NO01G01700.1, NO01G01700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01700.1
Unique NameNO01G01700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1831
Alignment locationchr1:429307..431137 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:429307..431137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01700.1 vs.
Match: EWM29066.1 (hypothetical protein Naga_100024g55 [Nannochloropsis gaditana])

HSP 1 Score: 440.7 bits (1132), Expect = 6.900e-120
Identity = 268/539 (49.72%), Postives = 347/539 (64.38%), Query Frame = 0 
Query:   14 CPVCGAKQGGTDAACPVLKDWVMEAKMLYIFEAVKRSAQEVDPEVRRFWRDAISHYLA-QQQSFVFAGEEIKLVYTRRGVLHALCLPRILADSDARSETRTLASMIPTCKGSSAPTRALLQHTARRLAETSIGVTRWALRTLLMSPVQAVWLYVIGHDGEYDEDIEVEEKSEDDVA-MKTFRVHVGLCHAAGKLVAAYFEQRIDVERTVSLTEDYDEEGQGEGHGANRTAMPTTSSGGACSFRQVCRLAAATFASSSSFSSTSVSSSAVAASILKKASRQDCEVLAYMMVQQGMAVLEGNYLKILCGSGKGKVVTDTDRKVLEFRLRVNKLERVLAEREVDMGQAKQRAMALHRQGLSAQAAVELWRYKKLTSLVEKLRGAVVNLVSIHYSIEGVTTDIEIFAGLRGGNEALKQQQAAARGRGLKDVMDVEDALREAQELISETNEIGMALSGPVAAGEARVGEGNEGKEEDAELLRELEALELVERE-------DKQILEEVKKQGKDEVVISYDFPDISHLPHVEGTEMEPVCRAPS 544
            CPVCGA+ G     C +LKDW  E+KMLY FEAVK     V+PEVRRFW DAI HYLA +++SFVF GEEIKL YTRR VL  LCLPRIL++ D   ET  L+S+ P      AP  A L  T+  L E     + W +RTL++ PV+  W Y IGHDG++D+D E+ E  ++ +A ++  RVHVGLC AA +LV AYF  R D+ERTVSL+E  DE G G+  G         ++ G CSF  VCR AA         SS+   S++ A+ IL+  SR D EVLA +MV+  +AV EG+YLKIL   G    +T  D+ VL+FR+RVNK++R+L  +E  M ++K RA  LH +GLSAQA VE  R+KKL + VEKLRGA+VN++SI++SIEG   D+++FAGLRGGN ALKQQ+ AA+  GL  V DVE+ALREAQELI E++E+G  LS P+     R G   + KEE  ELL+ELEAL + E E       +K   E  +   + E  +SYD PDISHL  + G + E V R+ S
Sbjct:   12 CPVCGAQIGSPATCCKILKDWSNESKMLYYFEAVKSDECNVNPEVRRFWADAIVHYLADRKRSFVFNGEEIKLAYTRRSVLSTLCLPRILSELDTTKETCKLSSLTPCVGRVEAPLAARLWRTSWYLTEAGARFSAWTVRTLVVKPVRRAWSYAIGHDGDFDDDTEMREAEDEQIASLRASRVHVGLCEAAAELVTAYFLSRPDLERTVSLSEGGDE-GAGDVQGDGGPGGQGGATAGMCSFLHVCRRAA---------SSSPTPSASPASKILRTCSRVDGEVLATVMVRLKLAVQEGSYLKILGRGGGAGSLTAADKTVLDFRIRVNKIDRMLGAQEAQMVESKLRAAGLHSRGLSAQALVEWRRHKKLATSVEKLRGAMVNMLSIYHSIEGQHADMQVFAGLRGGNLALKQQKTAAKAMGLGGVEDVEEALREAQELIDESDELGKILSSPLM---NREGPTEDIKEE--ELLKELEALAIAEAEGQRDVDIEKDATERRRSAKEAEAAVSYDLPDISHLSPIVG-KTETVARSSS 534
The following BLAST results are available for this feature:
BLAST of NO01G01700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29066.16.900e-12049.72hypothetical protein Naga_100024g55 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01700NO01G01700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01700.1NO01G01700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01700.1.cds1NO01G01700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01700.1 ID=NO01G01700.1|Name=NO01G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp
CAGGCACATTTACAGACGCAATTATCTGCGTGCTTGCCTCGCCGTGGAAG
GAAGAAGGAGTGGTTGTGTGGAAAGCATCCGCCCATGCCAGCCGTTATGA
ACGCTGCGACCGACGTCTCCTGCTGCCCCGTATGTGGCGCAAAACAAGGT
GGTACGGATGCTGCTTGCCCGGTCTTGAAGGACTGGGTCATGGAAGCAAA
GATGCTATACATCTTTGAGGCTGTCAAGAGGTCCGCACAGGAAGTTGACC
CCGAGGTGCGGCGCTTCTGGCGCGACGCAATTTCCCACTATCTGGCCCAG
CAGCAGTCATTCGTCTTTGCCGGGGAAGAAATCAAGCTGGTCTACACCCG
ACGCGGCGTTCTGCACGCCTTATGCTTGCCTCGGATACTGGCGGATTCGG
ACGCACGCTCAGAGACTCGTACATTGGCCAGCATGATCCCCACCTGTAAA
GGAAGCAGTGCACCAACAAGGGCGCTCCTGCAGCATACCGCCCGCCGCCT
AGCAGAAACAAGCATCGGGGTGACTCGATGGGCGTTGCGAACACTCTTGA
TGTCGCCCGTGCAAGCAGTGTGGTTGTATGTCATTGGACATGACGGAGAA
TATGATGAAGATATCGAGGTGGAGGAGAAAAGCGAGGACGACGTTGCTAT
GAAGACGTTCCGCGTGCATGTCGGGCTTTGTCACGCAGCTGGCAAACTTG
TTGCAGCCTATTTTGAGCAGCGGATTGACGTTGAACGGACTGTGAGCCTG
ACGGAGGACTATGACGAGGAAGGACAGGGTGAGGGGCATGGTGCGAACCG
AACTGCAATGCCAACGACGAGCAGCGGTGGTGCGTGTTCGTTCCGGCAGG
TGTGTCGGTTAGCCGCCGCTACTTTCGCTTCGTCATCATCGTTCTCCTCT
ACCAGCGTATCCTCCTCTGCGGTAGCTGCAAGTATCCTCAAAAAAGCCTC
TCGGCAAGACTGTGAGGTGCTCGCCTACATGATGGTGCAACAAGGGATGG
CCGTCCTGGAAGGGAATTACCTCAAGATCCTTTGTGGCAGTGGAAAAGGA
AAAGTTGTCACAGATACCGATAGAAAGGTACTCGAATTTCGCTTACGCGT
CAATAAGCTCGAGCGCGTTCTTGCTGAACGGGAAGTAGACATGGGCCAGG
CAAAGCAGCGGGCGATGGCATTGCACCGGCAAGGGTTGAGCGCACAGGCC
GCGGTGGAACTATGGCGGTACAAAAAACTAACTTCCTTAGTAGAGAAGCT
GAGGGGGGCCGTGGTTAACCTGGTAAGTATTCATTATTCAATTGAGGGAG
TGACAACGGATATAGAGATTTTTGCCGGACTGCGCGGGGGAAATGAGGCT
CTGAAGCAGCAGCAGGCGGCGGCGAGAGGACGGGGTTTGAAGGACGTCAT
GGATGTAGAAGATGCCTTGCGGGAAGCCCAGGAGCTGATTAGTGAGACAA
ATGAGATTGGGATGGCTTTATCTGGACCTGTGGCCGCGGGAGAAGCACGG
GTGGGAGAAGGGAACGAGGGAAAGGAGGAGGACGCGGAGTTGTTGCGGGA
GTTAGAGGCACTGGAGCTTGTGGAGAGGGAGGATAAGCAAATATTGGAGG
AGGTAAAGAAGCAGGGAAAGGATGAAGTGGTGATATCGTATGATTTCCCG
GATATTAGCCATCTTCCTCATGTTGAGGGAACAGAAATGGAGCCGGTCTG
TAGAGCGCCTTCAACGGGGAAAAAAAAACTCCTTGACTAGCAAGTTTCAC
TTTCAGGGTGAGATTTTGGGATAGATTAGAGCATTAGATGGGAAAAACAA
ATAGCAAAAGCACGCACCCATGTATCCAATA
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protein sequence of NO01G01700.1

>NO01G01700.1-protein ID=NO01G01700.1-protein|Name=NO01G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=552bp
MPAVMNAATDVSCCPVCGAKQGGTDAACPVLKDWVMEAKMLYIFEAVKRS
AQEVDPEVRRFWRDAISHYLAQQQSFVFAGEEIKLVYTRRGVLHALCLPR
ILADSDARSETRTLASMIPTCKGSSAPTRALLQHTARRLAETSIGVTRWA
LRTLLMSPVQAVWLYVIGHDGEYDEDIEVEEKSEDDVAMKTFRVHVGLCH
AAGKLVAAYFEQRIDVERTVSLTEDYDEEGQGEGHGANRTAMPTTSSGGA
CSFRQVCRLAAATFASSSSFSSTSVSSSAVAASILKKASRQDCEVLAYMM
VQQGMAVLEGNYLKILCGSGKGKVVTDTDRKVLEFRLRVNKLERVLAERE
VDMGQAKQRAMALHRQGLSAQAAVELWRYKKLTSLVEKLRGAVVNLVSIH
YSIEGVTTDIEIFAGLRGGNEALKQQQAAARGRGLKDVMDVEDALREAQE
LISETNEIGMALSGPVAAGEARVGEGNEGKEEDAELLRELEALELVERED
KQILEEVKKQGKDEVVISYDFPDISHLPHVEGTEMEPVCRAPSTGKKKLL
D*
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mRNA from alignment at chr1:429307..431137-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01700.1 ID=NO01G01700.1|Name=NO01G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp|location=Sequence derived from alignment at chr1:429307..431137- (Nannochloropsis oceanica)
CAGGCACATTTACAGACGCAATTATCTGCGTGCTTGCCTCGCCGTGGAAG
GAAGAAGGAGTGGTTGTGTGGAAAGCATCCGCCCATGCCAGCCGTTATGA
ACGCTGCGACCGACGTCTCCTGCTGCCCCGTATGTGGCGCAAAACAAGGT
GGTACGGATGCTGCTTGCCCGGTCTTGAAGGACTGGGTCATGGAAGCAAA
GATGCTATACATCTTTGAGGCTGTCAAGAGGTCCGCACAGGAAGTTGACC
CCGAGGTGCGGCGCTTCTGGCGCGACGCAATTTCCCACTATCTGGCCCAG
CAGCAGTCATTCGTCTTTGCCGGGGAAGAAATCAAGCTGGTCTACACCCG
ACGCGGCGTTCTGCACGCCTTATGCTTGCCTCGGATACTGGCGGATTCGG
ACGCACGCTCAGAGACTCGTACATTGGCCAGCATGATCCCCACCTGTAAA
GGAAGCAGTGCACCAACAAGGGCGCTCCTGCAGCATACCGCCCGCCGCCT
AGCAGAAACAAGCATCGGGGTGACTCGATGGGCGTTGCGAACACTCTTGA
TGTCGCCCGTGCAAGCAGTGTGGTTGTATGTCATTGGACATGACGGAGAA
TATGATGAAGATATCGAGGTGGAGGAGAAAAGCGAGGACGACGTTGCTAT
GAAGACGTTCCGCGTGCATGTCGGGCTTTGTCACGCAGCTGGCAAACTTG
TTGCAGCCTATTTTGAGCAGCGGATTGACGTTGAACGGACTGTGAGCCTG
ACGGAGGACTATGACGAGGAAGGACAGGGTGAGGGGCATGGTGCGAACCG
AACTGCAATGCCAACGACGAGCAGCGGTGGTGCGTGTTCGTTCCGGCAGG
TGTGTCGGTTAGCCGCCGCTACTTTCGCTTCGTCATCATCGTTCTCCTCT
ACCAGCGTATCCTCCTCTGCGGTAGCTGCAAGTATCCTCAAAAAAGCCTC
TCGGCAAGACTGTGAGGTGCTCGCCTACATGATGGTGCAACAAGGGATGG
CCGTCCTGGAAGGGAATTACCTCAAGATCCTTTGTGGCAGTGGAAAAGGA
AAAGTTGTCACAGATACCGATAGAAAGGTACTCGAATTTCGCTTACGCGT
CAATAAGCTCGAGCGCGTTCTTGCTGAACGGGAAGTAGACATGGGCCAGG
CAAAGCAGCGGGCGATGGCATTGCACCGGCAAGGGTTGAGCGCACAGGCC
GCGGTGGAACTATGGCGGTACAAAAAACTAACTTCCTTAGTAGAGAAGCT
GAGGGGGGCCGTGGTTAACCTGGTAAGTATTCATTATTCAATTGAGGGAG
TGACAACGGATATAGAGATTTTTGCCGGACTGCGCGGGGGAAATGAGGCT
CTGAAGCAGCAGCAGGCGGCGGCGAGAGGACGGGGTTTGAAGGACGTCAT
GGATGTAGAAGATGCCTTGCGGGAAGCCCAGGAGCTGATTAGTGAGACAA
ATGAGATTGGGATGGCTTTATCTGGACCTGTGGCCGCGGGAGAAGCACGG
GTGGGAGAAGGGAACGAGGGAAAGGAGGAGGACGCGGAGTTGTTGCGGGA
GTTAGAGGCACTGGAGCTTGTGGAGAGGGAGGATAAGCAAATATTGGAGG
AGGTAAAGAAGCAGGGAAAGGATGAAGTGGTGATATCGTATGATTTCCCG
GATATTAGCCATCTTCCTCATGTTGAGGGAACAGAAATGGAGCCGGTCTG
TAGAGCGCCTTCAACGGGGAAAAAAAAACTCCTTGACTAGCAAGTTTCAC
TTTCAGGGTGAGATTTTGGGATAGATTAGAGCATTAGATGGGAAAAACAA
ATAGCAAAAGCACGCACCCATGTATCCAATA
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Coding sequence (CDS) from alignment at chr1:429307..431137-

>NO01G01700.1 ID=NO01G01700.1|Name=NO01G01700.1|organism=Nannochloropsis oceanica|type=CDS|length=1656bp|location=Sequence derived from alignment at chr1:429307..431137- (Nannochloropsis oceanica)
ATGCCAGCCGTTATGAACGCTGCGACCGACGTCTCCTGCTGCCCCGTATG
TGGCGCAAAACAAGGTGGTACGGATGCTGCTTGCCCGGTCTTGAAGGACT
GGGTCATGGAAGCAAAGATGCTATACATCTTTGAGGCTGTCAAGAGGTCC
GCACAGGAAGTTGACCCCGAGGTGCGGCGCTTCTGGCGCGACGCAATTTC
CCACTATCTGGCCCAGCAGCAGTCATTCGTCTTTGCCGGGGAAGAAATCA
AGCTGGTCTACACCCGACGCGGCGTTCTGCACGCCTTATGCTTGCCTCGG
ATACTGGCGGATTCGGACGCACGCTCAGAGACTCGTACATTGGCCAGCAT
GATCCCCACCTGTAAAGGAAGCAGTGCACCAACAAGGGCGCTCCTGCAGC
ATACCGCCCGCCGCCTAGCAGAAACAAGCATCGGGGTGACTCGATGGGCG
TTGCGAACACTCTTGATGTCGCCCGTGCAAGCAGTGTGGTTGTATGTCAT
TGGACATGACGGAGAATATGATGAAGATATCGAGGTGGAGGAGAAAAGCG
AGGACGACGTTGCTATGAAGACGTTCCGCGTGCATGTCGGGCTTTGTCAC
GCAGCTGGCAAACTTGTTGCAGCCTATTTTGAGCAGCGGATTGACGTTGA
ACGGACTGTGAGCCTGACGGAGGACTATGACGAGGAAGGACAGGGTGAGG
GGCATGGTGCGAACCGAACTGCAATGCCAACGACGAGCAGCGGTGGTGCG
TGTTCGTTCCGGCAGGTGTGTCGGTTAGCCGCCGCTACTTTCGCTTCGTC
ATCATCGTTCTCCTCTACCAGCGTATCCTCCTCTGCGGTAGCTGCAAGTA
TCCTCAAAAAAGCCTCTCGGCAAGACTGTGAGGTGCTCGCCTACATGATG
GTGCAACAAGGGATGGCCGTCCTGGAAGGGAATTACCTCAAGATCCTTTG
TGGCAGTGGAAAAGGAAAAGTTGTCACAGATACCGATAGAAAGGTACTCG
AATTTCGCTTACGCGTCAATAAGCTCGAGCGCGTTCTTGCTGAACGGGAA
GTAGACATGGGCCAGGCAAAGCAGCGGGCGATGGCATTGCACCGGCAAGG
GTTGAGCGCACAGGCCGCGGTGGAACTATGGCGGTACAAAAAACTAACTT
CCTTAGTAGAGAAGCTGAGGGGGGCCGTGGTTAACCTGGTAAGTATTCAT
TATTCAATTGAGGGAGTGACAACGGATATAGAGATTTTTGCCGGACTGCG
CGGGGGAAATGAGGCTCTGAAGCAGCAGCAGGCGGCGGCGAGAGGACGGG
GTTTGAAGGACGTCATGGATGTAGAAGATGCCTTGCGGGAAGCCCAGGAG
CTGATTAGTGAGACAAATGAGATTGGGATGGCTTTATCTGGACCTGTGGC
CGCGGGAGAAGCACGGGTGGGAGAAGGGAACGAGGGAAAGGAGGAGGACG
CGGAGTTGTTGCGGGAGTTAGAGGCACTGGAGCTTGTGGAGAGGGAGGAT
AAGCAAATATTGGAGGAGGTAAAGAAGCAGGGAAAGGATGAAGTGGTGAT
ATCGTATGATTTCCCGGATATTAGCCATCTTCCTCATGTTGAGGGAACAG
AAATGGAGCCGGTCTGTAGAGCGCCTTCAACGGGGAAAAAAAAACTCCTT
GACTAG
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Synonyms
Publications