NO01G01340.1, NO01G01340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01340.1
Unique NameNO01G01340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length774
Alignment locationchr1:340782..341996 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:340782..341996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01340.1 vs.
Match: EWM29086.1 (3-oxoacyl-(acyl-carrier-protein) reductase [Nannochloropsis gaditana])

HSP 1 Score: 406.4 bits (1043), Expect = 6.700e-110
Identity = 207/258 (80.23%), Postives = 228/258 (88.37%), Query Frame = 0 
Query:    1 MASHP-STEEAATKKIAIVTGAAGTLGESITRMLLDEGYLVAALDNRTEGLAGLRTRLDDKADRLHPFTVDISSAPAVEEVCHTILTRFGAVSVLVNNAGLLSKNKCVETNLAEWRRVIHVNLDGAFFLSQQLLPCMRLMHYGRIVNITSMAAKTGGVTAGTAYAVSKGALSSLTFSLARETARDGITVNGIAPAYVKTPMVMDQLTEEQREQVLANIPVGRFCEAEEVAHTVRFLISPLAGFITGELIDQNGGYHMD 258
            MASH  +T+E A +K+A+VTGAAGTLGESIT MLL EGY+VAALD R EGL+  +  LD K+D+ H F VDISSA AVEEVC TILTR GAVSVL+NNAGLLS +KCV+T+L EW RV+HVN+DGAF LSQQLLPCMR MH+GRIVNITSMAAKTGGVTAGTAYAVSKGAL+SLTFSLARETA DGITVNG+APAYVKTPMVM QL EEQR QVL +IPVGRFCE EEVAHTVRFLISPLAGFITGE+IDQNGGYHMD
Sbjct:    1 MASHHLTTQEHARRKVAVVTGAAGTLGESITGMLLSEGYVVAALDIRAEGLSAFKATLDKKSDQYHAFAVDISSASAVEEVCRTILTRLGAVSVLINNAGLLSNHKCVQTSLTEWHRVMHVNVDGAFLLSQQLLPCMRSMHFGRIVNITSMAAKTGGVTAGTAYAVSKGALASLTFSLARETAGDGITVNGVAPAYVKTPMVMQQLREEQRVQVLNSIPVGRFCEPEEVAHTVRFLISPLAGFITGEIIDQNGGYHMD 258
The following BLAST results are available for this feature:
BLAST of NO01G01340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29086.16.700e-11080.233-oxoacyl-(acyl-carrier-protein) reductase [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01340NO01G01340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01340.1NO01G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01340.1.cds1NO01G01340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01340.1.cds2NO01G01340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01340.1.cds3NO01G01340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01340.1.cds4NO01G01340.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01340.1 ID=NO01G01340.1|Name=NO01G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=774bp
ATGGCGTCCCACCCCTCAACTGAGGAGGCGGCCACCAAGAAGATAGCCAT
CGTGACAGGTGCCGCTGGAACGTTGGGAGAATCCATCACTCGCATGCTAC
TTGACGAGGGGTATCTCGTAGCTGCCCTGGATAATAGGACCGAGGGCCTG
GCGGGATTGAGAACTCGCCTCGACGACAAAGCCGATCGTCTCCATCCCTT
TACTGTTGATATCTCGTCCGCCCCGGCGGTTGAGGAAGTGTGCCACACCA
TCCTCACTCGCTTCGGGGCTGTCTCTGTCCTGGTGAACAATGCAGGCTTG
CTCTCCAAAAACAAGTGTGTCGAAACCAACCTTGCAGAATGGCGTCGCGT
TATACACGTTAACCTCGATGGAGCGTTTTTCCTCTCGCAGCAGCTGCTCC
CATGCATGCGCTTGATGCACTACGGGCGGATCGTAAACATAACATCCATG
GCGGCGAAGACTGGGGGAGTCACAGCAGGCACGGCATACGCCGTCAGCAA
AGGGGCTTTGAGTAGTCTAACATTTTCCTTGGCAAGAGAAACGGCGCGCG
ACGGCATCACCGTGAATGGGATTGCGCCTGCGTACGTCAAGACGCCCATG
GTTATGGACCAGCTGACGGAAGAGCAACGTGAGCAAGTGCTTGCTAACAT
TCCGGTGGGAAGATTTTGTGAAGCGGAGGAGGTGGCTCATACCGTCCGGT
TTTTAATCTCGCCGTTGGCGGGCTTTATCACCGGGGAGTTGATTGACCAG
AATGGGGGATATCACATGGATTGA
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protein sequence of NO01G01340.1

>NO01G01340.1-protein ID=NO01G01340.1-protein|Name=NO01G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MASHPSTEEAATKKIAIVTGAAGTLGESITRMLLDEGYLVAALDNRTEGL
AGLRTRLDDKADRLHPFTVDISSAPAVEEVCHTILTRFGAVSVLVNNAGL
LSKNKCVETNLAEWRRVIHVNLDGAFFLSQQLLPCMRLMHYGRIVNITSM
AAKTGGVTAGTAYAVSKGALSSLTFSLARETARDGITVNGIAPAYVKTPM
VMDQLTEEQREQVLANIPVGRFCEAEEVAHTVRFLISPLAGFITGELIDQ
NGGYHMD*
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mRNA from alignment at chr1:340782..341996-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01340.1 ID=NO01G01340.1|Name=NO01G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp|location=Sequence derived from alignment at chr1:340782..341996- (Nannochloropsis oceanica)
ATGGCGTCCCACCCCTCAACTGAGGAGGCGGCCACCAAGAAGGTGCGTTC
ACCAAAGGAGGAGGGGGAATGGGGAGGTTGGGTTATATTGTCAGGTCACA
GTCCATTCATCATCCGTTGCACACAAGCATGAGGCAAGTACGCCTTTGAT
CGCAATCAGCGGCCATCCGTCACTCAATGGAGCTTTTTGTAAGCGTCTGC
CTGCGTAGTCCCCCCTAAGTTCTACCCCAGCGCTCACCCCTTTCGACCTC
CCCAACACAGATAGCCATCGTGACAGGTGCCGCTGGAACGTTGGGAGAAT
CCATCACTCGCATGCTACTTGACGAGGGGTATCTCGTAGCTGCCCTGGAT
AATAGGACCGAGGGCCTGGCGGGATTGAGAACTCGCCTCGACGACAAAGC
CGATCGTCTCCATCCCTTTACTGTTGATATCTCGTCCGCCCCGGCGGTTG
AGGAAGTGTGCCACACCATCCTCACTCGCTTCGGGGCTGTCTCTGTCCTG
GTGAACAATGCAGGCTTGCTCTCCAAAAACAAGTGTGTCGAAACCAACCT
TGCAGAATGGCGTCGCGTTATACACGTTAACCTCGATGGAGCGTTTTTCC
TCTCGCAGCAGCTGCTCCCATGCATGCGCTTGATGCACTACGGGCGGATC
GTAAACATAACATCCATGGCGGCGAAGACTGGGGGAGTCACAGCAGGCAC
GGCATACGCCGTCAGCAAAGGGGCTTTGAGTAGTCTAACATTTTCCTTGG
CAAGAGAAACGGTAAGAGATCTACACCTGGCGTTATTGAGAGAGAAATCG
CACACAAAGTTGCCCCCCTTCCTGCCTCTTTCATGCTTCCCTTGCCTAGG
CGCGCGACGGCATCACCGTGAATGGGATTGCGCCTGCGTACGTCAAGACG
CCCATGGTTATGGACCAGCTGACGGAAGAGCAACGTGAGCAAGTGCTTGC
TAACATTCCGGTGGGAAGATTTTGTGAAGCGGAGGAGGTGGCTCATACCG
TCCGGTTTTTAATCTCGCCGTTGGCGGGCTTTATCACCGGGGAGGTAGGT
AGGTAGGTTGGAAGGGAGGGGAGGGACGGGAAACGTGACTTGTAATTTTA
TCCCGTCACGTTTACGGCCTTTATCGATTATTACGTCCCGCTCTCAATGC
TTCTTTCCCACCCTCCTTCAAACATACAGTTGATTGACCAGAATGGGGGA
TATCACATGGATTGA
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Coding sequence (CDS) from alignment at chr1:340782..341996-

>NO01G01340.1 ID=NO01G01340.1|Name=NO01G01340.1|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at chr1:340782..341996- (Nannochloropsis oceanica)
ATGGCGTCCCACCCCTCAACTGAGGAGGCGGCCACCAAGAAGATAGCCAT
CGTGACAGGTGCCGCTGGAACGTTGGGAGAATCCATCACTCGCATGCTAC
TTGACGAGGGGTATCTCGTAGCTGCCCTGGATAATAGGACCGAGGGCCTG
GCGGGATTGAGAACTCGCCTCGACGACAAAGCCGATCGTCTCCATCCCTT
TACTGTTGATATCTCGTCCGCCCCGGCGGTTGAGGAAGTGTGCCACACCA
TCCTCACTCGCTTCGGGGCTGTCTCTGTCCTGGTGAACAATGCAGGCTTG
CTCTCCAAAAACAAGTGTGTCGAAACCAACCTTGCAGAATGGCGTCGCGT
TATACACGTTAACCTCGATGGAGCGTTTTTCCTCTCGCAGCAGCTGCTCC
CATGCATGCGCTTGATGCACTACGGGCGGATCGTAAACATAACATCCATG
GCGGCGAAGACTGGGGGAGTCACAGCAGGCACGGCATACGCCGTCAGCAA
AGGGGCTTTGAGTAGTCTAACATTTTCCTTGGCAAGAGAAACGGCGCGCG
ACGGCATCACCGTGAATGGGATTGCGCCTGCGTACGTCAAGACGCCCATG
GTTATGGACCAGCTGACGGAAGAGCAACGTGAGCAAGTGCTTGCTAACAT
TCCGGTGGGAAGATTTTGTGAAGCGGAGGAGGTGGCTCATACCGTCCGGT
TTTTAATCTCGCCGTTGGCGGGCTTTATCACCGGGGAGTTGATTGACCAG
AATGGGGGATATCACATGGATTGA
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Synonyms
Publications