGGAG
CTGCTGCGCGGGAAGACAAAGGTGGAAGCCTTGCTGGACACTTTGAAGGA
AGCGCAAATCCGCTTGGTCAAGGAGGAGGAAATTGTGGCGGGACAGCAGG
GCGAACAGGACGAGGAAGAGGAATTGGTCGCGGAGCAAGAGTGTCAAGAA
CAGGTACAGCAATGTGAGGCAGCACTGCAAGCGGCCAAGGCCCAGAACGA
CTTGGCGGAGACGCGTATCCTGGAATGGCAAGCCAAGCTGAACCAGCTTG
AGGCTCTGGGGGTGGCCGAACGAGAGGTGATGGAGGTGGACGACTTACGT
TCTGCCACGGCACAGGACGAGATCGAGACGCTCGGTGAGGCAGCGCGGCT
CCGCAAGCAGGCAGAGACGCTGTGCGCGGTGCTGGATATGTTACAAGGCC
TATACCGCGTGACGGTGACGGTGCTGGACGAAGCCGAGGCGGGGCCGAGC
GATATGGTCCTCCGGCTGGCATATCCCTCCAAGCACGCCCTAGAGATGAC
GCTTTCGATGAGGGGTCAAGCGATCCAGCTGCTGCATGCTCGTCTGGAGA
TGCCCCTCATGCAGCAACGGCGGAAGTCGGTGGCCACGGCTGAGGCGCAG
CGCCTGATGATGAATCAGGTGGACAACCTCGTAACAGTAGCGCAAGGCTT
GCCAGCACCCCAGGACCTTCTGTTCCTGGCGCGGGAGGTGGGCTGGATGG
TTGCTTCGCGGGGCGTTGCGAAACAGGAGATCCGCGAGCTTATGAAAAGG
TACATCGTCAAACACAACGAGGGCATGGATGAGCTGACGGTCACATTCGC
CGAGGGCGTTGTCGCCTCCTTCTCCCTTCTGTCCGGCTACCCTAATATGC
CGGGCAGTGTACGCATCGCGGGCTTGGTGGGCGTGGGCGGCTGGAAGGAC
TGCGAGCTGGCTGTCACGAGCCGCTGCTTGAATGGGCTGGGCTTGGACTC
ACTGACGGCCTTGATTGATGCCCTGCACGAGCGCATCGTGGAGCTGGACA
AGAAAGCTGAGTAAGAGAGCTGCGTGGGGATCAAGAAGAAGAAAGACACA
GAGAAGGATGGGAGTGGGTGAGGGAGAGTGCAGATAAAATGGTGTGGGGG
TTTATGATGGAATACTGTGTAGGAAAAAACGAGCAAGGAAAGGACCCGGA
ACAAGTTGAAGAAAAGAAAACTGAACAAATAATAAAAAACGAACAACTGT
GGGTGATTCTCAGAGGGCTGAGCGATTGGAAAGTGAATTGAGTGGCGTGC
GGGAGCAGTTTAGAGGGGGAAATAACAAATGAGCAACATATGACTGTGCC
AGAAACGTAGGACAAGGATTACAGA
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protein sequence of NO01G02350.1

>NO01G02350.1-protein ID=NO01G02350.1-protein|Name=NO01G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=533bp
MQVQATSPGGPSNLLGGFKERLGSLECRRSSPSTPLSPPSTSSQEDQPPM
RMCMPSQTGAAFPSQHKHHIQSPGQLKLQGGEEEDVKVGEEAAQSTVEEL
ERGMVGEAQVMEELLRVRESFICKGWGELLGSLKAGKSLVILAREEERRA
QLLKNKPQQQDGHLHALFQAAEGDIKVMVKAFLREHAQQELAQEELLRGK
TKVEALLDTLKEAQIRLVKEEEIVAGQQGEQDEEEELVAEQECQEQVQQC
EAALQAAKAQNDLAETRILEWQAKLNQLEALGVAEREVMEVDDLRSATAQ
DEIETLGEAARLRKQAETLCAVLDMLQGLYRVTVTVLDEAEAGPSDMVLR
LAYPSKHALEMTLSMRGQAIQLLHARLEMPLMQQRRKSVATAEAQRLMMN
QVDNLVTVAQGLPAPQDLLFLAREVGWMVASRGVAKQEIRELMKRYIVKH
NEGMDELTVTFAEGVVASFSLLSGYPNMPGSVRIAGLVGVGGWKDCELAV
TSRCLNGLGLDSLTALIDALHERIVELDKKAE*
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mRNA from alignment at chr1:605561..607485+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02350.1 ID=NO01G02350.1|Name=NO01G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1925bp|location=Sequence derived from alignment at chr1:605561..607485+ (Nannochloropsis oceanica)
ACAGATCTCACAGCCATGCAAGTGCAGGCAACCTCGCCAGGCGGACCTTC
CAACCTTCTCGGAGGGTTCAAGGAGAGATTGGGAAGCCTCGAGTGCCGCC
GGTCCTCCCCCTCGACCCCTTTATCTCCACCGTCAACATCGTCGCAAGAG
GACCAGCCCCCGATGCGCATGTGTATGCCCTCCCAGACCGGTGCTGCTTT
CCCTTCGCAGCACAAGCACCACATTCAGTCTCCGGGACAGCTCAAGCTGC
AGGGGGGGGAGGAGGAAGATGTGAAGGTGGGGGAGGAAGCAGCGCAGTCG
ACCGTGGAGGAGCTGGAGCGTGGCATGGTGGGCGAGGCGCAAGTGATGGA
GGAACTGCTACGGGTTCGTGAATCATTTATTTGCAAAGGATGGGGGGAGC
TGCTCGGAAGCCTCAAGGCAGGCAAGTCGCTGGTGATATTGGCGAGGGAA
GAGGAGAGGCGAGCCCAGCTGCTAAAAAACAAGCCGCAACAGCAGGACGG
CCACTTGCATGCTCTGTTTCAGGCTGCGGAGGGCGACATTAAAGTCATGG
TGAAAGCTTTTCTGCGGGAACATGCGCAGCAAGAGCTGGCTCAAGAGGAG
CTGCTGCGCGGGAAGACAAAGGTGGAAGCCTTGCTGGACACTTTGAAGGA
AGCGCAAATCCGCTTGGTCAAGGAGGAGGAAATTGTGGCGGGACAGCAGG
GCGAACAGGACGAGGAAGAGGAATTGGTCGCGGAGCAAGAGTGTCAAGAA
CAGGTACAGCAATGTGAGGCAGCACTGCAAGCGGCCAAGGCCCAGAACGA
CTTGGCGGAGACGCGTATCCTGGAATGGCAAGCCAAGCTGAACCAGCTTG
AGGCTCTGGGGGTGGCCGAACGAGAGGTGATGGAGGTGGACGACTTACGT
TCTGCCACGGCACAGGACGAGATCGAGACGCTCGGTGAGGCAGCGCGGCT
CCGCAAGCAGGCAGAGACGCTGTGCGCGGTGCTGGATATGTTACAAGGCC
TATACCGCGTGACGGTGACGGTGCTGGACGAAGCCGAGGCGGGGCCGAGC
GATATGGTCCTCCGGCTGGCATATCCCTCCAAGCACGCCCTAGAGATGAC
GCTTTCGATGAGGGGTCAAGCGATCCAGCTGCTGCATGCTCGTCTGGAGA
TGCCCCTCATGCAGCAACGGCGGAAGTCGGTGGCCACGGCTGAGGCGCAG
CGCCTGATGATGAATCAGGTGGACAACCTCGTAACAGTAGCGCAAGGCTT
GCCAGCACCCCAGGACCTTCTGTTCCTGGCGCGGGAGGTGGGCTGGATGG
TTGCTTCGCGGGGCGTTGCGAAACAGGAGATCCGCGAGCTTATGAAAAGG
TACATCGTCAAACACAACGAGGGCATGGATGAGCTGACGGTCACATTCGC
CGAGGGCGTTGTCGCCTCCTTCTCCCTTCTGTCCGGCTACCCTAATATGC
CGGGCAGTGTACGCATCGCGGGCTTGGTGGGCGTGGGCGGCTGGAAGGAC
TGCGAGCTGGCTGTCACGAGCCGCTGCTTGAATGGGCTGGGCTTGGACTC
ACTGACGGCCTTGATTGATGCCCTGCACGAGCGCATCGTGGAGCTGGACA
AGAAAGCTGAGTAAGAGAGCTGCGTGGGGATCAAGAAGAAGAAAGACACA
GAGAAGGATGGGAGTGGGTGAGGGAGAGTGCAGATAAAATGGTGTGGGGG
TTTATGATGGAATACTGTGTAGGAAAAAACGAGCAAGGAAAGGACCCGGA
ACAAGTTGAAGAAAAGAAAACTGAACAAATAATAAAAAACGAACAACTGT
GGGTGATTCTCAGAGGGCTGAGCGATTGGAAAGTGAATTGAGTGGCGTGC
GGGAGCAGTTTAGAGGGGGAAATAACAAATGAGCAACATATGACTGTGCC
AGAAACGTAGGACAAGGATTACAGA
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Coding sequence (CDS) from alignment at chr1:605561..607485+

>NO01G02350.1 ID=NO01G02350.1|Name=NO01G02350.1|organism=Nannochloropsis oceanica|type=CDS|length=1599bp|location=Sequence derived from alignment at chr1:605561..607485+ (Nannochloropsis oceanica)
ATGCAAGTGCAGGCAACCTCGCCAGGCGGACCTTCCAACCTTCTCGGAGG
GTTCAAGGAGAGATTGGGAAGCCTCGAGTGCCGCCGGTCCTCCCCCTCGA
CCCCTTTATCTCCACCGTCAACATCGTCGCAAGAGGACCAGCCCCCGATG
CGCATGTGTATGCCCTCCCAGACCGGTGCTGCTTTCCCTTCGCAGCACAA
GCACCACATTCAGTCTCCGGGACAGCTCAAGCTGCAGGGGGGGGAGGAGG
AAGATGTGAAGGTGGGGGAGGAAGCAGCGCAGTCGACCGTGGAGGAGCTG
GAGCGTGGCATGGTGGGCGAGGCGCAAGTGATGGAGGAACTGCTACGGGT
TCGTGAATCATTTATTTGCAAAGGATGGGGGGAGCTGCTCGGAAGCCTCA
AGGCAGGCAAGTCGCTGGTGATATTGGCGAGGGAAGAGGAGAGGCGAGCC
CAGCTGCTAAAAAACAAGCCGCAACAGCAGGACGGCCACTTGCATGCTCT
GTTTCAGGCTGCGGAGGGCGACATTAAAGTCATGGTGAAAGCTTTTCTGC
GGGAACATGCGCAGCAAGAGCTGGCTCAAGAGGAGCTGCTGCGCGGGAAG
ACAAAGGTGGAAGCCTTGCTGGACACTTTGAAGGAAGCGCAAATCCGCTT
GGTCAAGGAGGAGGAAATTGTGGCGGGACAGCAGGGCGAACAGGACGAGG
AAGAGGAATTGGTCGCGGAGCAAGAGTGTCAAGAACAGGTACAGCAATGT
GAGGCAGCACTGCAAGCGGCCAAGGCCCAGAACGACTTGGCGGAGACGCG
TATCCTGGAATGGCAAGCCAAGCTGAACCAGCTTGAGGCTCTGGGGGTGG
CCGAACGAGAGGTGATGGAGGTGGACGACTTACGTTCTGCCACGGCACAG
GACGAGATCGAGACGCTCGGTGAGGCAGCGCGGCTCCGCAAGCAGGCAGA
GACGCTGTGCGCGGTGCTGGATATGTTACAAGGCCTATACCGCGTGACGG
TGACGGTGCTGGACGAAGCCGAGGCGGGGCCGAGCGATATGGTCCTCCGG
CTGGCATATCCCTCCAAGCACGCCCTAGAGATGACGCTTTCGATGAGGGG
TCAAGCGATCCAGCTGCTGCATGCTCGTCTGGAGATGCCCCTCATGCAGC
AACGGCGGAAGTCGGTGGCCACGGCTGAGGCGCAGCGCCTGATGATGAAT
CAGGTGGACAACCTCGTAACAGTAGCGCAAGGCTTGCCAGCACCCCAGGA
CCTTCTGTTCCTGGCGCGGGAGGTGGGCTGGATGGTTGCTTCGCGGGGCG
TTGCGAAACAGGAGATCCGCGAGCTTATGAAAAGGTACATCGTCAAACAC
AACGAGGGCATGGATGAGCTGACGGTCACATTCGCCGAGGGCGTTGTCGC
CTCCTTCTCCCTTCTGTCCGGCTACCCTAATATGCCGGGCAGTGTACGCA
TCGCGGGCTTGGTGGGCGTGGGCGGCTGGAAGGACTGCGAGCTGGCTGTC
ACGAGCCGCTGCTTGAATGGGCTGGGCTTGGACTCACTGACGGCCTTGAT
TGATGCCCTGCACGAGCGCATCGTGGAGCTGGACAAGAAAGCTGAGTAA
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Synonyms
Publications