NO01G02050.1, NO01G02050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02050.1
Unique NameNO01G02050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2200
Alignment locationchr1:518533..521177 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:518533..521177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02050.1 vs.
Match: EWM29136.1 (Nonaspanin (TM9SF) [Nannochloropsis gaditana])

HSP 1 Score: 1111.3 bits (2873), Expect = 0.000e+0
Identity = 532/635 (83.78%), Postives = 588/635 (92.60%), Query Frame = 0 
Query:    1 MKASLVVFALGAAGTVQAGFYLPGVAPKSYELRENVPLKVNKVTSTKTQIPYEYYDIPFCLPPKRRGELENLGEVLAGDAITNSPYQLEMKVPKACVKLCAKFYSDKDMRMFRDLIDEEYRVHWLVDSLPAAVRNDRFNFISRGFPIGFVTPSTYTDPNVHCLYNHVRIIIKYNEDPALFKGSRIVGFEVVPFSVKHRWDNKGEATFNPETTVLDTCNDMNHVKYQSEGFQTVEAEGEVIFTYDVEWKESDVPWSHRWDVYFTGNPDDEIHYFSIVNSLMIVLFLTGVVAMIMLRTLRRDISNYNEMQTLEEAQEESGWKLVHGDVFRPPQTSPMLLAVLAGSGAQLLAMATATLTFALLGFMSPANRGGLLTSLLLLFVFMGSVAGYSSARLYKLFGGKDWRRNTILTATLFPGVMFAMFSVLNVVAMVENSSTAVPFVWVLCLLVLWLGVSSPLVFVGSYFGFKKDALEVPVRTNQIARHVPEQMWYTRPLFSIALGGILPFGAVCIELFFIMSALWLHQIYYVFGFLMCVFFILVATCAEITIVMTYFQLCNEDYRWWWRSFLSSGSAAMYLFVYSIWYFESKLHIDAAVSIFIYFTYMGMISMAFSLMTGAIGLFSCLWFTRKIYGAIKVD 636
            M+ S++VF   A GT QAGFYLPGVAPKSY+ RENVPLKVNKVTSTKTQIPYEYYDIPFC PPKRRGE+ENLGEVLAGDAITNSPYQLEMKVPK+CVKLCAK Y++K+M++FR+LID+ YRVHW++DSLPAAVRND++NF+SRGFPIGF+TP  Y +PNVHCL+NHVR+++ YNE+PA FKGSRIVGFEV+PFSVKH+WD+K +A F+ E TVL+TCND   V ++ + FQTVE EGEVIFTYDVEWKESDVPWS RWDVYF+GNPDDEIHYFSIVNSLMI LFLTGVVAMIMLRTLR+DISNYNEMQTLEEAQEESGWKLVHGDVFRPPQTSPMLLAVLAGSGAQLLAM+TA LTFALLGFMSPANRGGLLTSLLLLFVFMGSVAGYSSARLYKLFGGKDWRRNTILTAT+FPGV+F MFS+LNVVAM+ENSSTAVPFVWVLCLLVLWLGVSSPLVFVGSYFGFK++ L +P RTNQIARH+PE+ W+  PL  IA+GGILPFGAVCIELFFIMSALWLHQIYYVFGFL+CVFFI+  TCAEI IV+TYFQLCNEDY+WWWRSF +SGS A+YLF+YSIWYF SKL IDAAVSIFIYFTYMGMISMAF LMTGAIGLF+CLWFTR IYGAIKVD
Sbjct:    1 MRISVLVFLFSAVGTAQAGFYLPGVAPKSYDARENVPLKVNKVTSTKTQIPYEYYDIPFCRPPKRRGEMENLGEVLAGDAITNSPYQLEMKVPKSCVKLCAKSYTEKEMKLFRELIDDNYRVHWILDSLPAAVRNDKYNFVSRGFPIGFITPPNYNNPNVHCLFNHVRLVVLYNENPAHFKGSRIVGFEVIPFSVKHKWDSKNKAVFDTEKTVLETCNDQRQVSHEVDAFQTVEGEGEVIFTYDVEWKESDVPWSSRWDVYFSGNPDDEIHYFSIVNSLMIALFLTGVVAMIMLRTLRQDISNYNEMQTLEEAQEESGWKLVHGDVFRPPQTSPMLLAVLAGSGAQLLAMSTAILTFALLGFMSPANRGGLLTSLLLLFVFMGSVAGYSSARLYKLFGGKDWRRNTILTATVFPGVIFVMFSILNVVAMLENSSTAVPFVWVLCLLVLWLGVSSPLVFVGSYFGFKREVLGMPTRTNQIARHIPERQWWGHPLLCIAVGGILPFGAVCIELFFIMSALWLHQIYYVFGFLICVFFIMGITCAEIAIVLTYFQLCNEDYQWWWRSFFTSGSTAVYLFIYSIWYFASKLQIDAAVSIFIYFTYMGMISMAFFLMTGAIGLFACLWFTRTIYGAIKVD 635
The following BLAST results are available for this feature:
BLAST of NO01G02050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29136.10.000e+083.78Nonaspanin (TM9SF) [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02050NO01G02050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02050.1NO01G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02050.1.cds1NO01G02050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02050.1.cds2NO01G02050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02050.1.cds3NO01G02050.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02050.1 ID=NO01G02050.1|Name=NO01G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2200bp
AACAGGCCCTGAGTTGTTTCGTGCGCCTTTTGTCTAGCCGCGCAAATTGG
TCTACTCTGTCCCATCTGCCCATATTCTCAAGCTGCCTGTGAACTAATAT
GAAGGCCAGCCTCGTGGTCTTCGCCCTTGGTGCCGCCGGCACGGTCCAAG
CTGGCTTTTACTTGCCTGGTGTGGCACCCAAAAGTTACGAGTTGAGAGAA
AATGTGCCTCTCAAGGTGAACAAAGTCACCTCAACCAAAACTCAAATCCC
GTACGAATACTACGACATTCCCTTCTGTCTCCCACCGAAGCGTCGGGGAG
AACTGGAGAACCTGGGAGAGGTCCTGGCAGGGGACGCTATTACCAACAGC
CCGTACCAGCTTGAAATGAAGGTGCCCAAGGCATGTGTGAAGCTGTGTGC
CAAGTTCTATTCCGACAAGGACATGAGGATGTTCCGGGATTTGATTGATG
AGGAGTATCGCGTACACTGGTTGGTGGACTCGTTGCCAGCGGCGGTGCGG
AACGATCGTTTCAATTTCATTTCCCGGGGGTTTCCGATTGGCTTTGTGAC
CCCGTCGACGTATACAGATCCTAATGTGCATTGCCTTTACAACCACGTCC
GAATCATAATTAAATATAATGAGGACCCAGCCTTGTTTAAGGGTTCTAGG
ATCGTCGGATTTGAGGTGGTGCCGTTCTCGGTGAAGCATAGGTGGGATAA
TAAGGGGGAGGCAACATTCAACCCCGAGACCACCGTCCTGGACACGTGTA
ACGACATGAATCATGTCAAGTACCAGTCGGAAGGGTTCCAAACGGTTGAG
GCCGAGGGGGAGGTCATTTTCACCTATGATGTTGAGTGGAAGGAGTCGGA
CGTGCCCTGGTCCCACAGGTGGGATGTTTATTTTACTGGCAACCCTGACG
ATGAGATCCACTATTTCTCCATCGTTAATTCACTAATGATTGTCCTGTTC
CTCACGGGTGTTGTAGCGATGATCATGCTCCGGACATTGCGCCGCGACAT
CAGCAATTACAATGAGATGCAAACCTTGGAGGAGGCCCAGGAGGAGAGTG
GTTGGAAGCTCGTGCACGGAGACGTCTTCCGCCCACCCCAAACCTCGCCC
ATGCTCCTCGCGGTTCTCGCCGGCTCGGGCGCCCAGCTCCTGGCCATGGC
GACAGCCACCCTGACTTTCGCTCTGTTGGGATTCATGTCTCCGGCGAACC
GCGGGGGGCTCCTGACCTCCCTCCTCCTCCTCTTCGTGTTCATGGGCTCG
GTAGCTGGATACTCCTCTGCAAGGCTCTACAAGCTTTTCGGAGGAAAGGA
CTGGCGGCGAAACACCATTTTGACGGCAACCTTGTTTCCGGGGGTGATGT
TTGCGATGTTTTCCGTGTTGAATGTTGTGGCGATGGTTGAGAACTCCTCG
ACGGCCGTGCCCTTTGTCTGGGTGCTCTGCCTGTTGGTCCTCTGGTTAGG
TGTGTCGAGCCCTCTTGTGTTCGTGGGGTCTTACTTCGGCTTTAAGAAAG
ACGCATTGGAGGTGCCGGTGCGGACGAACCAGATAGCACGGCATGTCCCT
GAGCAGATGTGGTATACACGCCCGCTCTTCTCGATTGCCCTTGGGGGGAT
TTTGCCGTTCGGCGCTGTGTGCATTGAGCTATTTTTCATTATGTCTGCTT
TGTGGTTGCATCAGATTTACTACGTGTTTGGGTTTCTCATGTGCGTATTT
TTCATCTTAGTGGCGACATGCGCAGAGATTACAATCGTCATGACGTACTT
CCAGCTATGCAATGAGGATTATCGGTGGTGGTGGCGTTCATTCCTCTCTT
CAGGCTCGGCAGCAATGTACCTGTTCGTGTATTCCATTTGGTATTTCGAG
AGCAAGCTTCACATTGATGCTGCTGTTTCAATCTTCATCTACTTCACATA
CATGGGCATGATCTCCATGGCATTTTCCCTCATGACTGGCGCAATCGGTC
TTTTCTCCTGTTTATGGTTTACCCGGAAGATATACGGGGCTATCAAGGTT
GATTAATCAGGCGTAGAGGAGGGAGAAGGGAAGATGGGAGGATGAGAAAA
AGAGAGAAATCTACACAGGCGCTCACGTAGCGAGAGAAGAATACGTACCC
GAAGACGCGGGGGCCGAACGGAGCCCCCCCCCTCCAAGTCCAACCTCGAT
CAAAAATAATACCAACGAACGACGGCACAAGAGTGAATCAGGAAAAAAGA
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protein sequence of NO01G02050.1

>NO01G02050.1-protein ID=NO01G02050.1-protein|Name=NO01G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=636bp
MKASLVVFALGAAGTVQAGFYLPGVAPKSYELRENVPLKVNKVTSTKTQI
PYEYYDIPFCLPPKRRGELENLGEVLAGDAITNSPYQLEMKVPKACVKLC
AKFYSDKDMRMFRDLIDEEYRVHWLVDSLPAAVRNDRFNFISRGFPIGFV
TPSTYTDPNVHCLYNHVRIIIKYNEDPALFKGSRIVGFEVVPFSVKHRWD
NKGEATFNPETTVLDTCNDMNHVKYQSEGFQTVEAEGEVIFTYDVEWKES
DVPWSHRWDVYFTGNPDDEIHYFSIVNSLMIVLFLTGVVAMIMLRTLRRD
ISNYNEMQTLEEAQEESGWKLVHGDVFRPPQTSPMLLAVLAGSGAQLLAM
ATATLTFALLGFMSPANRGGLLTSLLLLFVFMGSVAGYSSARLYKLFGGK
DWRRNTILTATLFPGVMFAMFSVLNVVAMVENSSTAVPFVWVLCLLVLWL
GVSSPLVFVGSYFGFKKDALEVPVRTNQIARHVPEQMWYTRPLFSIALGG
ILPFGAVCIELFFIMSALWLHQIYYVFGFLMCVFFILVATCAEITIVMTY
FQLCNEDYRWWWRSFLSSGSAAMYLFVYSIWYFESKLHIDAAVSIFIYFT
YMGMISMAFSLMTGAIGLFSCLWFTRKIYGAIKVD*
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mRNA from alignment at chr1:518533..521177+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02050.1 ID=NO01G02050.1|Name=NO01G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2645bp|location=Sequence derived from alignment at chr1:518533..521177+ (Nannochloropsis oceanica)
AACAGGCCCTGAGTTGTTTCGTGCGCCTTTTGTCTAGCCGCGCAAATTGG
TCTACTCTGTCCCATCTGCCCATATTCTCAAGCTGCCTGTGAACTAATAT
GAAGGCCAGCCTCGTGGTCTTCGCCCTTGGTGCCGCCGGCACGGTCCAAG
CTGGCTTTTACTTGCCTGGTGTGGCACCCAAAAGTTACGAGTTGAGAGAA
AATGTATGTGAGAGTAAGGGGTGGGAGGGCCTGGGTGCGATGGGCGCGAC
CCTGTCTGCGGCCTTGTGGAAAAGTGAGAACGCCAGAAGGCTGCATCGAG
GCCCAAGCCGCCGCGAAAGGGAATCCACACATGACAACTATATAGATTCC
TTTCAGACCCCGGCCCACAAATAGCTCAAATGAAACTCAGATTAGCACCT
TTCTCCTTCACCCACCCCATCCTCGTAACCCCATAGGTGCCTCTCAAGGT
GAACAAAGTCACCTCAACCAAAACTCAAATCCCGTACGAATACTACGACA
TTCCCTTCTGTCTCCCACCGAAGCGTCGGGGAGAACTGGAGAACCTGGGA
GAGGTCCTGGCAGGGGACGCTATTACCAACAGCCCGTACCAGCTTGAAAT
GAAGGTGCCCAAGGCATGTGTGAAGCTGTGTGCCAAGTTCTATTCCGACA
AGGACATGAGGATGTTCCGGGATTTGATTGATGAGGAGTATCGCGTACAC
TGGTTGGTGGACTCGTTGCCAGCGGCGGTGCGGAACGATCGTTTCAATTT
CATTTCCCGGGGGTTTCCGATTGGCTTTGTGACCCCGTCGACGTATACAG
ATCCTAATGTGCATTGCCTTTACAACCACGTCCGAATCATAATTAAATAT
AATGAGGACCCAGCCTTGTTTAAGGGTTCTAGGATCGTCGGATTTGAGGT
GGTGCCGTTCTCGGTGAAGCATAGGTGGGATAATAAGGGGGAGGTGAGTT
TTTGGGTTGGGGTCGAAGGGGAGGAGGGAGGAGGGGAGCGAAGGGCCTAG
ACAGAGCCAGGAATATACTGATGCTTCGCTCTTGTTCGAATAAGCAAGCT
TCTATCCCTGCTATCGCGGTTTTCCAAACCTCTATAAAGAAAACATTCAT
CCCAACTTACCCTATTTCCTCCATTCCTCTATCCCTCCCTTGCCTCCCCC
CTCAGGCAACATTCAACCCCGAGACCACCGTCCTGGACACGTGTAACGAC
ATGAATCATGTCAAGTACCAGTCGGAAGGGTTCCAAACGGTTGAGGCCGA
GGGGGAGGTCATTTTCACCTATGATGTTGAGTGGAAGGAGTCGGACGTGC
CCTGGTCCCACAGGTGGGATGTTTATTTTACTGGCAACCCTGACGATGAG
ATCCACTATTTCTCCATCGTTAATTCACTAATGATTGTCCTGTTCCTCAC
GGGTGTTGTAGCGATGATCATGCTCCGGACATTGCGCCGCGACATCAGCA
ATTACAATGAGATGCAAACCTTGGAGGAGGCCCAGGAGGAGAGTGGTTGG
AAGCTCGTGCACGGAGACGTCTTCCGCCCACCCCAAACCTCGCCCATGCT
CCTCGCGGTTCTCGCCGGCTCGGGCGCCCAGCTCCTGGCCATGGCGACAG
CCACCCTGACTTTCGCTCTGTTGGGATTCATGTCTCCGGCGAACCGCGGG
GGGCTCCTGACCTCCCTCCTCCTCCTCTTCGTGTTCATGGGCTCGGTAGC
TGGATACTCCTCTGCAAGGCTCTACAAGCTTTTCGGAGGAAAGGACTGGC
GGCGAAACACCATTTTGACGGCAACCTTGTTTCCGGGGGTGATGTTTGCG
ATGTTTTCCGTGTTGAATGTTGTGGCGATGGTTGAGAACTCCTCGACGGC
CGTGCCCTTTGTCTGGGTGCTCTGCCTGTTGGTCCTCTGGTTAGGTGTGT
CGAGCCCTCTTGTGTTCGTGGGGTCTTACTTCGGCTTTAAGAAAGACGCA
TTGGAGGTGCCGGTGCGGACGAACCAGATAGCACGGCATGTCCCTGAGCA
GATGTGGTATACACGCCCGCTCTTCTCGATTGCCCTTGGGGGGATTTTGC
CGTTCGGCGCTGTGTGCATTGAGCTATTTTTCATTATGTCTGCTTTGTGG
TTGCATCAGATTTACTACGTGTTTGGGTTTCTCATGTGCGTATTTTTCAT
CTTAGTGGCGACATGCGCAGAGATTACAATCGTCATGACGTACTTCCAGC
TATGCAATGAGGATTATCGGTGGTGGTGGCGTTCATTCCTCTCTTCAGGC
TCGGCAGCAATGTACCTGTTCGTGTATTCCATTTGGTATTTCGAGAGCAA
GCTTCACATTGATGCTGCTGTTTCAATCTTCATCTACTTCACATACATGG
GCATGATCTCCATGGCATTTTCCCTCATGACTGGCGCAATCGGTCTTTTC
TCCTGTTTATGGTTTACCCGGAAGATATACGGGGCTATCAAGGTTGATTA
ATCAGGCGTAGAGGAGGGAGAAGGGAAGATGGGAGGATGAGAAAAAGAGA
GAAATCTACACAGGCGCTCACGTAGCGAGAGAAGAATACGTACCCGAAGA
CGCGGGGGCCGAACGGAGCCCCCCCCCTCCAAGTCCAACCTCGATCAAAA
ATAATACCAACGAACGACGGCACAAGAGTGAATCAGGAAAAAAGA
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Coding sequence (CDS) from alignment at chr1:518533..521177+

>NO01G02050.1 ID=NO01G02050.1|Name=NO01G02050.1|organism=Nannochloropsis oceanica|type=CDS|length=1908bp|location=Sequence derived from alignment at chr1:518533..521177+ (Nannochloropsis oceanica)
ATGAAGGCCAGCCTCGTGGTCTTCGCCCTTGGTGCCGCCGGCACGGTCCA
AGCTGGCTTTTACTTGCCTGGTGTGGCACCCAAAAGTTACGAGTTGAGAG
AAAATGTGCCTCTCAAGGTGAACAAAGTCACCTCAACCAAAACTCAAATC
CCGTACGAATACTACGACATTCCCTTCTGTCTCCCACCGAAGCGTCGGGG
AGAACTGGAGAACCTGGGAGAGGTCCTGGCAGGGGACGCTATTACCAACA
GCCCGTACCAGCTTGAAATGAAGGTGCCCAAGGCATGTGTGAAGCTGTGT
GCCAAGTTCTATTCCGACAAGGACATGAGGATGTTCCGGGATTTGATTGA
TGAGGAGTATCGCGTACACTGGTTGGTGGACTCGTTGCCAGCGGCGGTGC
GGAACGATCGTTTCAATTTCATTTCCCGGGGGTTTCCGATTGGCTTTGTG
ACCCCGTCGACGTATACAGATCCTAATGTGCATTGCCTTTACAACCACGT
CCGAATCATAATTAAATATAATGAGGACCCAGCCTTGTTTAAGGGTTCTA
GGATCGTCGGATTTGAGGTGGTGCCGTTCTCGGTGAAGCATAGGTGGGAT
AATAAGGGGGAGGCAACATTCAACCCCGAGACCACCGTCCTGGACACGTG
TAACGACATGAATCATGTCAAGTACCAGTCGGAAGGGTTCCAAACGGTTG
AGGCCGAGGGGGAGGTCATTTTCACCTATGATGTTGAGTGGAAGGAGTCG
GACGTGCCCTGGTCCCACAGGTGGGATGTTTATTTTACTGGCAACCCTGA
CGATGAGATCCACTATTTCTCCATCGTTAATTCACTAATGATTGTCCTGT
TCCTCACGGGTGTTGTAGCGATGATCATGCTCCGGACATTGCGCCGCGAC
ATCAGCAATTACAATGAGATGCAAACCTTGGAGGAGGCCCAGGAGGAGAG
TGGTTGGAAGCTCGTGCACGGAGACGTCTTCCGCCCACCCCAAACCTCGC
CCATGCTCCTCGCGGTTCTCGCCGGCTCGGGCGCCCAGCTCCTGGCCATG
GCGACAGCCACCCTGACTTTCGCTCTGTTGGGATTCATGTCTCCGGCGAA
CCGCGGGGGGCTCCTGACCTCCCTCCTCCTCCTCTTCGTGTTCATGGGCT
CGGTAGCTGGATACTCCTCTGCAAGGCTCTACAAGCTTTTCGGAGGAAAG
GACTGGCGGCGAAACACCATTTTGACGGCAACCTTGTTTCCGGGGGTGAT
GTTTGCGATGTTTTCCGTGTTGAATGTTGTGGCGATGGTTGAGAACTCCT
CGACGGCCGTGCCCTTTGTCTGGGTGCTCTGCCTGTTGGTCCTCTGGTTA
GGTGTGTCGAGCCCTCTTGTGTTCGTGGGGTCTTACTTCGGCTTTAAGAA
AGACGCATTGGAGGTGCCGGTGCGGACGAACCAGATAGCACGGCATGTCC
CTGAGCAGATGTGGTATACACGCCCGCTCTTCTCGATTGCCCTTGGGGGG
ATTTTGCCGTTCGGCGCTGTGTGCATTGAGCTATTTTTCATTATGTCTGC
TTTGTGGTTGCATCAGATTTACTACGTGTTTGGGTTTCTCATGTGCGTAT
TTTTCATCTTAGTGGCGACATGCGCAGAGATTACAATCGTCATGACGTAC
TTCCAGCTATGCAATGAGGATTATCGGTGGTGGTGGCGTTCATTCCTCTC
TTCAGGCTCGGCAGCAATGTACCTGTTCGTGTATTCCATTTGGTATTTCG
AGAGCAAGCTTCACATTGATGCTGCTGTTTCAATCTTCATCTACTTCACA
TACATGGGCATGATCTCCATGGCATTTTCCCTCATGACTGGCGCAATCGG
TCTTTTCTCCTGTTTATGGTTTACCCGGAAGATATACGGGGCTATCAAGG
TTGATTAA
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Synonyms
Publications