NO01G01400.1, NO01G01400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01400.1
Unique NameNO01G01400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length569
Alignment locationchr1:357622..358406 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:357622..358406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01400.1 vs.
Match: EWM29085.1 (Prefoldin [Nannochloropsis gaditana])

HSP 1 Score: 208.0 bits (528), Expect = 2.200e-50
Identity = 114/157 (72.61%), Postives = 127/157 (80.89%), Query Frame = 0 
Query:    1 MSTTGVMRQIDSPNSSSSSSSGGISGGGSGNAPADDSPDVEVRKADQEMINEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAFVEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGNSINLESS 158
            MSTTGVMR+++                G    P D++PDVEVRK DQEMINEFGRLNN+Y+ELDEDL  LKEQLEKLDDAVTELMVGVGGPVRL LGEAF++VSEDYATE+CERKQEQLQA+VEELG EK  IA RQMELKK LYGRFG+SINLE+S
Sbjct:    1 MSTTGVMREVNPSQDK-----------GKAKTP-DEAPDVEVRKEDQEMINEFGRLNNQYLELDEDLAYLKEQLEKLDDAVTELMVGVGGPVRLSLGEAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQMELKKVLYGRFGSSINLENS 145
The following BLAST results are available for this feature:
BLAST of NO01G01400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29085.12.200e-5072.61Prefoldin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01400NO01G01400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01400.1NO01G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01400.1.cds1NO01G01400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01400.1.cds2NO01G01400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01400.1 ID=NO01G01400.1|Name=NO01G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=569bp
ACATGACACAGACATGAGCACAACAGGTGTGATGCGACAAATTGACTCAC
CCAACAGCAGCAGCAGCAGCAGCAGCGGCGGTATAAGTGGTGGAGGGAGC
GGGAATGCGCCGGCGGACGATAGCCCAGACGTGGAAGTGCGGAAAGCAGA
CCAGGAGATGATCAATGAATTTGGACGCCTCAACAACAAATACATTGAGC
TGGACGAGGATTTGACGGGTCTCAAGGAGCAACTGGAGAAGCTCGACGAC
GCCGTCACAGAGCTGATGGTGGGAGTAGGTGGACCCGTGCGGCTTTTGTT
AGGAGAGGCCTTTGTGGAGGTATCAGAAGATTATGCCACAGAGTATTGCG
AACGAAAACAGGAGCAGTTACAAGCACGGGTGGAGGAGCTCGGGGCGGAG
AAGGAAGGGATTGCGGCCCGGCAGATGGAGTTAAAGAAGGCGTTGTATGG
ACGATTTGGGAATTCGATCAATTTGGAAAGTTCGTGAAGGATGGAAGGAG
GCTTGGGGTAAGGGAGGATGGAAGAATGAAGAAATTACGATGATGGAAGA
AAGCGAGAAATGAAAGTCT
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protein sequence of NO01G01400.1

>NO01G01400.1-protein ID=NO01G01400.1-protein|Name=NO01G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MSTTGVMRQIDSPNSSSSSSSGGISGGGSGNAPADDSPDVEVRKADQEMI
NEFGRLNNKYIELDEDLTGLKEQLEKLDDAVTELMVGVGGPVRLLLGEAF
VEVSEDYATEYCERKQEQLQARVEELGAEKEGIAARQMELKKALYGRFGN
SINLESS*
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mRNA from alignment at chr1:357622..358406-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01400.1 ID=NO01G01400.1|Name=NO01G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=785bp|location=Sequence derived from alignment at chr1:357622..358406- (Nannochloropsis oceanica)
ACATGACACAGACATGAGCACAACAGGTGTGATGCGACAAATTGACTCAC
CCAACAGCAGCAGCAGCAGCAGCAGCGGCGGTATAAGTGGTGGAGGGAGC
GGGAATGCGCCGGCGGACGATAGCCCAGACGTGGAAGTGCGGAAAGCAGA
CCAGGAGATGATCAATGAATTTGGACGCCTCAACAACAAATACATTGAGC
TGGACGAGGATTTGACGGGTCTCAAGGTACGTGCGATGATGTGGGAGAAG
ATTGGGAGCAGAGCGCTGGGCTCTCTTCGTTGTTTTTCGGCTTTCGTTCA
AGGCTCCGGTGGTCCTCCATTCTGCTATTGACCAGCACCAGCTTCAGCTT
TATCGTTCGTAGGCGTTTCCCTGTTTTTTTCCTCACGAACACTCCTCCGG
CTACCTTTTTTTTACCTATTTAAACACCCTCCTGTCAAATAGGAGCAACT
GGAGAAGCTCGACGACGCCGTCACAGAGCTGATGGTGGGAGTAGGTGGAC
CCGTGCGGCTTTTGTTAGGAGAGGCCTTTGTGGAGGTATCAGAAGATTAT
GCCACAGAGTATTGCGAACGAAAACAGGAGCAGTTACAAGCACGGGTGGA
GGAGCTCGGGGCGGAGAAGGAAGGGATTGCGGCCCGGCAGATGGAGTTAA
AGAAGGCGTTGTATGGACGATTTGGGAATTCGATCAATTTGGAAAGTTCG
TGAAGGATGGAAGGAGGCTTGGGGTAAGGGAGGATGGAAGAATGAAGAAA
TTACGATGATGGAAGAAAGCGAGAAATGAAAGTCT
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Coding sequence (CDS) from alignment at chr1:357622..358406-

>NO01G01400.1 ID=NO01G01400.1|Name=NO01G01400.1|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at chr1:357622..358406- (Nannochloropsis oceanica)
ATGAGCACAACAGGTGTGATGCGACAAATTGACTCACCCAACAGCAGCAG
CAGCAGCAGCAGCGGCGGTATAAGTGGTGGAGGGAGCGGGAATGCGCCGG
CGGACGATAGCCCAGACGTGGAAGTGCGGAAAGCAGACCAGGAGATGATC
AATGAATTTGGACGCCTCAACAACAAATACATTGAGCTGGACGAGGATTT
GACGGGTCTCAAGGAGCAACTGGAGAAGCTCGACGACGCCGTCACAGAGC
TGATGGTGGGAGTAGGTGGACCCGTGCGGCTTTTGTTAGGAGAGGCCTTT
GTGGAGGTATCAGAAGATTATGCCACAGAGTATTGCGAACGAAAACAGGA
GCAGTTACAAGCACGGGTGGAGGAGCTCGGGGCGGAGAAGGAAGGGATTG
CGGCCCGGCAGATGGAGTTAAAGAAGGCGTTGTATGGACGATTTGGGAAT
TCGATCAATTTGGAAAGTTCGTGA
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Synonyms
Publications