NO01G01500.1, NO01G01500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01500.1
Unique NameNO01G01500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1109
Alignment locationchr1:381641..382892 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:381641..382892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01500.1 vs.
Match: EWM29060.1 (hypothetical protein Naga_100024g35 [Nannochloropsis gaditana])

HSP 1 Score: 357.5 bits (916), Expect = 3.800e-95
Identity = 173/246 (70.33%), Postives = 205/246 (83.33%), Query Frame = 0 
Query:   15 LSVLLHAPTPTLAFHLPTITTTPPSPRTDTVAMSAVSSSAVSSLSKNPIVIFPAQFGIAKDYEEMIAELNSRGHPAYAVDLKRFDWLKITKSAVTSDYWKGTLKPTGTLDFYFDAVTATIDQVKAEFPSRKIHLVAHSIGGWVARAYVGEVADPQDVQKRFASLTTLGSPNYPPPSGEGFFSNLDQTRGLLEYVNSNFPGSFHKGMKYVSVGGIGTEGRLGWGLEENVAFISYLPLCGRGGGGGMG 261
            +++L     P ++   P ++T  P   T T A+ A+ +S  S+L+K+PIVIFPAQFG+AKDYEEMIAELNSRGHPAYAVDL RFDWLKITKSA+T DYW+GTLKP+GTLDFYFDA  A I++VK E+P RKIHLVAHSIGGWVARAY GEVADP+DV KRF SLTTLGSPNYPPP+GEG + ++DQTRGLLEYVN  FPG+FHKGMKYVSVGG+GT+GR G GLEE++A+ISYLPLCG+G   G G
Sbjct:    6 MAILFLFLLPLVSAFSPPLSTARPRISTITKAV-ALPASDQSTLNKSPIVIFPAQFGVAKDYEEMIAELNSRGHPAYAVDLSRFDWLKITKSAITQDYWRGTLKPSGTLDFYFDAAAAIIERVKFEYPDRKIHLVAHSIGGWVARAYCGEVADPEDVNKRFISLTTLGSPNYPPPAGEGIWGSIDQTRGLLEYVNLRFPGAFHKGMKYVSVGGVGTKGRFGGGLEESIAYISYLPLCGKGDAEGDG 250
The following BLAST results are available for this feature:
BLAST of NO01G01500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29060.13.800e-9570.33hypothetical protein Naga_100024g35 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01500NO01G01500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01500.1NO01G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01500.1.cds1NO01G01500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01500.1.cds2NO01G01500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01500.1 ID=NO01G01500.1|Name=NO01G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1109bp
ACAGGGCGAGCACAGGCACAAGAAAAAGGCAAGAGCCTAGATGCCGCCGG
TCGTCATGATCTGTCTGAATGCCCTGGCTCTGCTGTCAGTCCTGCTTCAT
GCTCCCACCCCGACCCTCGCCTTCCATCTCCCCACCATCACAACCACGCC
ACCATCCCCCCGTACCGATACCGTCGCAATGTCTGCTGTCTCCTCCTCCG
CCGTTTCATCGCTGTCCAAGAACCCCATTGTCATTTTCCCAGCCCAATTC
GGTATTGCCAAAGACTATGAGGAAATGATTGCTGAGCTGAATTCTAGAGG
GCACCCTGCCTACGCCGTAGACCTCAAGCGGTTTGACTGGCTCAAGATCA
CCAAGTCTGCCGTCACTTCAGATTACTGGAAAGGCACTCTCAAACCCACC
GGTACTCTTGACTTTTACTTCGATGCCGTCACCGCCACCATCGATCAAGT
CAAGGCCGAGTTCCCCTCCCGTAAAATCCATCTCGTCGCTCACTCCATCG
GGGGATGGGTCGCGCGAGCATATGTAGGTGAAGTCGCAGACCCCCAAGAT
GTCCAAAAACGTTTCGCGTCCCTTACTACACTAGGCTCGCCGAACTACCC
CCCTCCATCTGGAGAAGGTTTTTTCAGTAATTTGGATCAAACGCGGGGGT
TGCTTGAATATGTTAATAGTAATTTCCCTGGCTCGTTTCACAAGGGGATG
AAGTACGTGTCGGTGGGGGGAATAGGGACCGAGGGAAGGCTCGGATGGGG
ATTGGAAGAGAACGTGGCTTTCATTAGTTATTTGCCGTTGTGTGGGAGGG
GGGGGGGAGGGGGGATGGGATCATCCCTGAGGAGATTGCTTTCTTGGAAG
GGGCGGTGAGGGTGGAGGTGGAAGCGAAGCACTCAGGCTTTATTCCGACG
GTGGGACCGAGCATTAAGATTCCCGGATACGTGTGGTATGGCACACCAGG
GGTGTTGGAGCAGTGGTTGGTACACTTGCCGGAAAGGAGGAGATGAGATA
GAGGGGATGAGGGAGAAGAGCCGGAGAGGAGGATCCTTTTGCGTGTATGT
ACGAGAGTGTCGACGGTGGTGATCTAGAAAAGAATGAATGTGGCGAGTAA
TGAAAGAGA
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protein sequence of NO01G01500.1

>NO01G01500.1-protein ID=NO01G01500.1-protein|Name=NO01G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MPPVVMICLNALALLSVLLHAPTPTLAFHLPTITTTPPSPRTDTVAMSAV
SSSAVSSLSKNPIVIFPAQFGIAKDYEEMIAELNSRGHPAYAVDLKRFDW
LKITKSAVTSDYWKGTLKPTGTLDFYFDAVTATIDQVKAEFPSRKIHLVA
HSIGGWVARAYVGEVADPQDVQKRFASLTTLGSPNYPPPSGEGFFSNLDQ
TRGLLEYVNSNFPGSFHKGMKYVSVGGIGTEGRLGWGLEENVAFISYLPL
CGRGGGGGMGSSLRRLLSWKGR*
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mRNA from alignment at chr1:381641..382892+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01500.1 ID=NO01G01500.1|Name=NO01G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1252bp|location=Sequence derived from alignment at chr1:381641..382892+ (Nannochloropsis oceanica)
ACAGGGCGAGCACAGGCACAAGAAAAAGGCAAGAGCCTAGATGCCGCCGG
TCGTCATGATCTGTCTGAATGCCCTGGCTCTGCTGTCAGTCCTGCTTCAT
GCTCCCACCCCGACCCTCGCCTTCCATCTCCCCACCATCACAACCACGCC
ACCATCCCCCCGTACCGATACCGTCGCAATGTCTGCTGTCTCCTCCTCCG
CCGTTTCATCGCTGTCCAAGAACCCCATTGTCATTTTCCCAGCCCAATTC
GGTATTGCCAAAGACTATGAGGAAATGATTGCTGAGCTGAATTCTAGAGG
GCACCCTGCCTACGCCGTAGACCTCAAGCGGTTTGACTGGCTCAAGATCA
CCAAGTCTGCCGTCACTTCAGGTGCGTGCTTGAAATACGTTTGCTTTTGG
ATATGGGAGCATTATCTACTTTGATGTTGGGACGCTCGAAGGGGTCATTT
TCTAACTCTCCATCTCTCCCTCACGCGCGCCCTCCCTTCTTCCCTTTCCC
GCTCCCTCAAACAGATTACTGGAAAGGCACTCTCAAACCCACCGGTACTC
TTGACTTTTACTTCGATGCCGTCACCGCCACCATCGATCAAGTCAAGGCC
GAGTTCCCCTCCCGTAAAATCCATCTCGTCGCTCACTCCATCGGGGGATG
GGTCGCGCGAGCATATGTAGGTGAAGTCGCAGACCCCCAAGATGTCCAAA
AACGTTTCGCGTCCCTTACTACACTAGGCTCGCCGAACTACCCCCCTCCA
TCTGGAGAAGGTTTTTTCAGTAATTTGGATCAAACGCGGGGGTTGCTTGA
ATATGTTAATAGTAATTTCCCTGGCTCGTTTCACAAGGGGATGAAGTACG
TGTCGGTGGGGGGAATAGGGACCGAGGGAAGGCTCGGATGGGGATTGGAA
GAGAACGTGGCTTTCATTAGTTATTTGCCGTTGTGTGGGAGGGGGGGGGG
AGGGGGGATGGGATCATCCCTGAGGAGATTGCTTTCTTGGAAGGGGCGGT
GAGGGTGGAGGTGGAAGCGAAGCACTCAGGCTTTATTCCGACGGTGGGAC
CGAGCATTAAGATTCCCGGATACGTGTGGTATGGCACACCAGGGGTGTTG
GAGCAGTGGTTGGTACACTTGCCGGAAAGGAGGAGATGAGATAGAGGGGA
TGAGGGAGAAGAGCCGGAGAGGAGGATCCTTTTGCGTGTATGTACGAGAG
TGTCGACGGTGGTGATCTAGAAAAGAATGAATGTGGCGAGTAATGAAAGA
GA
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Coding sequence (CDS) from alignment at chr1:381641..382892+

>NO01G01500.1 ID=NO01G01500.1|Name=NO01G01500.1|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at chr1:381641..382892+ (Nannochloropsis oceanica)
ATGCCGCCGGTCGTCATGATCTGTCTGAATGCCCTGGCTCTGCTGTCAGT
CCTGCTTCATGCTCCCACCCCGACCCTCGCCTTCCATCTCCCCACCATCA
CAACCACGCCACCATCCCCCCGTACCGATACCGTCGCAATGTCTGCTGTC
TCCTCCTCCGCCGTTTCATCGCTGTCCAAGAACCCCATTGTCATTTTCCC
AGCCCAATTCGGTATTGCCAAAGACTATGAGGAAATGATTGCTGAGCTGA
ATTCTAGAGGGCACCCTGCCTACGCCGTAGACCTCAAGCGGTTTGACTGG
CTCAAGATCACCAAGTCTGCCGTCACTTCAGATTACTGGAAAGGCACTCT
CAAACCCACCGGTACTCTTGACTTTTACTTCGATGCCGTCACCGCCACCA
TCGATCAAGTCAAGGCCGAGTTCCCCTCCCGTAAAATCCATCTCGTCGCT
CACTCCATCGGGGGATGGGTCGCGCGAGCATATGTAGGTGAAGTCGCAGA
CCCCCAAGATGTCCAAAAACGTTTCGCGTCCCTTACTACACTAGGCTCGC
CGAACTACCCCCCTCCATCTGGAGAAGGTTTTTTCAGTAATTTGGATCAA
ACGCGGGGGTTGCTTGAATATGTTAATAGTAATTTCCCTGGCTCGTTTCA
CAAGGGGATGAAGTACGTGTCGGTGGGGGGAATAGGGACCGAGGGAAGGC
TCGGATGGGGATTGGAAGAGAACGTGGCTTTCATTAGTTATTTGCCGTTG
TGTGGGAGGGGGGGGGGAGGGGGGATGGGATCATCCCTGAGGAGATTGCT
TTCTTGGAAGGGGCGGTGA
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Synonyms
Publications