NO01G01790.1, NO01G01790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01790.1
Unique NameNO01G01790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length986
Alignment locationchr1:453729..455634 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:453729..455634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01790.1 vs.
Match: EWM29082.1 (putative ribonuclease p mrp protein subunit pop5 [Nannochloropsis gaditana]; EWM29083.1 putative ribonuclease p mrp protein subunit pop5 [Nannochloropsis gaditana])

HSP 1 Score: 169.5 bits (428), Expect = 9.400e-39
Identity = 102/176 (57.95%), Postives = 119/176 (67.61%), Query Frame = 0 
Query:    1 MRVRLRYLTCKLDL-PLQADTARKKTTAFEILKTIKESIQINFGDFGIAALLNSLQIRYYDEATHIFILRCSREGYRSAWAAMTLLTSLGGG-NSSNSSSTSSTRTKASISVLRVSGSVRTCRTDAVEILVMAAKAAAAACVLQQQMEEVHEEDEEWVKTKRIYYQTQIEGAIQGV 175
            MRVRLRYLTCKL L P Q    +KK TAF+IL+ IKES+Q NFG+FG A LL S+Q+RYYDEAT IFILRC R+ +RS WAAMTL+TSLGG   S NS    S+  KA+ISVLRVSGSVRTCR DAV ILV AA         + +      + E  +     +YQ QI  AIQGV
Sbjct:    1 MRVRLRYLTCKLHLRPHQEGALKKKVTAFDILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRLDAVSILVRAAN--------ELEGNNRRPDQESLMAASTAFYQAQISSAIQGV 168
The following BLAST results are available for this feature:
BLAST of NO01G01790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29082.19.400e-3957.95putative ribonuclease p mrp protein subunit pop5 [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01790NO01G01790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01790.1NO01G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01790.1.cds1NO01G01790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01790.1.cds2NO01G01790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01790.1 ID=NO01G01790.1|Name=NO01G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=986bp
TGGGGTAAAACGAGGACTATGTTAGTAAATAATGTGTGCTTGAAAAGTTG
CCGCCGTGTGCCTTACGAGCGATAGGAGGATAACAGCGAACGGCTGTGGC
TCTTGTGCGTGAGCGGCAGAGAAAAGAGCAGAAATAGAATTATTTGTCTC
ACGGTCACACGCGCAATGCTACCACACGCACAGGATAAGGACGGTGGATA
GGGAGGAGGGGGGGCAGCCATGCGGGTCCGCCTCCGCTACTTGACTTGCA
AACTCGATCTCCCCCTGCAGGCCGATACCGCTCGGAAGAAGACGACTGCG
TTTGAAATCCTCAAGACCATCAAGGAATCAATCCAAATTAATTTTGGTGA
CTTTGGAATAGCTGCCCTGCTCAATTCTTTGCAGATCCGGTACTATGATG
AAGCCACGCACATCTTTATTTTGCGCTGCTCACGCGAAGGCTACCGCTCC
GCCTGGGCAGCCATGACCCTACTTACTTCCCTCGGTGGCGGTAACAGCAG
TAACAGCAGCAGTACTAGTAGCACTCGTACTAAAGCAAGTATAAGCGTGT
TACGTGTTTCGGGCTCCGTGCGCACGTGTCGGACAGACGCGGTAGAGATC
CTGGTAATGGCTGCGAAAGCAGCAGCAGCGGCGTGTGTTTTGCAACAGCA
GATGGAGGAAGTCCACGAAGAGGACGAGGAGTGGGTAAAAACCAAGCGCA
TTTACTACCAGACGCAAATTGAAGGGGCCATCCAAGGCGTGTAAAAAGAG
ACGACACAGAGGTTGGAAACAAAGGCCAAGCATCATCCTGGAGTTTTATC
ACATGCACCACTCTTACCGGAGACCAAGACACTCAGGCCCTACAGCTGTT
AACATCAATATCAAGGAGACAAGGCATTGAATAAATGAAAACACTCACAC
AAGAGACCGAGTGGATAGATGCTGAATAGCCCAGCCTAAAGAAAAGTAAT
GGACATAAGTAAATATGACATGACGACAAGGGTGGA
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protein sequence of NO01G01790.1

>NO01G01790.1-protein ID=NO01G01790.1-protein|Name=NO01G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MRVRLRYLTCKLDLPLQADTARKKTTAFEILKTIKESIQINFGDFGIAAL
LNSLQIRYYDEATHIFILRCSREGYRSAWAAMTLLTSLGGGNSSNSSSTS
STRTKASISVLRVSGSVRTCRTDAVEILVMAAKAAAAACVLQQQMEEVHE
EDEEWVKTKRIYYQTQIEGAIQGV*
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mRNA from alignment at chr1:453729..455634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01790.1 ID=NO01G01790.1|Name=NO01G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1906bp|location=Sequence derived from alignment at chr1:453729..455634- (Nannochloropsis oceanica)
TGGGGTAAAACGAGGACTATGTTAGTAAATAATGTGTGCTTGAAAAGTTG
CCGCCGTGTGCCTTACGAGCGATAGGAGGATAACAGCGAACGGCTGTGGC
TCTTGTGCGTGAGCGGCAGAGAAAAGAGCAGAAATAGAATTATTTGTCTC
ACGGTCACACGCGCAATGCTACCACACGCACAGGATAAGGACGGTGGATA
GGGAGGAGGGGGGGCAGCCATGCGGGTCCGCCTCCGCTACTTGACTTGCA
AACTCGATCTCCCCCTGCAGGCCGATACCGCTCGGAAGAAGACGACTGCG
TTTGAAATCCTCAAGACCATCAAGGTGAGGGCACTGCACACGGAAGGCAT
AGAGTGGAGAGGGACAAGGGGGGGGGCACAGATATTTTCATGAGACCCGT
CATCATCTCTCTCGACCTCCCGGCTGTCGGGCTTTCGGTCCCCCTCACTC
TCCACCACCCTGCCTCACGCTTCGCGATGGTGGGTTGCGAACGACTCGCA
TATCCGAGACATTCAGTATAAGCTTGGACTGTTGACATGCCTGCAATGAC
TGTGCCAGTTGTTCATGCTTGTGCTTGTGGTCTTGTGAGCAGTTTTGTGA
GGCCCCTCGAGGAGAGATTTGAATTGCGCATGCCGAAGCAGGCTGAAACT
GTACCGTCCAGAGCACTACACACACCCTATATATCATGTGCACTTGAACC
ACCTCAAGGCTTGTGCGGCTCTGACACCTGTATGCTCGTTCTTGACCGTA
ATGAATCATTGGAAAATCTTCTCCACTCTCTCGCTTGACCTCCGCACTCA
TCTTCCCCTCCCTCCCCACGCAACTATTCTCACCTCTCCTCCACCGTACC
ACCCACAGGAATCAATCCAAATTAATTTTGGTGACTTTGGAATAGCTGCC
CTGCTCAATTCTTTGCAGATCCGGTACTATGATGAAGCCACGCACATCTT
TATTTTGCGCTGCTCACGCGAAGGCTACCGCTCCGCCTGGGCAGCCATGA
CCCTACTTACTTCCCTCGGTGGCGGTAACAGCAGTAACAGCAGCAGTACT
AGTAGCACTCGTACTAAAGCAAGTATAAGCGTGTTACGTGTTTCGGGCTC
CGTGCGCACGTGTCGGACAGACGCGGTAGAGATCCTGGTAATGGCTGCGA
AAGCAGCAGCAGCGGCGTGTGTTTTGCAACAGCAGATGGAGGAAGTCCAC
GAAGAGGACGAGGAGTGGGTAAAAACCAAGCGCATTTACTACCAGACGCA
AATTGAAGGGGCCATCCAAGGCGTGTAAAAAGAGACGACACAGGTAGGTT
GTACAATGAGGGGGAAGAGAAGGGTAGCACACACGTGTGGATGAAGCTGG
GTGAGGAGAGGAAAGGAGCACATAGTAAAAGCGGGTGTGGCGCCAAGGAA
TCTCCCCGCGCCCATGCGTACATTAATGATGCCAGAAGAAACCACATCGC
TTAAAACAACTGCAATGCTCACGTTTGTCCATGACTTGCTGTTGTGCCGC
GGTGTGACATGCACTTTATGTAAAGTTGAAAAAAACGCTTGTTCTTCGAC
ACTTGTTCAAGTATCCCTTCCGTGTTTCTGAGAAATAGAAGAGAAGAGAA
ATATGTAGGTATGGAAAGATGTATACTCTTCGAATTTTCGTGACTTCTCT
TTCGCTCTCCCCTCTGCACACCAAAGCAGAGGTTGGAAACAAAGGCCAAG
CATCATCCTGGAGTTTTATCACATGCACCACTCTTACCGGAGACCAAGAC
ACTCAGGCCCTACAGCTGTTAACATCAATATCAAGGAGACAAGGCATTGA
ATAAATGAAAACACTCACACAAGAGACCGAGTGGATAGATGCTGAATAGC
CCAGCCTAAAGAAAAGTAATGGACATAAGTAAATATGACATGACGACAAG
GGTGGA
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Coding sequence (CDS) from alignment at chr1:453729..455634-

>NO01G01790.1 ID=NO01G01790.1|Name=NO01G01790.1|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at chr1:453729..455634- (Nannochloropsis oceanica)
ATGCGGGTCCGCCTCCGCTACTTGACTTGCAAACTCGATCTCCCCCTGCA
GGCCGATACCGCTCGGAAGAAGACGACTGCGTTTGAAATCCTCAAGACCA
TCAAGGAATCAATCCAAATTAATTTTGGTGACTTTGGAATAGCTGCCCTG
CTCAATTCTTTGCAGATCCGGTACTATGATGAAGCCACGCACATCTTTAT
TTTGCGCTGCTCACGCGAAGGCTACCGCTCCGCCTGGGCAGCCATGACCC
TACTTACTTCCCTCGGTGGCGGTAACAGCAGTAACAGCAGCAGTACTAGT
AGCACTCGTACTAAAGCAAGTATAAGCGTGTTACGTGTTTCGGGCTCCGT
GCGCACGTGTCGGACAGACGCGGTAGAGATCCTGGTAATGGCTGCGAAAG
CAGCAGCAGCGGCGTGTGTTTTGCAACAGCAGATGGAGGAAGTCCACGAA
GAGGACGAGGAGTGGGTAAAAACCAAGCGCATTTACTACCAGACGCAAAT
TGAAGGGGCCATCCAAGGCGTGTAA
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Synonyms
Publications