NO01G01940.1, NO01G01940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01940.1
Unique NameNO01G01940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length693
Alignment locationchr1:490090..490782 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:490090..490782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01940.1 vs.
Match: XP_005856362.1 (transmembrane emp24 domain trafficking protein 2 [Nannochloropsis gaditana CCMP526]; EKU19997.1 transmembrane emp24 domain trafficking protein 2 [Nannochloropsis gaditana CCMP526]; EWM29134.1 transmembrane emp24 domain trafficking protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 340.9 bits (873), Expect = 3.100e-90
Identity = 181/222 (81.53%), Postives = 193/222 (86.94%), Query Frame = 0 
Query:    9 SPRIPQRRDASNVLHSLVLYPATFLLLLLLLPHSTTAFTVEVAPGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAADKSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRTDVFVDEDIASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 231
            S RIP R        SL++  +  LL+LLL P   T+FTVEVAPGT EC++ VAT+GDDFLGNFEVLT GSYAPVEVTVEGPDGK LWRAADKSEETFSFEA+ NGD+TLCI NGA+GR DDG  RLVGFSFRTDV VDE IASE+SIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV
Sbjct:    9 SARIPSR--------SLLVVLSLLLLILLLKP--ATSFTVEVAPGTVECYITVATQGDDFLGNFEVLTGGSYAPVEVTVEGPDGKLLWRAADKSEETFSFEAEENGDHTLCISNGARGRADDGIPRLVGFSFRTDVLVDEAIASEQSIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLIWTVVEAVVLVGMAVWQISIISKFFEVRRAV 220
The following BLAST results are available for this feature:
BLAST of NO01G01940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856362.13.100e-9081.53transmembrane emp24 domain trafficking protein 2 [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01940NO01G01940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01940.1NO01G01940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01940.1.cds1NO01G01940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01940.1 ID=NO01G01940.1|Name=NO01G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=693bp
ATGGAGCGATTGCCACCATTACACTCACCAAGAATACCACAACGACGAGA
TGCTTCAAATGTATTACATTCCTTGGTCCTCTATCCCGCCACCTTCCTCC
TTCTTCTTCTTCTCCTGCCCCATTCCACCACGGCCTTCACAGTCGAAGTC
GCTCCGGGGACAGCAGAGTGCTTTGTCGCCGTGGCGACGGAAGGCGACGA
CTTCTTGGGTAATTTTGAGGTGCTGACCGAGGGGAGTTACGCCCCAGTGG
AAGTGACGGTGGAGGGCCCAGACGGAAAGCAGTTGTGGCGCGCGGCGGAT
AAGAGCGAAGAGACGTTCTCGTTCGAGGCCAAGGCGAATGGGGATTATAC
TTTGTGCATTGGTAATGGTGCGAAGGGGCGGGTGGACGACGGGACGACCC
GACTGGTGGGTTTTTCGTTTCGGACTGACGTGTTCGTGGACGAGGATATT
GCGAGCGAGGAGAGCATTCGACGACTCATTGAACTTGGGAATTCGTTGAC
CAAGGGTTTGACGAACGTAATGGATCATCAGAGTTATATGCGGCAACGCG
AGGATTTGCATGCATCAACCATGGAGAGCATTGGCTCTAGGGTTTTGATC
TGGACGGTGGTGGAGGCTGTGGTGTTGGTGGGTATGGCGGTTTGGCAGAT
CAGCATTATTAGCAAGTTTTTTGAGGTGCGACGAGCAGTGTAA
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protein sequence of NO01G01940.1

>NO01G01940.1-protein ID=NO01G01940.1-protein|Name=NO01G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MERLPPLHSPRIPQRRDASNVLHSLVLYPATFLLLLLLLPHSTTAFTVEV
APGTAECFVAVATEGDDFLGNFEVLTEGSYAPVEVTVEGPDGKQLWRAAD
KSEETFSFEAKANGDYTLCIGNGAKGRVDDGTTRLVGFSFRTDVFVDEDI
ASEESIRRLIELGNSLTKGLTNVMDHQSYMRQREDLHASTMESIGSRVLI
WTVVEAVVLVGMAVWQISIISKFFEVRRAV*
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mRNA from alignment at chr1:490090..490782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01940.1 ID=NO01G01940.1|Name=NO01G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=693bp|location=Sequence derived from alignment at chr1:490090..490782- (Nannochloropsis oceanica)
ATGGAGCGATTGCCACCATTACACTCACCAAGAATACCACAACGACGAGA
TGCTTCAAATGTATTACATTCCTTGGTCCTCTATCCCGCCACCTTCCTCC
TTCTTCTTCTTCTCCTGCCCCATTCCACCACGGCCTTCACAGTCGAAGTC
GCTCCGGGGACAGCAGAGTGCTTTGTCGCCGTGGCGACGGAAGGCGACGA
CTTCTTGGGTAATTTTGAGGTGCTGACCGAGGGGAGTTACGCCCCAGTGG
AAGTGACGGTGGAGGGCCCAGACGGAAAGCAGTTGTGGCGCGCGGCGGAT
AAGAGCGAAGAGACGTTCTCGTTCGAGGCCAAGGCGAATGGGGATTATAC
TTTGTGCATTGGTAATGGTGCGAAGGGGCGGGTGGACGACGGGACGACCC
GACTGGTGGGTTTTTCGTTTCGGACTGACGTGTTCGTGGACGAGGATATT
GCGAGCGAGGAGAGCATTCGACGACTCATTGAACTTGGGAATTCGTTGAC
CAAGGGTTTGACGAACGTAATGGATCATCAGAGTTATATGCGGCAACGCG
AGGATTTGCATGCATCAACCATGGAGAGCATTGGCTCTAGGGTTTTGATC
TGGACGGTGGTGGAGGCTGTGGTGTTGGTGGGTATGGCGGTTTGGCAGAT
CAGCATTATTAGCAAGTTTTTTGAGGTGCGACGAGCAGTGTAA
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Coding sequence (CDS) from alignment at chr1:490090..490782-

>NO01G01940.1 ID=NO01G01940.1|Name=NO01G01940.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr1:490090..490782- (Nannochloropsis oceanica)
ATGGAGCGATTGCCACCATTACACTCACCAAGAATACCACAACGACGAGA
TGCTTCAAATGTATTACATTCCTTGGTCCTCTATCCCGCCACCTTCCTCC
TTCTTCTTCTTCTCCTGCCCCATTCCACCACGGCCTTCACAGTCGAAGTC
GCTCCGGGGACAGCAGAGTGCTTTGTCGCCGTGGCGACGGAAGGCGACGA
CTTCTTGGGTAATTTTGAGGTGCTGACCGAGGGGAGTTACGCCCCAGTGG
AAGTGACGGTGGAGGGCCCAGACGGAAAGCAGTTGTGGCGCGCGGCGGAT
AAGAGCGAAGAGACGTTCTCGTTCGAGGCCAAGGCGAATGGGGATTATAC
TTTGTGCATTGGTAATGGTGCGAAGGGGCGGGTGGACGACGGGACGACCC
GACTGGTGGGTTTTTCGTTTCGGACTGACGTGTTCGTGGACGAGGATATT
GCGAGCGAGGAGAGCATTCGACGACTCATTGAACTTGGGAATTCGTTGAC
CAAGGGTTTGACGAACGTAATGGATCATCAGAGTTATATGCGGCAACGCG
AGGATTTGCATGCATCAACCATGGAGAGCATTGGCTCTAGGGTTTTGATC
TGGACGGTGGTGGAGGCTGTGGTGTTGGTGGGTATGGCGGTTTGGCAGAT
CAGCATTATTAGCAAGTTTTTTGAGGTGCGACGAGCAGTGTAA
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Synonyms
Publications