NO01G01900.1, NO01G01900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01900.1
Unique NameNO01G01900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length663
Alignment locationchr1:478349..479011 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:478349..479011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G01900.1 vs.
Match: XP_003290682.1 (hypothetical protein DICPUDRAFT_98774 [Dictyostelium purpureum]; EGC32794.1 hypothetical protein DICPUDRAFT_98774 [Dictyostelium purpureum])

HSP 1 Score: 89.4 bits (220), Expect = 1.600e-14
Identity = 50/158 (31.65%), Postives = 89/158 (56.33%), Query Frame = 0 
Query:    1 MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDIHFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVTYPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRALTDVELIVF 159
            +YLVH+SE  +P+GS LK+A  GV++TL + V      +A+ +L L+E +     + L QA  +L+   K++Y+ G +++ + + P  FY+++ G++ VT     + DL           + +  +GDYFGE +   +  T     V+A+TDVE++ F
Sbjct:  491 LYLVHISEHTLPQGSGLKIAKEGVQHTLSLDVIRSSHSEAVDILKLIESVDIFRSIPLTQACEILQTATKRKYSQGSLIIARDTEPDAFYIIASGVVCVT-----IGDL-----------KKNLIVGDYFGEMSL--VMGTLRSANVQAVTDVEVLSF 630
The following BLAST results are available for this feature:
BLAST of NO01G01900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_003290682.11.600e-1431.65hypothetical protein DICPUDRAFT_98774 [Dictyosteli... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01900NO01G01900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01900.1NO01G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01900.1.cds1NO01G01900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01900.1 ID=NO01G01900.1|Name=NO01G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=663bp
ATGTACCTGGTGCACGTGTCGGAAGGTGCAGTACCAAAGGGATCCAAGCT
CAAGGTCGCACCTGTGGGAGTGAAAAACACATTGGAGGTCCCGGTGGATG
TGCCGGAGTTCAGAAAGGCTATCTCAGTGCTAAGCCTCGTAGAAGATATT
CACTTCTTAGCCGACTTAACTTTGCCACAAGCGCGCGGCTTACTTGAGAT
TGGTTACAAGAAGCGCTATGCAGCGGGGGAGGTGGTGGTACCCAAGGGGT
CGAGGCCGACGAATTTTTACGTCTTGTCCATTGGCTTGCTCGAAGTGACA
TACCCGAGAGACGATCTCGACGACTTGGACGAGGAGGAGAATACCGAAGA
AAAGGTGAAGCGAGTTCACTGGTCTATGGGGGACTACTTCGGGGAGGCGG
CCTTTGCGCCTCTCACGGCCACCCCGGGACATGATGAAGTGCGGGCGCTG
ACAGATGTGGAGCTGATTGTGTTTGCCGGCTCGGAGCTCCGGCACCTGCT
GGCAGATGGCCCCAGCGTCTCTCGAGGTCTGCTACAATGCCGATATTTTT
CTTCGTCCTCGTCCTTATCCTTTCCTTCCTCCTCAATGCGCCTAGAATTG
TTGCTTACGTTCGACTATACCCTCAATTCTTTGGCGCTCAAAAGCTCCAA
CTTGAGAGCTTAG
back to top

protein sequence of NO01G01900.1

>NO01G01900.1-protein ID=NO01G01900.1-protein|Name=NO01G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDI
HFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVT
YPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRAL
TDVELIVFAGSELRHLLADGPSVSRGLLQCRYFSSSSSLSFPSSSMRLEL
LLTFDYTLNSLALKSSNLRA*
back to top

mRNA from alignment at chr1:478349..479011+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01900.1 ID=NO01G01900.1|Name=NO01G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=663bp|location=Sequence derived from alignment at chr1:478349..479011+ (Nannochloropsis oceanica)
ATGTACCTGGTGCACGTGTCGGAAGGTGCAGTACCAAAGGGATCCAAGCT
CAAGGTCGCACCTGTGGGAGTGAAAAACACATTGGAGGTCCCGGTGGATG
TGCCGGAGTTCAGAAAGGCTATCTCAGTGCTAAGCCTCGTAGAAGATATT
CACTTCTTAGCCGACTTAACTTTGCCACAAGCGCGCGGCTTACTTGAGAT
TGGTTACAAGAAGCGCTATGCAGCGGGGGAGGTGGTGGTACCCAAGGGGT
CGAGGCCGACGAATTTTTACGTCTTGTCCATTGGCTTGCTCGAAGTGACA
TACCCGAGAGACGATCTCGACGACTTGGACGAGGAGGAGAATACCGAAGA
AAAGGTGAAGCGAGTTCACTGGTCTATGGGGGACTACTTCGGGGAGGCGG
CCTTTGCGCCTCTCACGGCCACCCCGGGACATGATGAAGTGCGGGCGCTG
ACAGATGTGGAGCTGATTGTGTTTGCCGGCTCGGAGCTCCGGCACCTGCT
GGCAGATGGCCCCAGCGTCTCTCGAGGTCTGCTACAATGCCGATATTTTT
CTTCGTCCTCGTCCTTATCCTTTCCTTCCTCCTCAATGCGCCTAGAATTG
TTGCTTACGTTCGACTATACCCTCAATTCTTTGGCGCTCAAAAGCTCCAA
CTTGAGAGCTTAG
back to top

Coding sequence (CDS) from alignment at chr1:478349..479011+

>NO01G01900.1 ID=NO01G01900.1|Name=NO01G01900.1|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at chr1:478349..479011+ (Nannochloropsis oceanica)
ATGTACCTGGTGCACGTGTCGGAAGGTGCAGTACCAAAGGGATCCAAGCT
CAAGGTCGCACCTGTGGGAGTGAAAAACACATTGGAGGTCCCGGTGGATG
TGCCGGAGTTCAGAAAGGCTATCTCAGTGCTAAGCCTCGTAGAAGATATT
CACTTCTTAGCCGACTTAACTTTGCCACAAGCGCGCGGCTTACTTGAGAT
TGGTTACAAGAAGCGCTATGCAGCGGGGGAGGTGGTGGTACCCAAGGGGT
CGAGGCCGACGAATTTTTACGTCTTGTCCATTGGCTTGCTCGAAGTGACA
TACCCGAGAGACGATCTCGACGACTTGGACGAGGAGGAGAATACCGAAGA
AAAGGTGAAGCGAGTTCACTGGTCTATGGGGGACTACTTCGGGGAGGCGG
CCTTTGCGCCTCTCACGGCCACCCCGGGACATGATGAAGTGCGGGCGCTG
ACAGATGTGGAGCTGATTGTGTTTGCCGGCTCGGAGCTCCGGCACCTGCT
GGCAGATGGCCCCAGCGTCTCTCGAGGTCTGCTACAATGCCGATATTTTT
CTTCGTCCTCGTCCTTATCCTTTCCTTCCTCCTCAATGCGCCTAGAATTG
TTGCTTACGTTCGACTATACCCTCAATTCTTTGGCGCTCAAAAGCTCCAA
CTTGAGAGCTTAG
back to top
Synonyms
Publications