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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr1 | genome | chr1:330932..333209 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01300.1 vs.
Match: EWM29090.1 (Kinetochore protein Nuf2 [Nannochloropsis gaditana]) HSP 1 Score: 771.2 bits (1990), Expect = 2.100e-219 Identity = 424/507 (83.63%), Postives = 461/507 (90.93%), Query Frame = 0
Query: 1 MSWNDSRQSLGPRASMGPRPSMGPRASIGGRQQQQPVQAFSFPILKTPDILQCMHELQVRLTEAEINEADKHRDSIRRAYEHLVEICTGITKEEMSQPAFSGINALNYPELHEESIPELAFFRACTKMMTVCGVHDFSMKDLLAPEPKRVRRHLSAIINFAKFREERLVMYSELAVKRDQLLDTLKRLQDEEVGVSKELGALREQAAEENEEMEGLERECEIAEAELDQLNKRQAEIRAQGGELKKQSQELKESIGKVTVVLEGAIEERERTRGQIVRSPERVRRELAKAGEEVEMEKKEGLIAERDAREMHLRVQAVQKGEKEVGKAIKSIEDVEVELNKQKAASKELKDATRNVQGNRQKVVETKQEMENLKRQASRYEERLAHLRRSGKAKDEALEEAGREAQAELLAVEKVRRAHQGAVEESEGEVARKMAELEGEKGENSLRVSEMVGALKTLNETVAEHQQRLRDTLGDATNTPLAGASVVTNTPILSRLSM-AAAARKGG 507
MSWNDSRQSLGPRASMGPRPSMGPRAS+GGRQQ VQAFSFPILKTPDILQCMHELQVRLTEAEINEADKHRD+IRRAYE+LVEICTGITKEEMSQPAFSGINALNYPELHEESIPELAFFRACTKMMTVCGVHDFSMKDLL+PEPKRVRRHLSAIINFAKFREERLVMYSELAVKRD+LLD LKRLQDEEVGV+KELG LREQAA E+EEMEGLE+ CE+AEAEL+QLNKRQAEIRAQG ELKKQSQ+LKESIGK + LE IEERE+TRGQIVRSPERVRRELA A EEVE EKKEGL ERDAREMHLRVQAVQKGEKEVGKAIK++E++E E+ K K ASKELKDAT+NVQGNRQ+V+E QEMENLKRQASR+E+R HLR+SGKAKDEALE AG+EAQA+LLAVEKVRRAHQ A +ESE +VAR AE+EGEK EN+ R +EMV ALK+L+ETVAEHQQ LR+ LGD TN PL A+ ++TPILSRLSM AAAARK G
Sbjct: 1 MSWNDSRQSLGPRASMGPRPSMGPRASLGGRQQS--VQAFSFPILKTPDILQCMHELQVRLTEAEINEADKHRDAIRRAYEYLVEICTGITKEEMSQPAFSGINALNYPELHEESIPELAFFRACTKMMTVCGVHDFSMKDLLSPEPKRVRRHLSAIINFAKFREERLVMYSELAVKRDELLDNLKRLQDEEVGVAKELGVLREQAAAESEEMEGLEQACEVAEAELEQLNKRQAEIRAQGAELKKQSQDLKESIGKASSALESGIEEREKTRGQIVRSPERVRRELASAAEEVETEKKEGLATERDAREMHLRVQAVQKGEKEVGKAIKALEEIEGEMAKVKLASKELKDATKNVQGNRQRVLEAAQEMENLKRQASRFEDRWTHLRKSGKAKDEALEVAGKEAQAQLLAVEKVRRAHQQAADESEADVARVTAEVEGEKQENAARCAEMVEALKSLSETVAEHQQGLREALGDTTNAPLPSAA--SSTPILSRLSMVAAAARKEG 503
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01300.1 ID=NO01G01300.1|Name=NO01G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2090bp
GCGGGCGGCTGCTTATGGAAGAAAGGAGAGCTTGCTTTGAACGGATCGGA
GCACTTTGGCACGCTTCAGGCGCGGAAGCAGTTTGCATTCCTTGGCCTCT
TTCCGATCGCCTCTTCCCAAACAAACTATCAAGCAAACACGTTGTGCATC
GACCCAGTGCATGATAAATTGTGTATAATGCGCCATGGCATCAGACATCA
TTGTTGGGCATGCTGCTCTGGCGAAGCCCATTATTCCTTGCCTGCTTATC
ATCATTGCGGTCCGTCTCGTTAACTTTTCCTCTCATTCCATCTCCGCGAC
ATAGGCACACACCACCATCTCCATCACTGCCACTACATCCACAACGCACG
CATTGCCATGAGCTGGAACGACTCCCGGCAAAGCTTGGGCCCGCGTGCCT
CGATGGGGCCTCGTCCTAGCATGGGTCCCCGGGCAAGCATCGGCGGCCGG
CAGCAGCAGCAGCCAGTCCAAGCCTTCTCATTTCCCATCCTCAAGACCCC
TGATATTTTGCAGTGCATGCACGAACTGCAGGTGCGCTTGACGGAGGCGG
AGATTAATGAGGCAGACAAGCATCGGGACTCCATTCGACGGGCATACGAG
CATTTGGTGGAGATTTGCACAGGCATCACCAAGGAAGAAATGAGCCAGCC
GGCCTTCAGTGGTATTAACGCCCTCAACTACCCCGAGCTGCACGAGGAAT
CCATCCCCGAACTCGCCTTCTTCCGTGCATGTACCAAAATGATGACTGTG
TGTGGTGTGCATGACTTTAGCATGAAAGACCTCCTTGCCCCGGAGCCGAA
GCGAGTGAGGAGGCACTTGAGCGCTATCATTAACTTTGCCAAGTTCCGAG
AGGAGCGTCTGGTGATGTATTCGGAGCTGGCTGTGAAAAGGGATCAATTA
CTCGATACCCTCAAGAGGCTCCAGGACGAGGAGGTGGGGGTGAGCAAGGA
ACTCGGTGCCTTGCGGGAGCAGGCGGCGGAAGAAAACGAGGAGATGGAGG
GTTTGGAAAGGGAGTGCGAGATCGCAGAGGCGGAGCTTGACCAACTGAAT
AAACGGCAAGCAGAAATAAGAGCGCAGGGCGGGGAGTTGAAGAAACAGAG
TCAAGAGCTGAAGGAGAGCATTGGGAAGGTTACTGTAGTGTTGGAGGGAG
CGATCGAGGAGAGGGAGAGGACGAGGGGCCAGATAGTCCGTAGCCCCGAG
AGGGTGAGGAGGGAGCTGGCCAAGGCGGGGGAGGAGGTGGAGATGGAGAA
GAAGGAGGGATTGATTGCAGAGAGGGATGCGAGGGAGATGCATTTGAGGG
TGCAGGCGGTGCAAAAGGGAGAGAAGGAGGTGGGGAAGGCGATCAAGTCG
ATCGAAGACGTGGAGGTGGAGTTGAACAAGCAGAAGGCGGCGAGCAAGGA
GCTGAAGGACGCGACGAGGAATGTGCAAGGGAACCGACAGAAGGTGGTGG
AAACGAAACAGGAAATGGAGAACCTGAAGAGGCAGGCGTCCAGGTACGAA
GAGCGGCTGGCGCACTTGCGGAGGTCGGGGAAGGCCAAGGACGAGGCTTT
GGAGGAGGCAGGGAGGGAGGCACAGGCCGAGCTGCTGGCTGTGGAGAAGG
TGCGGAGGGCGCACCAGGGAGCAGTGGAGGAGAGCGAAGGAGAAGTGGCA
CGAAAGATGGCGGAGCTGGAGGGGGAGAAGGGGGAGAACAGCTTGAGGGT
GAGTGAGATGGTGGGGGCACTCAAGACGCTGAACGAGACTGTGGCGGAGC
ACCAGCAACGGTTGAGGGATACGTTAGGGGACGCGACGAATACGCCGTTG
GCTGGGGCCAGTGTGGTGACCAATACCCCGATTTTGAGCCGCTTGTCGAT
GGCGGCGGCGGCCAGAAAGGGGGGGGAGAGTGGGGGAATGGGGGGAGGGA
TGATGAAGCCAGTGCTCTAGAGTGGGACCGAGGGAGGGACAGGATGTGTG
TGTGTGTGTGTGGGCGCGCGCAGGGATGAAGGACACTGCAAGATAAGGCG
GAAAAAGAGGCTTACGGAGGATGAAACGGATTAACGCACAGTAGCCGGGT
GTAAGTGTGCGTGACTGTAGGAGTGACAGGAGGGAGGGAG back to topprotein sequence of NO01G01300.1 >NO01G01300.1-protein ID=NO01G01300.1-protein|Name=NO01G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MSWNDSRQSLGPRASMGPRPSMGPRASIGGRQQQQPVQAFSFPILKTPDI
LQCMHELQVRLTEAEINEADKHRDSIRRAYEHLVEICTGITKEEMSQPAF
SGINALNYPELHEESIPELAFFRACTKMMTVCGVHDFSMKDLLAPEPKRV
RRHLSAIINFAKFREERLVMYSELAVKRDQLLDTLKRLQDEEVGVSKELG
ALREQAAEENEEMEGLERECEIAEAELDQLNKRQAEIRAQGGELKKQSQE
LKESIGKVTVVLEGAIEERERTRGQIVRSPERVRRELAKAGEEVEMEKKE
GLIAERDAREMHLRVQAVQKGEKEVGKAIKSIEDVEVELNKQKAASKELK
DATRNVQGNRQKVVETKQEMENLKRQASRYEERLAHLRRSGKAKDEALEE
AGREAQAELLAVEKVRRAHQGAVEESEGEVARKMAELEGEKGENSLRVSE
MVGALKTLNETVAEHQQRLRDTLGDATNTPLAGASVVTNTPILSRLSMAA
AARKGGESGGMGGGMMKPVL* back to topmRNA from alignment at chr1:330932..333209- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01300.1 ID=NO01G01300.1|Name=NO01G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2278bp|location=Sequence derived from alignment at chr1:330932..333209- (Nannochloropsis oceanica)
GCGGGCGGCTGCTTATGGAAGAAAGGAGAGCTTGCTTTGAACGGATCGGA
GCACTTTGGCACGCTTCAGGCGCGGAAGCAGTTTGCATTCCTTGGCCTCT
TTCCGATCGCCTCTTCCCAAACAAACTATCAAGCAAACACGTTGTGCATC
GACCCAGTGCATGATAAATTGTGTATAATGCGCCATGGCATCAGACATCA
TTGTTGGGCATGCTGCTCTGGCGAAGCCCATTATTCCTTGCCTGCTTATC
ATCATTGCGGTCCGTCTCGTTAACTTTTCCTCTCATTCCATCTCCGCGAC
ATAGGCACACACCACCATCTCCATCACTGCCACTACATCCACAACGCACG
CATTGCCATGAGCTGGAACGACTCCCGGCAAAGCTTGGGCCCGCGTGCCT
CGATGGGGCCTCGTCCTAGCATGGGTCCCCGGGCAAGCATCGGCGGCCGG
CAGCAGCAGCAGCCAGTCCAAGCCTTCTCATTTCCCATCCTCAAGACCCC
TGATATTTTGCAGTGCATGCACGAACTGCAGGTGCGCTTGACGGAGGCGG
AGATTAATGAGGCAGACAAGCATCGGGACTCCATTCGACGGGCATACGAG
CATTTGGTGGAGATTTGCACAGGTGCGTAGGATGACGGTGGCGTTCGAAG
CTCTGGGGTGTTTCTCCCTCCCCTGCCGCCTCCCTCCTTCCCGCGTGTCT
CCCTGGTCATCCCCACTGCCTCTCGACCTGCCCTTCTCTATGATCCACAA
TGCTACTTTTGACGTATTTCCCCTTCCCCGCCCATCCCTCCCCTCCTACT
TGCGACCAAGGCATCACCAAGGAAGAAATGAGCCAGCCGGCCTTCAGTGG
TATTAACGCCCTCAACTACCCCGAGCTGCACGAGGAATCCATCCCCGAAC
TCGCCTTCTTCCGTGCATGTACCAAAATGATGACTGTGTGTGGTGTGCAT
GACTTTAGCATGAAAGACCTCCTTGCCCCGGAGCCGAAGCGAGTGAGGAG
GCACTTGAGCGCTATCATTAACTTTGCCAAGTTCCGAGAGGAGCGTCTGG
TGATGTATTCGGAGCTGGCTGTGAAAAGGGATCAATTACTCGATACCCTC
AAGAGGCTCCAGGACGAGGAGGTGGGGGTGAGCAAGGAACTCGGTGCCTT
GCGGGAGCAGGCGGCGGAAGAAAACGAGGAGATGGAGGGTTTGGAAAGGG
AGTGCGAGATCGCAGAGGCGGAGCTTGACCAACTGAATAAACGGCAAGCA
GAAATAAGAGCGCAGGGCGGGGAGTTGAAGAAACAGAGTCAAGAGCTGAA
GGAGAGCATTGGGAAGGTTACTGTAGTGTTGGAGGGAGCGATCGAGGAGA
GGGAGAGGACGAGGGGCCAGATAGTCCGTAGCCCCGAGAGGGTGAGGAGG
GAGCTGGCCAAGGCGGGGGAGGAGGTGGAGATGGAGAAGAAGGAGGGATT
GATTGCAGAGAGGGATGCGAGGGAGATGCATTTGAGGGTGCAGGCGGTGC
AAAAGGGAGAGAAGGAGGTGGGGAAGGCGATCAAGTCGATCGAAGACGTG
GAGGTGGAGTTGAACAAGCAGAAGGCGGCGAGCAAGGAGCTGAAGGACGC
GACGAGGAATGTGCAAGGGAACCGACAGAAGGTGGTGGAAACGAAACAGG
AAATGGAGAACCTGAAGAGGCAGGCGTCCAGGTACGAAGAGCGGCTGGCG
CACTTGCGGAGGTCGGGGAAGGCCAAGGACGAGGCTTTGGAGGAGGCAGG
GAGGGAGGCACAGGCCGAGCTGCTGGCTGTGGAGAAGGTGCGGAGGGCGC
ACCAGGGAGCAGTGGAGGAGAGCGAAGGAGAAGTGGCACGAAAGATGGCG
GAGCTGGAGGGGGAGAAGGGGGAGAACAGCTTGAGGGTGAGTGAGATGGT
GGGGGCACTCAAGACGCTGAACGAGACTGTGGCGGAGCACCAGCAACGGT
TGAGGGATACGTTAGGGGACGCGACGAATACGCCGTTGGCTGGGGCCAGT
GTGGTGACCAATACCCCGATTTTGAGCCGCTTGTCGATGGCGGCGGCGGC
CAGAAAGGGGGGGGAGAGTGGGGGAATGGGGGGAGGGATGATGAAGCCAG
TGCTCTAGAGTGGGACCGAGGGAGGGACAGGATGTGTGTGTGTGTGTGTG
GGCGCGCGCAGGGATGAAGGACACTGCAAGATAAGGCGGAAAAAGAGGCT
TACGGAGGATGAAACGGATTAACGCACAGTAGCCGGGTGTAAGTGTGCGT
GACTGTAGGAGTGACAGGAGGGAGGGAG back to topCoding sequence (CDS) from alignment at chr1:330932..333209- >NO01G01300.1 ID=NO01G01300.1|Name=NO01G01300.1|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr1:330932..333209- (Nannochloropsis oceanica)
ATGAGCTGGAACGACTCCCGGCAAAGCTTGGGCCCGCGTGCCTCGATGGG
GCCTCGTCCTAGCATGGGTCCCCGGGCAAGCATCGGCGGCCGGCAGCAGC
AGCAGCCAGTCCAAGCCTTCTCATTTCCCATCCTCAAGACCCCTGATATT
TTGCAGTGCATGCACGAACTGCAGGTGCGCTTGACGGAGGCGGAGATTAA
TGAGGCAGACAAGCATCGGGACTCCATTCGACGGGCATACGAGCATTTGG
TGGAGATTTGCACAGGCATCACCAAGGAAGAAATGAGCCAGCCGGCCTTC
AGTGGTATTAACGCCCTCAACTACCCCGAGCTGCACGAGGAATCCATCCC
CGAACTCGCCTTCTTCCGTGCATGTACCAAAATGATGACTGTGTGTGGTG
TGCATGACTTTAGCATGAAAGACCTCCTTGCCCCGGAGCCGAAGCGAGTG
AGGAGGCACTTGAGCGCTATCATTAACTTTGCCAAGTTCCGAGAGGAGCG
TCTGGTGATGTATTCGGAGCTGGCTGTGAAAAGGGATCAATTACTCGATA
CCCTCAAGAGGCTCCAGGACGAGGAGGTGGGGGTGAGCAAGGAACTCGGT
GCCTTGCGGGAGCAGGCGGCGGAAGAAAACGAGGAGATGGAGGGTTTGGA
AAGGGAGTGCGAGATCGCAGAGGCGGAGCTTGACCAACTGAATAAACGGC
AAGCAGAAATAAGAGCGCAGGGCGGGGAGTTGAAGAAACAGAGTCAAGAG
CTGAAGGAGAGCATTGGGAAGGTTACTGTAGTGTTGGAGGGAGCGATCGA
GGAGAGGGAGAGGACGAGGGGCCAGATAGTCCGTAGCCCCGAGAGGGTGA
GGAGGGAGCTGGCCAAGGCGGGGGAGGAGGTGGAGATGGAGAAGAAGGAG
GGATTGATTGCAGAGAGGGATGCGAGGGAGATGCATTTGAGGGTGCAGGC
GGTGCAAAAGGGAGAGAAGGAGGTGGGGAAGGCGATCAAGTCGATCGAAG
ACGTGGAGGTGGAGTTGAACAAGCAGAAGGCGGCGAGCAAGGAGCTGAAG
GACGCGACGAGGAATGTGCAAGGGAACCGACAGAAGGTGGTGGAAACGAA
ACAGGAAATGGAGAACCTGAAGAGGCAGGCGTCCAGGTACGAAGAGCGGC
TGGCGCACTTGCGGAGGTCGGGGAAGGCCAAGGACGAGGCTTTGGAGGAG
GCAGGGAGGGAGGCACAGGCCGAGCTGCTGGCTGTGGAGAAGGTGCGGAG
GGCGCACCAGGGAGCAGTGGAGGAGAGCGAAGGAGAAGTGGCACGAAAGA
TGGCGGAGCTGGAGGGGGAGAAGGGGGAGAACAGCTTGAGGGTGAGTGAG
ATGGTGGGGGCACTCAAGACGCTGAACGAGACTGTGGCGGAGCACCAGCA
ACGGTTGAGGGATACGTTAGGGGACGCGACGAATACGCCGTTGGCTGGGG
CCAGTGTGGTGACCAATACCCCGATTTTGAGCCGCTTGTCGATGGCGGCG
GCGGCCAGAAAGGGGGGGGAGAGTGGGGGAATGGGGGGAGGGATGATGAA
GCCAGTGCTCTAG back to top
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