NO01G01420.1, NO01G01420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01420.1
Unique NameNO01G01420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4703
Alignment locationchr1:360594..365484 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:360594..365484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G01420.1 vs.
Match: EWM29096.1 (atp-citrate synthase [Nannochloropsis gaditana])

HSP 1 Score: 2072.7 bits (5369), Expect = 0.000e+0
Identity = 1024/1092 (93.77%), Postives = 1056/1092 (96.70%), Query Frame = 0
Query:    1 MSAKAIREYYGKQLIARWLPEYSNGRHTIEKKQVLITPDVLEPTKGLSFETIADANPWLLTDKLVVKPDQLIKRRGKAGLLAVNKTWQEVQAWVLERMQREVQVEMVKGVLNHFIVEAFVPHKQEEEYYFCIVSNREGEEILFTHEGGVDVGDVDAKALRCQVPLQEQPNPEAIKAALLVHVPAAKQDFLATFLEGVLKLYRALNFAYMEVNPLVVTEDGRVVPLDLAAKIDETASFLCGPHWGHIDFPAPFGRREFPEEAYIRELDSKTGSSLKLTVLNPAGRVWTMVAGGGASVVYADSIADLGQGQELANYGEYSGAPNEQQTFDYARTILSLMTRVKDPRGKVLIIGGGIANFTDVAATFKGIITALRSFQEELREHNITVWVRRAGPNYQEGLRIMRELGTEIQVPIKVYGPETHVTAIVPLALGLEDPKDYPEFDETSTITTVPKPAQSLPNDPADLAPPDAIAPEVT-PSATKHRIVNFTPETRCIVYGLQQRAVQGMLDFDFLCKRKKPSVAAMIFPFSGNHYIKFYWGTEETLIPVYQTTEEAIRRNKDANVVVNFASFRSVHETMMEILRFSDQIKTVAIIAEGVPESQTRDINLVAASKGVGIIGPATVGGIKPGCFRIGNTGGMLDNIVSSKLYRPGSVAYVSKSGGMSNELNNIISRNSDGVYEGVAIGGDRYPGTGFIDMLLRYNDDPAVKMMVLLGEVGGTDEYAVCEALKSKRITKPLVAWCIGTCASIFPYEVQFGHAGACARGMGETAAEKNAALKAAGALVPQTFDKFGHIIREVFDKLVKSRVIVVKPEPEVPKVPLDYTWAKKLGLVRKPANFISSISDDRGDELRYAGMKISEIFEEDLGLGGVVGLLWFRRRLPPYATKFIEMVLMVTADHGPAVSGAHNTIVTARAGKDLVSSLASGLLTIGPRFGGALDDAAQMFTNAHDSGMEPAEFVKMCKTENKLIMGIGHRIKSLANPDARVVLVKEYAKTHFKNCEVLDFALGVEQITTAKRDTLILNVDGCIAVCFVDMLRSCGAFTREEADDLIENGCLNGLFVLGRSIGFIGHYLDQKRLKQPLYRHPWDDITYMQEFS 1092
            MSAKAIREYYGKQLIARWLPEYSNGRHT +KKQVLITPDVLEPTKG SFE IA ANPWLL +KLVVKPDQLIKRRGKAGLLAVNKTW+EVQAW+LERMQREVQVE VKGVLNHFIVEAFVPH Q+EEYYFCIVSNREGEEILFTHEGGVD+GDVDAKALR QVPLQE+PNPEAIKAALLVHVPAAKQDFLATFLEG+LKLYRALNFAYMEVNPLVVT DGRVVPLDLAAKIDETASFLCGP WGH+DFPAPFGRREFPEEAYIRELDSKTG+SLKLTVLNP+GRVWTMVAGGGASVVYADSIADLGQG ELANYGEYSGAPNEQQTFDYARTILSLMTR++DPRGKVLIIGGGIANFTDVAATFKGIITALR+FQEELREHNIT+WVRRAGPNYQEGLRIMRELG EI+VPIKVYGPETHVTAIVPLALGLEDPK+YPEFDETS I+TVPKPAQSLPNDPADLAPPDA+ PEVT PS  KHRI+ F+PETRCIVYGLQQRAVQGMLDFDFLCKRKKPSVAAMIFPFSGNHYIKFYWGTEETLIPVYQTTEEAIRRNKDANVVVNFASFRSVHET MEILRFSDQIKTVAIIAEGVPESQTRDINLVA  KGVGIIGPATVGGIKPGCFRIGNTGGMLDNIV+SKLYRPGSVAYVSKSGGMSNELNNIISRNSDGVYEGVAIGGDRYPGT FIDMLLRYNDDP VKMMVLLGEVGGTDEYAVCEALKSKRITKPLVAWCIGTCASIFPYEVQFGHAGACARGMGETAAEKNAAL+ AGALVP TFDKFG  +RE++DKLVKSRVIV + EPEVPKVPLDYTWAKKLGLVRKPANFISSISDDRGDELRYAGMKISEIFEEDLGLGGVVGLLWFRRRLP YATKFIEMVLMVTADHGPAVSGAHN IVTARAGKDLVSSLASGLLTIGPRFGGALDDAAQMFTNAHDSGMEPAEFVK+CK ENKLIMGIGHRIKSLANPDARVVLVKEYAK HFKN EVLDFALGVEQITT KR+TLILNVDGCIAVCFVDMLRSCGAFTREEA +LIENGCLNGLFVLGRSIGFIGHYLDQ+RLKQPLYRHPWDDITYMQEF+
Sbjct:    1 MSAKAIREYYGKQLIARWLPEYSNGRHTTDKKQVLITPDVLEPTKGQSFEVIAQANPWLLKEKLVVKPDQLIKRRGKAGLLAVNKTWEEVQAWILERMQREVQVEQVKGVLNHFIVEAFVPHSQDEEYYFCIVSNREGEEILFTHEGGVDIGDVDAKALRIQVPLQEEPNPEAIKAALLVHVPAAKQDFLATFLEGILKLYRALNFAYMEVNPLVVTGDGRVVPLDLAAKIDETASFLCGPQWGHVDFPAPFGRREFPEEAYIRELDSKTGASLKLTVLNPSGRVWTMVAGGGASVVYADSIADLGQGHELANYGEYSGAPNEQQTFDYARTILSLMTRMQDPRGKVLIIGGGIANFTDVAATFKGIITALRAFQEELREHNITIWVRRAGPNYQEGLRIMRELGQEIRVPIKVYGPETHVTAIVPLALGLEDPKNYPEFDETSGISTVPKPAQSLPNDPADLAPPDAVEPEVTIPS--KHRIIPFSPETRCIVYGLQQRAVQGMLDFDFLCKRKKPSVAAMIFPFSGNHYIKFYWGTEETLIPVYQTTEEAIRRNKDANVVVNFASFRSVHETTMEILRFSDQIKTVAIIAEGVPESQTRDINLVAQGKGVGIIGPATVGGIKPGCFRIGNTGGMLDNIVASKLYRPGSVAYVSKSGGMSNELNNIISRNSDGVYEGVAIGGDRYPGTSFIDMLLRYNDDPDVKMMVLLGEVGGTDEYAVCEALKSKRITKPLVAWCIGTCASIFPYEVQFGHAGACARGMGETAAEKNAALREAGALVPPTFDKFGEAVREIYDKLVKSRVIVPRAEPEVPKVPLDYTWAKKLGLVRKPANFISSISDDRGDELRYAGMKISEIFEEDLGLGGVVGLLWFRRRLPAYATKFIEMVLMVTADHGPAVSGAHNAIVTARAGKDLVSSLASGLLTIGPRFGGALDDAAQMFTNAHDSGMEPAEFVKVCKNENKLIMGIGHRIKSLANPDARVVLVKEYAKKHFKNTEVLDFALGVEQITTKKRETLILNVDGCIAVCFVDMLRSCGAFTREEAGELIENGCLNGLFVLGRSIGFIGHYLDQRRLKQPLYRHPWDDITYMQEFA 1090          
The following BLAST results are available for this feature:
BLAST of NO01G01420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29096.10.000e+093.77atp-citrate synthase [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01420NO01G01420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01420.1NO01G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01420.1.cds1NO01G01420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01420.1.cds2NO01G01420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01420.1 ID=NO01G01420.1|Name=NO01G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=4703bp
CTTGGGAGAAGGGCCTGGTATGGCAGCTCGAAGAAAGCTTCTGATGTGGA
CCGAAGACCTCAGTCATCGGTTTCATCTCCTTGCTTGCCTTCTCGTGCCC
TCATGTCCTTCGACGCCTTTGTCTTACACCACACGCGCTGGGACCCAGGC
CCTTGTCTTTCGGCTGCGCATGTGTTTGTACGCTGTCTGTCCAATTAGGG
CAAGAAGGAGCAAGCCGTTGTGTCGGTTGCTCCGGTTCTGCCCTGGTTTG
ACGATTGACGGCTTTGTGGCTCTCATCGAAGATCGTTGCGTTGCGTTTGT
CTTTGGGTCTTCCGCGTGCCGAAGAGCCGAAACAGCTCCATGCACTTCAC
ACACATACACACAGGCCCCCTCTCCTTTTTCAAAGCAAGCTGAAGAGAGT
TGAGCCAAAGCTGCGGGGTGCGATGCCACAAGAACCCCAAGACACGGCGC
ACCCCGAGGCTCCTCATTTTCTTGGCGATCGCTTTCCAGTGGCTTCCGTC
GAAGGGATCGTCGGAGCCAGCAGCACTTCCACTGCAAGAATGGTTGGAGC
TACTGGGGCTGTAGACACGGAGTTGCACAGGCGTGTGCAGCATGCCTTTG
TCTTGACGGCCGTGGCCCGTTTTGACCCTCGGTCGTTCCTCGCCGCTCAC
TAATTTCGATCAAACGTCTACGTCGCACATCCACTCTCTTTCTTTCTCCG
CCCAACACACGATCACAGTGCAACAAGGACAAGAGGCAGTCCCTTCCCTC
TTCTTTTCCTTCTTCATCGTCTTCCTACATACTCGCACTCGATCATGTCG
GCTAAGGCCATCCGCGAGTATTACGGCAAGCAGCTCATCGCCCGCTGGCT
CCCGGAGTACAGCAATGGCCGGCACACCATCGAGAAGAAGCAGGTCCTGA
TCACCCCCGACGTGCTGGAGCCCACCAAGGGGCTGAGCTTCGAGACCATC
GCCGACGCCAACCCGTGGCTGCTCACGGACAAGTTGGTGGTGAAGCCTGA
CCAGCTCATCAAACGTCGTGGCAAGGCTGGCCTCCTGGCCGTGAACAAGA
CGTGGCAGGAAGTCCAGGCCTGGGTGCTGGAGCGGATGCAGCGCGAGGTG
CAGGTGGAGATGGTCAAGGGTGTGCTCAACCACTTTATTGTTGAGGCCTT
TGTTCCCCACAAGCAAGAGGAGGAGTACTACTTCTGCATCGTCTCCAACC
GGGAAGGAGAGGAGATCCTCTTCACGCATGAAGGAGGGGTGGACGTCGGT
GATGTGGATGCCAAAGCGCTTCGATGCCAGGTGCCCCTGCAGGAACAACC
CAATCCCGAGGCGATCAAGGCCGCGTTGCTGGTGCATGTGCCGGCGGCGA
AGCAGGATTTCCTGGCCACGTTCTTGGAGGGGGTGCTCAAGCTGTACCGG
GCGTTGAACTTTGCTTACATGGAGGTGAACCCTTTGGTGGTGACTGAGGA
TGGGCGCGTTGTGCCTTTGGATCTTGCGGCTAAGATCGATGAGACGGCGT
CTTTCTTGTGTGGCCCTCACTGGGGACACATCGATTTCCCTGCTCCCTTC
GGCCGACGAGAGTTCCCCGAGGAAGCGTACATCCGTGAGTTGGACAGCAA
GACGGGCTCGTCCTTGAAGCTGACGGTGCTGAACCCAGCGGGGAGGGTGT
GGACGATGGTGGCAGGGGGAGGGGCCTCCGTTGTGTACGCGGATTCGATT
GCTGATCTAGGGCAGGGACAGGAGCTGGCTAACTATGGTGAATACTCTGG
AGCGCCGAATGAGCAGCAGACGTTTGATTATGCCCGGACGATTTTGAGCT
TGATGACGCGGGTGAAGGACCCCAGGGGGAAGGTATTGATAATTGGTGGG
GGTATTGCGAATTTCACTGATGTGGCGGCGACGTTCAAGGGGATTATCAC
AGCGTTGCGTTCATTCCAAGAGGAGTTGAGGGAGCATAATATTACGGTTT
GGGTGCGACGGGCGGGGCCGAATTACCAGGAGGGTTTGCGTATTATGAGG
GAGCTGGGGACTGAGATCCAGGTGCCGATCAAGGTGTACGGTCCTGAAAC
GCACGTGACGGCGATTGTCCCCCTGGCGTTGGGGTTGGAGGATCCGAAAG
ACTACCCGGAGTTTGACGAGACTTCTACGATCACCACTGTGCCCAAGCCC
GCGCAGTCCTTGCCGAACGATCCTGCGGATTTGGCACCGCCCGATGCGAT
CGCTCCTGAGGTAACCCCGTCTGCGACCAAGCACCGCATTGTGAACTTCA
CGCCTGAGACGAGGTGCATTGTCTATGGATTGCAGCAGCGGGCGGTCCAG
GGCATGTTGGACTTTGATTTTCTGTGCAAGCGGAAGAAGCCTTCGGTGGC
CGCCATGATTTTCCCGTTTTCTGGCAACCATTACATAAAGTTTTACTGGG
GGACGGAGGAGACTTTGATTCCTGTGTACCAGACGACGGAGGAAGCGATT
CGCCGAAACAAGGATGCGAATGTGGTGGTGAACTTCGCATCTTTCCGCTC
GGTGCATGAGACGATGATGGAGATCCTCCGCTTTTCGGATCAGATTAAGA
CGGTCGCGATTATCGCGGAGGGTGTTCCAGAGAGCCAGACCAGGGACATT
AACTTGGTGGCGGCGAGTAAGGGGGTGGGGATTATTGGCCCGGCGACGGT
GGGTGGCATCAAGCCAGGGTGTTTTAGGATTGGGAACACGGGAGGCATGC
TTGATAATATTGTGTCATCGAAGCTGTACCGGCCGGGGTCGGTAGCGTAC
GTGAGTAAGAGTGGGGGGATGAGCAATGAGTTGAACAACATAATTTCGAG
GAATTCGGATGGAGTGTATGAGGGGGTGGCGATTGGTGGGGATCGGTATC
CAGGGACGGGTTTCATTGATATGCTGTTGAGGTATAATGATGACCCAGCC
GTGAAGATGATGGTCTTACTGGGCGAGGTAGGAGGCACAGATGAGTACGC
GGTGTGTGAGGCGTTGAAGAGCAAGCGGATCACGAAGCCGTTGGTTGCCT
GGTGCATTGGCACGTGTGCCTCCATTTTCCCGTATGAAGTGCAGTTTGGT
CATGCCGGGGCTTGTGCGCGGGGGATGGGCGAGACAGCTGCGGAGAAGAA
CGCGGCATTGAAGGCGGCGGGGGCGTTGGTGCCTCAGACGTTCGATAAGT
TTGGACATATCATTCGGGAGGTGTTTGATAAGCTTGTCAAGTCGCGAGTG
ATCGTCGTGAAGCCCGAGCCAGAAGTCCCCAAGGTGCCTTTGGATTATAC
GTGGGCCAAAAAACTGGGTTTGGTCCGTAAGCCGGCGAATTTTATTTCGT
CCATCTCTGATGATCGTGGGGATGAGTTGCGGTATGCGGGCATGAAGATT
AGTGAGATTTTCGAGGAAGACTTGGGTTTAGGGGGGGTGGTGGGCTTGCT
GTGGTTCAGGCGTCGGTTGCCGCCGTATGCGACCAAGTTTATTGAGATGG
TGTTGATGGTGACGGCAGACCATGGTCCTGCGGTGTCGGGGGCGCACAAT
ACCATCGTGACGGCACGGGCAGGGAAGGATTTGGTGTCCAGTTTGGCTTC
GGGACTGTTGACCATCGGACCGAGGTTTGGGGGCGCCTTGGATGATGCCG
CACAGATGTTTACGAATGCCCATGATTCGGGGATGGAACCGGCGGAGTTT
GTCAAGATGTGCAAGACTGAGAATAAGCTTATTATGGGTATTGGACATCG
TATTAAATCTCTGGCGAACCCTGATGCACGCGTCGTGTTGGTGAAGGAGT
ACGCGAAGACGCATTTCAAAAATTGCGAGGTTTTGGACTTTGCCTTGGGG
GTGGAGCAGATTACCACCGCGAAGCGTGATACGTTGATTCTGAATGTAGA
TGGGTGTATCGCTGTGTGTTTTGTGGATATGCTCCGCAGCTGTGGGGCGT
TTACCCGGGAGGAGGCGGATGACTTGATTGAAAACGGCTGTTTGAATGGT
CTGTTTGTCCTGGGTCGCAGCATTGGTTTTATTGGTCACTATCTGGATCA
GAAGAGGCTTAAGCAACCCTTGTATCGGCATCCCTGGGACGATATCACGT
ACATGCAGGAGTTCTCTTAAGCGGCGGTGCCCTTGGCCGCGTAGAATGGC
AGAGGAGGAGGGTAAATAGGGTGACAGCCTTGGCTTGACCGTGATTGGAC
CGGGCGAAGGAGGGGAAGAGGGAATTCCGACGGCACCGAGCGCGTCTTTT
TTGCATTATCACCACAATTTACATGTGCTTGTAGGAGTTTAGCCAGACAG
GAGAGATGGGAAGATGGAGGAAAGAAGGAACGGTTTGATTTGTGTTTTTA
TCATGACGATGGCGCAGTGACATAAAAGAGAGATGACAGCATTTGGAGAG
GAGCAGGACGGGGAGAGGGTGTAATGCTGTATGGTGGAGTGGCGAGGGAG
ATCGAGATCTAAACGCAGAAGACAAGAAGAGAGCGAGTACATCTGATTTT
TAACGCAAGGGACGGAAAGAGCGGGGAATCCATTCTTGCACAAAAAAGGG
TAGAAGAGCAAAATAGGAAGATGTGGTGGTATACGCACCTTGATGTGTGG
AAATGGTGGGAGAAAACACAAGTAGGTAGAAAAGCGGGAAGATCAAAGAG
TCAGCTTTTGGGGGTTGTGAAGCAAAAGCTTTCAATCGTACCAAGAGAGA
AGAGAAACCAAAAGAAGAAAAAAGAACAGCTCAAGGGTGTAAAGTGTAAT
CGC
back to top

protein sequence of NO01G01420.1

>NO01G01420.1-protein ID=NO01G01420.1-protein|Name=NO01G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1092bp
MSAKAIREYYGKQLIARWLPEYSNGRHTIEKKQVLITPDVLEPTKGLSFE
TIADANPWLLTDKLVVKPDQLIKRRGKAGLLAVNKTWQEVQAWVLERMQR
EVQVEMVKGVLNHFIVEAFVPHKQEEEYYFCIVSNREGEEILFTHEGGVD
VGDVDAKALRCQVPLQEQPNPEAIKAALLVHVPAAKQDFLATFLEGVLKL
YRALNFAYMEVNPLVVTEDGRVVPLDLAAKIDETASFLCGPHWGHIDFPA
PFGRREFPEEAYIRELDSKTGSSLKLTVLNPAGRVWTMVAGGGASVVYAD
SIADLGQGQELANYGEYSGAPNEQQTFDYARTILSLMTRVKDPRGKVLII
GGGIANFTDVAATFKGIITALRSFQEELREHNITVWVRRAGPNYQEGLRI
MRELGTEIQVPIKVYGPETHVTAIVPLALGLEDPKDYPEFDETSTITTVP
KPAQSLPNDPADLAPPDAIAPEVTPSATKHRIVNFTPETRCIVYGLQQRA
VQGMLDFDFLCKRKKPSVAAMIFPFSGNHYIKFYWGTEETLIPVYQTTEE
AIRRNKDANVVVNFASFRSVHETMMEILRFSDQIKTVAIIAEGVPESQTR
DINLVAASKGVGIIGPATVGGIKPGCFRIGNTGGMLDNIVSSKLYRPGSV
AYVSKSGGMSNELNNIISRNSDGVYEGVAIGGDRYPGTGFIDMLLRYNDD
PAVKMMVLLGEVGGTDEYAVCEALKSKRITKPLVAWCIGTCASIFPYEVQ
FGHAGACARGMGETAAEKNAALKAAGALVPQTFDKFGHIIREVFDKLVKS
RVIVVKPEPEVPKVPLDYTWAKKLGLVRKPANFISSISDDRGDELRYAGM
KISEIFEEDLGLGGVVGLLWFRRRLPPYATKFIEMVLMVTADHGPAVSGA
HNTIVTARAGKDLVSSLASGLLTIGPRFGGALDDAAQMFTNAHDSGMEPA
EFVKMCKTENKLIMGIGHRIKSLANPDARVVLVKEYAKTHFKNCEVLDFA
LGVEQITTAKRDTLILNVDGCIAVCFVDMLRSCGAFTREEADDLIENGCL
NGLFVLGRSIGFIGHYLDQKRLKQPLYRHPWDDITYMQEFS*
back to top

mRNA from alignment at chr1:360594..365484+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01420.1 ID=NO01G01420.1|Name=NO01G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=4891bp|location=Sequence derived from alignment at chr1:360594..365484+ (Nannochloropsis oceanica)
CTTGGGAGAAGGGCCTGGTATGGCAGCTCGAAGAAAGCTTCTGATGTGGA CCGAAGACCTCAGTCATCGGTTTCATCTCCTTGCTTGCCTTCTCGTGCCC TCATGTCCTTCGACGCCTTTGTCTTACACCACACGCGCTGGGACCCAGGC CCTTGTCTTTCGGCTGCGCATGTGTTTGTACGCTGTCTGTCCAATTAGGG CAAGAAGGAGCAAGCCGTTGTGTCGGTTGCTCCGGTTCTGCCCTGGTTTG ACGATTGACGGCTTTGTGGCTCTCATCGAAGATCGTTGCGTTGCGTTTGT CTTTGGGTCTTCCGCGTGCCGAAGAGCCGAAACAGCTCCATGCACTTCAC ACACATACACACAGGCCCCCTCTCCTTTTTCAAAGCAAGCTGAAGAGAGT TGAGCCAAAGCTGCGGGGTGCGATGCCACAAGAACCCCAAGACACGGCGC ACCCCGAGGCTCCTCATTTTCTTGGCGATCGCTTTCCAGTGGCTTCCGTC GAAGGGATCGTCGGAGCCAGCAGCACTTCCACTGCAAGAATGGTTGGAGC TACTGGGGCTGTAGACACGGAGTTGCACAGGCGTGTGCAGCATGCCTTTG TCTTGACGGCCGTGGCCCGTTTTGACCCTCGGTCGTTCCTCGCCGCTCAC TAATTTCGATCAAACGTCTACGTCGCACATCCACTCTCTTTCTTTCTCCG CCCAACACACGATCACAGTGCAACAAGGACAAGAGGCAGTCCCTTCCCTC TTCTTTTCCTTCTTCATCGTCTTCCTACATACTCGCACTCGATCATGTCG GCTAAGGCCATCCGCGAGTATTACGGCAAGCAGCTCATCGCCCGCTGGCT CCCGGAGTACAGCAATGGCCGGCACACCATCGAGAAGAAGCAGGTCCTGA TCACCCCCGACGTGCTGGAGCCCACCAAGGGGCTGAGCTTCGAGACCATC GCCGACGCCAACCCGTGGCTGCTCACGGACAAGTTGGTGGTGAAGCCTGA CCAGCTCATCAAACGTCGTGGCAAGGCTGGCCTCCTGGCCGTGAACAAGA CGTGGCAGGAAGTCCAGGCCTGGGTGCTGGAGCGGATGCAGCGCGAGGTG CAGGTGGAGATGGTCAAGGGTGTGCTCAACCACTTTATTGTTGAGGCCTT TGTTCCCCACAAGCAAGAGGAGGAGTACTACTTCTGCATCGTCTCCAACC GGGAAGGAGAGGAGATCCTCTTCACGCATGAAGGAGGGGTGGACGTCGGT GATGTGGATGCCAAAGCGCTTCGATGCCAGGTGCCCCTGCAGGAACAACC CAATCCCGAGGCGATCAAGGCCGCGTTGCTGGTGCATGTGCCGGCGGCGA AGCAGGATTTCCTGGCCACGTTCTTGGAGGGGGTGCTCAAGCTGTACCGG GCGTTGAACTTTGCTTACATGGAGGTGAACCCTTTGGTGGTGACTGAGGA TGGGCGCGTTGTGCCTTTGGATCTTGCGGCTAAGATCGATGAGACGGCGT CTTTCTTGTGTGGCCCTCACTGGGGACACATCGATTTCCCTGCTCCCTTC GGCCGACGAGAGTTCCCCGAGGAAGCGTACATCCGTGAGTTGGACAGCAA GACGGGCTCGTCCTTGAAGCTGACGGTGCTGAACCCAGCGGGGAGGGTGT GGACGATGGTGGCAGGGGGAGGGGCCTCCGTTGTGTACGCGGATTCGATT GCTGATCTAGGGCAGGGACAGGAGCTGGCTAACTATGGTGAATACTCTGG AGCGCCGAATGAGCAGCAGACGTTTGATTATGCCCGGACGATTTTGAGCT TGATGACGCGGGTGAAGGACCCCAGGGGGAAGGTATTGATAATTGGTGGG GGTATTGCGAATTTCACTGATGTGGCGGCGACGTTCAAGGGGATTATCAC AGCGTTGCGTTCATTCCAAGAGGAGTTGAGGGAGCATAATATTACGGTTT GGGTGCGACGGGCGGGGCCGAATTACCAGGAGGGTTTGCGTATTATGAGG GAGCTGGGGACTGAGATCCAGGTGCCGATCAAGGTGTACGGTCCTGAAAC GCACGTGACGGCGATTGTCCCCCTGGCGTTGGGGTTGGAGGATCCGAAAG ACTACCCGGAGTTTGACGAGACTTCTACGATCACCACTGTGCCCAAGCCC GCGCAGTCCTTGCCGAACGATCCTGCGGATTTGGCACCGCCCGATGCGAT CGCTCCTGAGGTAACCCCGTCTGCGACCAAGCACCGCATTGTGAACTTCA CGCCTGAGACGAGGTGCATTGTCTATGGATTGCAGCAGCGGGCGGTCCAG GGCATGTTGGACTTTGATTTTCTGTGCAAGCGGAAGAAGCCTTCGGTGGC CGCCATGATTTTCCCGTTTTCTGGCAACCATTACATAAAGTTTTACTGGG GGACGGAGGAGACTTTGATTCCTGTGTACCAGACGACGGAGGAAGCGATT CGCCGAAACAAGGATGCGAATGTGGTGGTGAACTTCGCATCTTTCCGCTC GGTGCATGAGACGATGATGGAGATCCTCCGCTTTTCGGATCAGATTAAGA CGGTCGCGATTATCGCGGAGGGTGTTCCAGAGAGCCAGACCAGGGACATT AACTTGGTGGCGGCGAGTAAGGGGGTGGGGATTATTGGCCCGGCGACGGT GGGTGGCATCAAGCCAGGGTGTTTTAGGATTGGGAACACGGGAGGCATGC TTGATAATATTGTGTCATCGAAGCTGTACCGGCCGGGGTCGGTAGCGTAC GTGAGTAAGAGTGGGGGGATGAGCAATGAGTTGAACAACATAATTTCGAG GAATTCGGATGGAGTGTATGAGGGGGTGGCGATTGGTGGGGATCGGTATC CAGGGACGGGTTTCATTGATATGCTGTTGAGGTATAATGATGACCCAGCC GTGAAGATGATGGTCTTACTGGGCGAGGTAGGAGGCACAGATGAGTACGC GGTGTGTGAGGCGTTGAAGAGCAAGCGGATCACGAAGCCGTTGGTTGCCT GGTGCATTGGCACGTGTGCCTCCATTTTCCCGTATGAAGTGCAGTTTGGT CATGCCGGGGCTTGTGCGCGGGGGATGGGCGAGACAGCTGCGGAGAAGAA CGCGGCATTGAAGGCGGCGGGGGCGTTGGTGCCTCAGACGTTCGATAAGT TTGGACATATCATTCGGGAGGTGTTTGATAAGCTTGTCAAGTCGCGAGTG ATCGTCGTGAAGCCCGAGCCAGAAGTCCCCAAGGTGCCTTTGGATTATAC GTGGGCCAAAAAACTGGGTTTGGTCCGTAAGCCGGCGAATTTTATTTCGT CCATCTCTGATGATCGTGGGGATGAGTTGCGGTATGCGGGCATGAAGATT AGTGAGATTTTCGAGGAAGACTTGGGTTTAGGGGGGGTGGTGGGCTTGCT GTGGTTCAGGCGTCGGTTGCCGCCGTATGCGACCAAGTTTATTGAGATGG TGTTGATGGTGACGGCAGACCATGGTCCTGCGGTGTCGGGGGCGCACAAT ACCATCGTGACGGCACGGGCAGGGAAGGATTTGGTGTCCAGTTTGGCTTC GGGACTGTTGACCATCGGACCGAGGTTTGGGGGCGCCTTGGATGATGCCG CACAGATGTTTACGAATGCCCATGATTCGGGGATGGAACCGGCGGAGTTT GTCAAGATGTGCAAGACTGAGAATAAGCTTATTATGGGTATTGGACATCG TATTAAATCTCTGGCGAACCCTGATGCACGCGTCGTGTTGGTGAAGGAGT ACGCGAAGACGCATTTCAAAAATTGCGAGGTTTTGGACTTTGCCTTGGGG GTGGAGCAGATTACCACCGCGAAGCGTGATACGTTGATTCTGAATGTAGA TGGGTGTATCGCTGTGTGTTTTGTGGATATGCTCCGCAGCTGTGGGGCGT TTACCCGGGAGGAGGCGGATGACTTGATTGAAAACGGCTGTTTGAATGGT CTGTTTGTCCTGGGTCGCAGCATTGGTTTTATTGGTCACTATCTGGATCA GAAGAGGCTTAAGCAACCCTTGTATCGGCATCCCTGGGTATGTACATCGA GCAAGGAGGGGGAGGGAAGGGAGGGGCTGTCTTCTTCCTGTGTGCTTCAG GGCGGATGATTTTTAGGGGGCATTTTGGGGGGTTTTCCGGGGGTTTTTTT CTTTCCTTCTCACTCTCTTCTCTTCCCCCCCCCCCCCTTCCCCCCCACAA ACATACCCACCCAACTATCCCATAGGACGATATCACGTACATGCAGGAGT TCTCTTAAGCGGCGGTGCCCTTGGCCGCGTAGAATGGCAGAGGAGGAGGG TAAATAGGGTGACAGCCTTGGCTTGACCGTGATTGGACCGGGCGAAGGAG GGGAAGAGGGAATTCCGACGGCACCGAGCGCGTCTTTTTTGCATTATCAC CACAATTTACATGTGCTTGTAGGAGTTTAGCCAGACAGGAGAGATGGGAA GATGGAGGAAAGAAGGAACGGTTTGATTTGTGTTTTTATCATGACGATGG CGCAGTGACATAAAAGAGAGATGACAGCATTTGGAGAGGAGCAGGACGGG GAGAGGGTGTAATGCTGTATGGTGGAGTGGCGAGGGAGATCGAGATCTAA ACGCAGAAGACAAGAAGAGAGCGAGTACATCTGATTTTTAACGCAAGGGA CGGAAAGAGCGGGGAATCCATTCTTGCACAAAAAAGGGTAGAAGAGCAAA ATAGGAAGATGTGGTGGTATACGCACCTTGATGTGTGGAAATGGTGGGAG AAAACACAAGTAGGTAGAAAAGCGGGAAGATCAAAGAGTCAGCTTTTGGG GGTTGTGAAGCAAAAGCTTTCAATCGTACCAAGAGAGAAGAGAAACCAAA AGAAGAAAAAAGAACAGCTCAAGGGTGTAAAGTGTAATCGC
back to top

Coding sequence (CDS) from alignment at chr1:360594..365484+

>NO01G01420.1 ID=NO01G01420.1|Name=NO01G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=3276bp|location=Sequence derived from alignment at chr1:360594..365484+ (Nannochloropsis oceanica)
ATGTCGGCTAAGGCCATCCGCGAGTATTACGGCAAGCAGCTCATCGCCCG
CTGGCTCCCGGAGTACAGCAATGGCCGGCACACCATCGAGAAGAAGCAGG
TCCTGATCACCCCCGACGTGCTGGAGCCCACCAAGGGGCTGAGCTTCGAG
ACCATCGCCGACGCCAACCCGTGGCTGCTCACGGACAAGTTGGTGGTGAA
GCCTGACCAGCTCATCAAACGTCGTGGCAAGGCTGGCCTCCTGGCCGTGA
ACAAGACGTGGCAGGAAGTCCAGGCCTGGGTGCTGGAGCGGATGCAGCGC
GAGGTGCAGGTGGAGATGGTCAAGGGTGTGCTCAACCACTTTATTGTTGA
GGCCTTTGTTCCCCACAAGCAAGAGGAGGAGTACTACTTCTGCATCGTCT
CCAACCGGGAAGGAGAGGAGATCCTCTTCACGCATGAAGGAGGGGTGGAC
GTCGGTGATGTGGATGCCAAAGCGCTTCGATGCCAGGTGCCCCTGCAGGA
ACAACCCAATCCCGAGGCGATCAAGGCCGCGTTGCTGGTGCATGTGCCGG
CGGCGAAGCAGGATTTCCTGGCCACGTTCTTGGAGGGGGTGCTCAAGCTG
TACCGGGCGTTGAACTTTGCTTACATGGAGGTGAACCCTTTGGTGGTGAC
TGAGGATGGGCGCGTTGTGCCTTTGGATCTTGCGGCTAAGATCGATGAGA
CGGCGTCTTTCTTGTGTGGCCCTCACTGGGGACACATCGATTTCCCTGCT
CCCTTCGGCCGACGAGAGTTCCCCGAGGAAGCGTACATCCGTGAGTTGGA
CAGCAAGACGGGCTCGTCCTTGAAGCTGACGGTGCTGAACCCAGCGGGGA
GGGTGTGGACGATGGTGGCAGGGGGAGGGGCCTCCGTTGTGTACGCGGAT
TCGATTGCTGATCTAGGGCAGGGACAGGAGCTGGCTAACTATGGTGAATA
CTCTGGAGCGCCGAATGAGCAGCAGACGTTTGATTATGCCCGGACGATTT
TGAGCTTGATGACGCGGGTGAAGGACCCCAGGGGGAAGGTATTGATAATT
GGTGGGGGTATTGCGAATTTCACTGATGTGGCGGCGACGTTCAAGGGGAT
TATCACAGCGTTGCGTTCATTCCAAGAGGAGTTGAGGGAGCATAATATTA
CGGTTTGGGTGCGACGGGCGGGGCCGAATTACCAGGAGGGTTTGCGTATT
ATGAGGGAGCTGGGGACTGAGATCCAGGTGCCGATCAAGGTGTACGGTCC
TGAAACGCACGTGACGGCGATTGTCCCCCTGGCGTTGGGGTTGGAGGATC
CGAAAGACTACCCGGAGTTTGACGAGACTTCTACGATCACCACTGTGCCC
AAGCCCGCGCAGTCCTTGCCGAACGATCCTGCGGATTTGGCACCGCCCGA
TGCGATCGCTCCTGAGGTAACCCCGTCTGCGACCAAGCACCGCATTGTGA
ACTTCACGCCTGAGACGAGGTGCATTGTCTATGGATTGCAGCAGCGGGCG
GTCCAGGGCATGTTGGACTTTGATTTTCTGTGCAAGCGGAAGAAGCCTTC
GGTGGCCGCCATGATTTTCCCGTTTTCTGGCAACCATTACATAAAGTTTT
ACTGGGGGACGGAGGAGACTTTGATTCCTGTGTACCAGACGACGGAGGAA
GCGATTCGCCGAAACAAGGATGCGAATGTGGTGGTGAACTTCGCATCTTT
CCGCTCGGTGCATGAGACGATGATGGAGATCCTCCGCTTTTCGGATCAGA
TTAAGACGGTCGCGATTATCGCGGAGGGTGTTCCAGAGAGCCAGACCAGG
GACATTAACTTGGTGGCGGCGAGTAAGGGGGTGGGGATTATTGGCCCGGC
GACGGTGGGTGGCATCAAGCCAGGGTGTTTTAGGATTGGGAACACGGGAG
GCATGCTTGATAATATTGTGTCATCGAAGCTGTACCGGCCGGGGTCGGTA
GCGTACGTGAGTAAGAGTGGGGGGATGAGCAATGAGTTGAACAACATAAT
TTCGAGGAATTCGGATGGAGTGTATGAGGGGGTGGCGATTGGTGGGGATC
GGTATCCAGGGACGGGTTTCATTGATATGCTGTTGAGGTATAATGATGAC
CCAGCCGTGAAGATGATGGTCTTACTGGGCGAGGTAGGAGGCACAGATGA
GTACGCGGTGTGTGAGGCGTTGAAGAGCAAGCGGATCACGAAGCCGTTGG
TTGCCTGGTGCATTGGCACGTGTGCCTCCATTTTCCCGTATGAAGTGCAG
TTTGGTCATGCCGGGGCTTGTGCGCGGGGGATGGGCGAGACAGCTGCGGA
GAAGAACGCGGCATTGAAGGCGGCGGGGGCGTTGGTGCCTCAGACGTTCG
ATAAGTTTGGACATATCATTCGGGAGGTGTTTGATAAGCTTGTCAAGTCG
CGAGTGATCGTCGTGAAGCCCGAGCCAGAAGTCCCCAAGGTGCCTTTGGA
TTATACGTGGGCCAAAAAACTGGGTTTGGTCCGTAAGCCGGCGAATTTTA
TTTCGTCCATCTCTGATGATCGTGGGGATGAGTTGCGGTATGCGGGCATG
AAGATTAGTGAGATTTTCGAGGAAGACTTGGGTTTAGGGGGGGTGGTGGG
CTTGCTGTGGTTCAGGCGTCGGTTGCCGCCGTATGCGACCAAGTTTATTG
AGATGGTGTTGATGGTGACGGCAGACCATGGTCCTGCGGTGTCGGGGGCG
CACAATACCATCGTGACGGCACGGGCAGGGAAGGATTTGGTGTCCAGTTT
GGCTTCGGGACTGTTGACCATCGGACCGAGGTTTGGGGGCGCCTTGGATG
ATGCCGCACAGATGTTTACGAATGCCCATGATTCGGGGATGGAACCGGCG
GAGTTTGTCAAGATGTGCAAGACTGAGAATAAGCTTATTATGGGTATTGG
ACATCGTATTAAATCTCTGGCGAACCCTGATGCACGCGTCGTGTTGGTGA
AGGAGTACGCGAAGACGCATTTCAAAAATTGCGAGGTTTTGGACTTTGCC
TTGGGGGTGGAGCAGATTACCACCGCGAAGCGTGATACGTTGATTCTGAA
TGTAGATGGGTGTATCGCTGTGTGTTTTGTGGATATGCTCCGCAGCTGTG
GGGCGTTTACCCGGGAGGAGGCGGATGACTTGATTGAAAACGGCTGTTTG
AATGGTCTGTTTGTCCTGGGTCGCAGCATTGGTTTTATTGGTCACTATCT
GGATCAGAAGAGGCTTAAGCAACCCTTGTATCGGCATCCCTGGGACGATA
TCACGTACATGCAGGAGTTCTCTTAA
back to top
Synonyms
Publications