NO01G01380.1, NO01G01380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01380.1
Unique NameNO01G01380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length829
Alignment locationchr1:354837..355777 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:354837..355777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01380.1 vs.
Match: EWM29047.1 (hypothetical protein Naga_100024g20 [Nannochloropsis gaditana])

HSP 1 Score: 63.9 bits (154), Expect = 2.900e-7
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 0 
Query:    5 IPPSTATAVASAAITAGRKGRLAQAFGKMTVACPAQIRAYGACISAK 52
            +P S+A  VASAA +  RKGRLAQ FG+MTVACP +IRAYGACI+A+
Sbjct:    3 VPSSSAANVASAAASHARKGRLAQVFGRMTVACPGEIRAYGACIAAR 49
The following BLAST results are available for this feature:
BLAST of NO01G01380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29047.12.900e-768.09hypothetical protein Naga_100024g20 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01380NO01G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01380.1NO01G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01380.1.cds1NO01G01380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01380.1.cds2NO01G01380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01380.1 ID=NO01G01380.1|Name=NO01G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=829bp
CTTGATTTGGCCCGCAAACGCGCTATGTAGATAGGGTATGAAGGGAGAAG
GGAGTGTTTGGAAGGAGGGGTCAGGTCATGATGATTATGATGCCTCGGCT
CCCTTTTAACCCTCAAGTCAAGCCAAGTCACGCATTACGGCAAGCATAAA
GAGAATGCAATATCTGTACGTGTGTGTAGCGTGGGAAGTAGGGACAGGGT
GAGTGAATGACCAGCAAAGGCTGGGGCCATTGAAGGCAAGCAAAGAGAAG
GCTTTTGCATGTCTCGCCGAGGGTGGGGGTGAGACTTGCGCTTCGCTTGC
CATTTGCTGGTCAAAGCACCATTTTAAACGACTCCAACATACTCACGATA
CCAGTTACACTACTACAGGAAAGGAGCAGCTTGCTTCATCGCCGCTGCCC
CCGGACTGTCTTCGAGGAATTTTGATCAGCTACAAAGCCCCTCCTCCTCC
CACCTGCACTCCAGAAGGACACGTCATGCCTTCCGCCATCCCGCCCTCCA
CTGCCACTGCCGTCGCATCTGCAGCAATCACCGCAGGGCGCAAAGGCCGT
CTTGCACAGGCCTTTGGCAAGATGACGGTGGCGTGCCCAGCGCAGATCCG
TGCGTATGGCGCATGTATCTCGGCCAAGCTAGAAGCAGGAGCACAAGGGG
TAGAACGTGGGGAATGCGAGGCTGAATTTGCGGCGCTGCGGACATGCTTC
CAGACCCAGCTGCAGGCCCTTCGAAAAAGCGGCGGAAGAAAGTTTTAAAT
ATAAGGAAAGCTAACAAGGGACATGAATTAAGTACTTATATAAATAGAAA
TAAAGTCAAACTGAAAGATATGAATGGCA
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protein sequence of NO01G01380.1

>NO01G01380.1-protein ID=NO01G01380.1-protein|Name=NO01G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MPSAIPPSTATAVASAAITAGRKGRLAQAFGKMTVACPAQIRAYGACISA
KLEAGAQGVERGECEAEFAALRTCFQTQLQALRKSGGRKF*
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mRNA from alignment at chr1:354837..355777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01380.1 ID=NO01G01380.1|Name=NO01G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=941bp|location=Sequence derived from alignment at chr1:354837..355777- (Nannochloropsis oceanica)
CTTGATTTGGCCCGCAAACGCGCTATGTAGATAGGGTATGAAGGGAGAAG
GGAGTGTTTGGAAGGAGGGGTCAGGTCATGATGATTATGATGCCTCGGCT
CCCTTTTAACCCTCAAGTCAAGCCAAGTCACGCATTACGGCAAGCATAAA
GAGAATGCAATATCTGTACGTGTGTGTAGCGTGGGAAGTAGGGACAGGGT
GAGTGAATGACCAGCAAAGGCTGGGGCCATTGAAGGCAAGCAAAGAGAAG
GCTTTTGCATGTCTCGCCGAGGGTGGGGGTGAGACTTGCGCTTCGCTTGC
CATTTGCTGGTCAAAGCACCATTTTAAACGACTCCAACATACTCACGATA
CCAGTTACACTACTACAGGAAAGGAGCAGCTTGCTTCATCGCCGCTGCCC
CCGGACTGTCTTCGAGGAATTTTGATCAGCTACAAAGCCCCTCCTCCTCC
CACCTGCACTCCAGAAGGACACGTCATGCCTTCCGCCATCCCGCCCTCCA
CTGCCACTGCCGTCGCATCTGCAGCAATCACCGCAGGGCGCAAAGGCCGT
CTTGCACAGGCCTTTGGCAAGATGACGGTGGCGTGCCCAGCGCAGGTACA
GAGAGAGGATGGGGAGCAGGAGGGGAGGTTTGGGAGGTCGACACGTAATT
CTCGTATCTCCTTCGATAAGCTAACAGGCGTGCACACACTCTATCATCAT
ACCATAGATCCGTGCGTATGGCGCATGTATCTCGGCCAAGCTAGAAGCAG
GAGCACAAGGGGTAGAACGTGGGGAATGCGAGGCTGAATTTGCGGCGCTG
CGGACATGCTTCCAGACCCAGCTGCAGGCCCTTCGAAAAAGCGGCGGAAG
AAAGTTTTAAATATAAGGAAAGCTAACAAGGGACATGAATTAAGTACTTA
TATAAATAGAAATAAAGTCAAACTGAAAGATATGAATGGCA
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Coding sequence (CDS) from alignment at chr1:354837..355777-

>NO01G01380.1 ID=NO01G01380.1|Name=NO01G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at chr1:354837..355777- (Nannochloropsis oceanica)
ATGCCTTCCGCCATCCCGCCCTCCACTGCCACTGCCGTCGCATCTGCAGC
AATCACCGCAGGGCGCAAAGGCCGTCTTGCACAGGCCTTTGGCAAGATGA
CGGTGGCGTGCCCAGCGCAGATCCGTGCGTATGGCGCATGTATCTCGGCC
AAGCTAGAAGCAGGAGCACAAGGGGTAGAACGTGGGGAATGCGAGGCTGA
ATTTGCGGCGCTGCGGACATGCTTCCAGACCCAGCTGCAGGCCCTTCGAA
AAAGCGGCGGAAGAAAGTTTTAA
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Synonyms
Publications