NO01G02340.1, NO01G02340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02340.1
Unique NameNO01G02340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1165
Alignment locationchr1:604367..605531 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:604367..605531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G02340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02340NO01G02340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02340.1NO01G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02340.1.cds1NO01G02340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02340.1 ID=NO01G02340.1|Name=NO01G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp
AGAGGATCGAGTGCAGAAAAGCTAAGGAATTCAATTTTTTGACTCTATGT
TCGAGCTGTAGCGAAGACGGCCACGCCAGCAAAGGTGATCAGTCAGCCAG
TTTAAGCCCAAGAGCCTCATTCCCAATACAGGGAAAAGGCTGACAAGTTT
CTGATCAGGATAGTCATCAGGATAGTCAGGAGAAAAGGTGCAAGGTAAAG
TGAGAAACTGTGGTTGCTGCATCTTGAGCTGCCAGCGGCTGCAGACCTCT
CCTCAACACTCACGGCGTCATCTTCAGAGAGGGAGTGTTACGCGCAAAGC
GCGTGTGCAGCCGCAATAGACCAAAACAGGCGCAAAACCAGCGCGGTTGG
ATTGAGTTCTTCCTGACAGCCAGTACCGCATTCCCTCCTGAGATCGCAGC
CTTTCACTTTGACTTTGACTTCCGAGGGGGAAAGGTAATGTATGTAATAA
GCAGCGACAGCAGTGTAATGACGGATCACAACACTCTAAATGCTACCAAT
TCCGCAGGGCCAAGAGATGAAGGGTTGGGACATGATGCACCGCGGCGTCC
TGCTGGGCATGGGCTCATTGACGGCCATCGCAACGTACCGCAGCTGGTGC
GAATACCAGAGGCGAATCGTTATTAATGAGCAAAAGGAGGCAGCCAGAAA
AAAAGTCCGGGCTGCTCAGCGCGCTGCTGCGCAGGCCGCGGCTGAGGCAC
AGGAGGAAGTCAGGAGTCTGAGAAAAAAACAAGCTGCACGGAGGCATCTC
AGCGGTGGAGGTGGTATAGAAGAATTGGGGGCAGGTAGTGAGTAAGGAAT
GGAGGATGTGACTTTTCAAGACTGAGGAGAGGATTTTTTAGTTGGTCGAT
TGAAATGCCTGATGGTGTGTGGGAGTAGAAGACGTTTTGGTCAGAGGGAA
GGACGGAGAAAGAAAGGAAAATGGAGAGGGTTAAGATGGGAAAGATGGGG
CTGCGTGGTTGCCGTCATGAAGGAACAAAACCAAGGGCTGTTGAGGAAAG
CACATAGACATACAGACAAATTTGTCAACAGACGTACACACTCCTATATC
AAGAAGGAAAAATACAAACATGTATGAAATGTTGCCTGAGGAAGAAAAGT
CAAAATATACATACGAATCTGAGGAGCGAAAAGAAGTAGGCAGCACCAGA
AAGCTTGTTGCCAGC
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protein sequence of NO01G02340.1

>NO01G02340.1-protein ID=NO01G02340.1-protein|Name=NO01G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MLPIPQGQEMKGWDMMHRGVLLGMGSLTAIATYRSWCEYQRRIVINEQKE
AARKKVRAAQRAAAQAAAEAQEEVRSLRKKQAARRHLSGGGGIEELGAGS
E*
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mRNA from alignment at chr1:604367..605531-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02340.1 ID=NO01G02340.1|Name=NO01G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp|location=Sequence derived from alignment at chr1:604367..605531- (Nannochloropsis oceanica)
AGAGGATCGAGTGCAGAAAAGCTAAGGAATTCAATTTTTTGACTCTATGT
TCGAGCTGTAGCGAAGACGGCCACGCCAGCAAAGGTGATCAGTCAGCCAG
TTTAAGCCCAAGAGCCTCATTCCCAATACAGGGAAAAGGCTGACAAGTTT
CTGATCAGGATAGTCATCAGGATAGTCAGGAGAAAAGGTGCAAGGTAAAG
TGAGAAACTGTGGTTGCTGCATCTTGAGCTGCCAGCGGCTGCAGACCTCT
CCTCAACACTCACGGCGTCATCTTCAGAGAGGGAGTGTTACGCGCAAAGC
GCGTGTGCAGCCGCAATAGACCAAAACAGGCGCAAAACCAGCGCGGTTGG
ATTGAGTTCTTCCTGACAGCCAGTACCGCATTCCCTCCTGAGATCGCAGC
CTTTCACTTTGACTTTGACTTCCGAGGGGGAAAGGTAATGTATGTAATAA
GCAGCGACAGCAGTGTAATGACGGATCACAACACTCTAAATGCTACCAAT
TCCGCAGGGCCAAGAGATGAAGGGTTGGGACATGATGCACCGCGGCGTCC
TGCTGGGCATGGGCTCATTGACGGCCATCGCAACGTACCGCAGCTGGTGC
GAATACCAGAGGCGAATCGTTATTAATGAGCAAAAGGAGGCAGCCAGAAA
AAAAGTCCGGGCTGCTCAGCGCGCTGCTGCGCAGGCCGCGGCTGAGGCAC
AGGAGGAAGTCAGGAGTCTGAGAAAAAAACAAGCTGCACGGAGGCATCTC
AGCGGTGGAGGTGGTATAGAAGAATTGGGGGCAGGTAGTGAGTAAGGAAT
GGAGGATGTGACTTTTCAAGACTGAGGAGAGGATTTTTTAGTTGGTCGAT
TGAAATGCCTGATGGTGTGTGGGAGTAGAAGACGTTTTGGTCAGAGGGAA
GGACGGAGAAAGAAAGGAAAATGGAGAGGGTTAAGATGGGAAAGATGGGG
CTGCGTGGTTGCCGTCATGAAGGAACAAAACCAAGGGCTGTTGAGGAAAG
CACATAGACATACAGACAAATTTGTCAACAGACGTACACACTCCTATATC
AAGAAGGAAAAATACAAACATGTATGAAATGTTGCCTGAGGAAGAAAAGT
CAAAATATACATACGAATCTGAGGAGCGAAAAGAAGTAGGCAGCACCAGA
AAGCTTGTTGCCAGC
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Coding sequence (CDS) from alignment at chr1:604367..605531-

>NO01G02340.1 ID=NO01G02340.1|Name=NO01G02340.1|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at chr1:604367..605531- (Nannochloropsis oceanica)
ATGCTACCAATTCCGCAGGGCCAAGAGATGAAGGGTTGGGACATGATGCA
CCGCGGCGTCCTGCTGGGCATGGGCTCATTGACGGCCATCGCAACGTACC
GCAGCTGGTGCGAATACCAGAGGCGAATCGTTATTAATGAGCAAAAGGAG
GCAGCCAGAAAAAAAGTCCGGGCTGCTCAGCGCGCTGCTGCGCAGGCCGC
GGCTGAGGCACAGGAGGAAGTCAGGAGTCTGAGAAAAAAACAAGCTGCAC
GGAGGCATCTCAGCGGTGGAGGTGGTATAGAAGAATTGGGGGCAGGTAGT
GAGTAA
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Synonyms
Publications