NO01G01200.1, NO01G01200.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G01200.1
Unique Name	NO01G01200.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2350
Alignment location	chr1:312691..315040 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:312691..315040 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO01G01200.1 vs.

BLAST of NO01G01200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G01200	NO01G01200	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G01200.1	NO01G01200.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G01200.1.cds1	NO01G01200.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:312691..315040+
coding sequence from alignment at chr1:312691..315040+

mRNA sequence

>NO01G01200.1 ID=NO01G01200.1|Name=NO01G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2350bp
AAACGACAGGGTAAAGGTGAGGCTGTAATGGCAACAACAACACATAACGG
GCGGGCTGCCCCCTCCACCCTAGCTGGCCCATCGACGTCGTCAATACCAC
CAAGAAGCCATGACCCCACCACCACTCCCCCTGCACCCGTGAGCACGGAG
CCCGTAGTCTGGGAGGCGCATGTCACCGATTTGATCCGAAAGGACGGTCG
GTGGCGGCAAGTTTGGTCTCTCTTCCTCAAGGCATGCACGATTCCCGACG
ACACAACCACCTACCCGGGCCACGCAACTCAAAAGGAAACACGCAAGGGC
AAGCTGCATCGCGAAGAGCTCGCCCGCTGCTACAAGGATCCATCCGCTTT
CATTGACGGTCTAGCAGAGCTACGGCAAAACTTGCTGTTTCGGCATCACA
AGTGGCGAAGTTCCTCCCTCCCCTCTTTCCTGTCCAGAAGCGACAGTAAT
TGCAGCAGCAGGAGCATCAGTAGCAGCAGCAGCATTAGCATTAGCAGCAA
CAGCGGCAGCGGTGACAGTGGAGGAAACACTCCAAGCCAAAACATAGGTG
TACCCGAATGGAAATCTCACAAGGGGCGTTACATACGCGTGTCTCCAGCA
GCATCAGTTACACTTCTTCCCTTTCCTTCTTCCTCTATTTCTTCTTCGTC
CCCGTCGTTCTCACCCTTTATTGTCGAGGACGAAGAGACCCAAATGCGCG
AATTGCTCGTTACCCTTCTGAGCAGCAAAGTGGATCAGGGCTACCGAAGA
GAAATAGAAAACCAAACTACCAGCAGCACCACCAAAAACAAACAGCAGCA
ACTACAGCAACAGCAACAGCAACAGCAGCAGCAGCATCAACAACAACAGC
AACAATCAGAGCAACTGGAGGACACAGACGTCCGAATCCGTGGTTTTTCT
TACTTCCCCCCCCACGGCTACCAAAGCTGGCGTAAAAACGTCTTTGACAA
ATCCAGCTCTTATCGCCTTACCCTCGTGCATAACGTACCCTCGGGCCGCA
GTTCGTTTCGATATCGGCACCCAAGTACTGGCCTCCTTCACACCCTCCCT
GCTATAGACGGTACCGTTCGTCTTGTTCGTGTCTCCATTCCTCCCTCCTC
CTCCTTATCCTCTTTCTCCTCCTCTCGAGGTTGGGGGGCAGGAAGGGCAG
CGCCAGTTTGGCATTGCACGACGGCAGAAGATGGCCATTTGTGGTGTTTG
TCGTACCAGCTCTCGGCGAGGGCAGGACACCAGATGTTGCAAGATGGATG
TTTACGACCGGTGGTGCCCCTGCGGCCCCTCAAGCTGAGCGTCAAGATTC
CACCACCAGGGGAGGGAGAAAGGGGGGGAGGGAGGAGGAGTGGTGGGGAG
GAAGAGAAGAAGCGAAGTACGACTCCTTTGGCGGTGTCTTTCTTGTTTGG
GCATCGACGGCATCCGTTGCCGGGGCAGGAACAGATGTATCGGCAGCAGC
AGCAGCAGCAGGAAGAGCAGGGGGGAGGAGTGGTCAAGGTCCCAACGCCC
GGCAGTGGGAGCAGCAAAGGAGGGAGTGGGAGGAACAGCAGAAATGTGAC
CTTGGAGCGAGGCAGTCGCAACCTGGATGGAGGGCGGGGGATGGAGGGAG
GGCGGGACGAAGAAGGAGCAGGAATTGATGATAGCAAGACGGGAGAATGG
GACGAGGGAGGTTGGGACGGAGGGAGGGATGGAGGGGGAAGGTGGGGCGA
TGATTGTGATGATTTAGAGTCGGAGATGGGGGCATCTATTTCCAGTTCGT
GTGCGTGGGTGAGAAGTGGAGAGTTGAGCTCAGGGGAAGATGAAGGGGAG
GGGGGCGAGGGTGAAGGTAGGGAGATGATGCTGGCATCATCGTTTTGCGA
TGTGAGGTTGAATGAAGTGGTGGGAGGCTAGGATGAGGGAGAGAGGAAGG
AAAAGAAGGAGGATTTGGTGTGAACAGAGGTAGGGGGGAAACTGTATATT
TTTTAGAGTGCATTGAAATTTTGGAGGGCGGCAGAATGGAACGGACAGCG
AGTTTGATAGCAGAGTTTAGTGTGCTTGATCGCAGCGTAATTTTTTTTAC
TCCGTATGATGTCGATGTACTGTTCAACTATTGTTTGAATTTGGGGGGTA
TTTTCTTGAAGCCTTAAGTGCTTGTAAAATACACATGCTGCACGGCACCA
CGTGGCCTGTTTTAGAAGTAGCATTCATTTATACAACAAACTCCCTTGCC
GACTCAATAGACGTCGTTTTTTGTTAACCAGACGCTGGCGCGGAGAGACA
CGGCCAGCCAGACAGACAGACGCAAATAAAAGTTTTTCACGACTGTCAAA
GATTAAGAAGAGATAAATAAGAAACTCAAAACGACGCATGGAATTCACGA

protein sequence of NO01G01200.1

>NO01G01200.1-protein ID=NO01G01200.1-protein|Name=NO01G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=618bp
MATTTHNGRAAPSTLAGPSTSSIPPRSHDPTTTPPAPVSTEPVVWEAHVT
DLIRKDGRWRQVWSLFLKACTIPDDTTTYPGHATQKETRKGKLHREELAR
CYKDPSAFIDGLAELRQNLLFRHHKWRSSSLPSFLSRSDSNCSSRSISSS
SSISISSNSGSGDSGGNTPSQNIGVPEWKSHKGRYIRVSPAASVTLLPFP
SSSISSSSPSFSPFIVEDEETQMRELLVTLLSSKVDQGYRREIENQTTSS
TTKNKQQQLQQQQQQQQQQHQQQQQQSEQLEDTDVRIRGFSYFPPHGYQS
WRKNVFDKSSSYRLTLVHNVPSGRSSFRYRHPSTGLLHTLPAIDGTVRLV
RVSIPPSSSLSSFSSSRGWGAGRAAPVWHCTTAEDGHLWCLSYQLSARAG
HQMLQDGCLRPVVPLRPLKLSVKIPPPGEGERGGGRRSGGEEEKKRSTTP
LAVSFLFGHRRHPLPGQEQMYRQQQQQQEEQGGGVVKVPTPGSGSSKGGS
GRNSRNVTLERGSRNLDGGRGMEGGRDEEGAGIDDSKTGEWDEGGWDGGR
DGGGRWGDDCDDLESEMGASISSSCAWVRSGELSSGEDEGEGGEGEGREM
MLASSFCDVRLNEVVGG*

mRNA from alignment at chr1:312691..315040+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G01200.1 ID=NO01G01200.1|Name=NO01G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2350bp|location=Sequence derived from alignment at chr1:312691..315040+ (Nannochloropsis oceanica)
AAACGACAGGGTAAAGGTGAGGCTGTAATGGCAACAACAACACATAACGG
GCGGGCTGCCCCCTCCACCCTAGCTGGCCCATCGACGTCGTCAATACCAC
CAAGAAGCCATGACCCCACCACCACTCCCCCTGCACCCGTGAGCACGGAG
CCCGTAGTCTGGGAGGCGCATGTCACCGATTTGATCCGAAAGGACGGTCG
GTGGCGGCAAGTTTGGTCTCTCTTCCTCAAGGCATGCACGATTCCCGACG
ACACAACCACCTACCCGGGCCACGCAACTCAAAAGGAAACACGCAAGGGC
AAGCTGCATCGCGAAGAGCTCGCCCGCTGCTACAAGGATCCATCCGCTTT
CATTGACGGTCTAGCAGAGCTACGGCAAAACTTGCTGTTTCGGCATCACA
AGTGGCGAAGTTCCTCCCTCCCCTCTTTCCTGTCCAGAAGCGACAGTAAT
TGCAGCAGCAGGAGCATCAGTAGCAGCAGCAGCATTAGCATTAGCAGCAA
CAGCGGCAGCGGTGACAGTGGAGGAAACACTCCAAGCCAAAACATAGGTG
TACCCGAATGGAAATCTCACAAGGGGCGTTACATACGCGTGTCTCCAGCA
GCATCAGTTACACTTCTTCCCTTTCCTTCTTCCTCTATTTCTTCTTCGTC
CCCGTCGTTCTCACCCTTTATTGTCGAGGACGAAGAGACCCAAATGCGCG
AATTGCTCGTTACCCTTCTGAGCAGCAAAGTGGATCAGGGCTACCGAAGA
GAAATAGAAAACCAAACTACCAGCAGCACCACCAAAAACAAACAGCAGCA
ACTACAGCAACAGCAACAGCAACAGCAGCAGCAGCATCAACAACAACAGC
AACAATCAGAGCAACTGGAGGACACAGACGTCCGAATCCGTGGTTTTTCT
TACTTCCCCCCCCACGGCTACCAAAGCTGGCGTAAAAACGTCTTTGACAA
ATCCAGCTCTTATCGCCTTACCCTCGTGCATAACGTACCCTCGGGCCGCA
GTTCGTTTCGATATCGGCACCCAAGTACTGGCCTCCTTCACACCCTCCCT
GCTATAGACGGTACCGTTCGTCTTGTTCGTGTCTCCATTCCTCCCTCCTC
CTCCTTATCCTCTTTCTCCTCCTCTCGAGGTTGGGGGGCAGGAAGGGCAG
CGCCAGTTTGGCATTGCACGACGGCAGAAGATGGCCATTTGTGGTGTTTG
TCGTACCAGCTCTCGGCGAGGGCAGGACACCAGATGTTGCAAGATGGATG
TTTACGACCGGTGGTGCCCCTGCGGCCCCTCAAGCTGAGCGTCAAGATTC
CACCACCAGGGGAGGGAGAAAGGGGGGGAGGGAGGAGGAGTGGTGGGGAG
GAAGAGAAGAAGCGAAGTACGACTCCTTTGGCGGTGTCTTTCTTGTTTGG
GCATCGACGGCATCCGTTGCCGGGGCAGGAACAGATGTATCGGCAGCAGC
AGCAGCAGCAGGAAGAGCAGGGGGGAGGAGTGGTCAAGGTCCCAACGCCC
GGCAGTGGGAGCAGCAAAGGAGGGAGTGGGAGGAACAGCAGAAATGTGAC
CTTGGAGCGAGGCAGTCGCAACCTGGATGGAGGGCGGGGGATGGAGGGAG
GGCGGGACGAAGAAGGAGCAGGAATTGATGATAGCAAGACGGGAGAATGG
GACGAGGGAGGTTGGGACGGAGGGAGGGATGGAGGGGGAAGGTGGGGCGA
TGATTGTGATGATTTAGAGTCGGAGATGGGGGCATCTATTTCCAGTTCGT
GTGCGTGGGTGAGAAGTGGAGAGTTGAGCTCAGGGGAAGATGAAGGGGAG
GGGGGCGAGGGTGAAGGTAGGGAGATGATGCTGGCATCATCGTTTTGCGA
TGTGAGGTTGAATGAAGTGGTGGGAGGCTAGGATGAGGGAGAGAGGAAGG
AAAAGAAGGAGGATTTGGTGTGAACAGAGGTAGGGGGGAAACTGTATATT
TTTTAGAGTGCATTGAAATTTTGGAGGGCGGCAGAATGGAACGGACAGCG
AGTTTGATAGCAGAGTTTAGTGTGCTTGATCGCAGCGTAATTTTTTTTAC
TCCGTATGATGTCGATGTACTGTTCAACTATTGTTTGAATTTGGGGGGTA
TTTTCTTGAAGCCTTAAGTGCTTGTAAAATACACATGCTGCACGGCACCA
CGTGGCCTGTTTTAGAAGTAGCATTCATTTATACAACAAACTCCCTTGCC
GACTCAATAGACGTCGTTTTTTGTTAACCAGACGCTGGCGCGGAGAGACA
CGGCCAGCCAGACAGACAGACGCAAATAAAAGTTTTTCACGACTGTCAAA
GATTAAGAAGAGATAAATAAGAAACTCAAAACGACGCATGGAATTCACGA

Coding sequence (CDS) from alignment at chr1:312691..315040+

>NO01G01200.1 ID=NO01G01200.1|Name=NO01G01200.1|organism=Nannochloropsis oceanica|type=CDS|length=1854bp|location=Sequence derived from alignment at chr1:312691..315040+ (Nannochloropsis oceanica)
ATGGCAACAACAACACATAACGGGCGGGCTGCCCCCTCCACCCTAGCTGG
CCCATCGACGTCGTCAATACCACCAAGAAGCCATGACCCCACCACCACTC
CCCCTGCACCCGTGAGCACGGAGCCCGTAGTCTGGGAGGCGCATGTCACC
GATTTGATCCGAAAGGACGGTCGGTGGCGGCAAGTTTGGTCTCTCTTCCT
CAAGGCATGCACGATTCCCGACGACACAACCACCTACCCGGGCCACGCAA
CTCAAAAGGAAACACGCAAGGGCAAGCTGCATCGCGAAGAGCTCGCCCGC
TGCTACAAGGATCCATCCGCTTTCATTGACGGTCTAGCAGAGCTACGGCA
AAACTTGCTGTTTCGGCATCACAAGTGGCGAAGTTCCTCCCTCCCCTCTT
TCCTGTCCAGAAGCGACAGTAATTGCAGCAGCAGGAGCATCAGTAGCAGC
AGCAGCATTAGCATTAGCAGCAACAGCGGCAGCGGTGACAGTGGAGGAAA
CACTCCAAGCCAAAACATAGGTGTACCCGAATGGAAATCTCACAAGGGGC
GTTACATACGCGTGTCTCCAGCAGCATCAGTTACACTTCTTCCCTTTCCT
TCTTCCTCTATTTCTTCTTCGTCCCCGTCGTTCTCACCCTTTATTGTCGA
GGACGAAGAGACCCAAATGCGCGAATTGCTCGTTACCCTTCTGAGCAGCA
AAGTGGATCAGGGCTACCGAAGAGAAATAGAAAACCAAACTACCAGCAGC
ACCACCAAAAACAAACAGCAGCAACTACAGCAACAGCAACAGCAACAGCA
GCAGCAGCATCAACAACAACAGCAACAATCAGAGCAACTGGAGGACACAG
ACGTCCGAATCCGTGGTTTTTCTTACTTCCCCCCCCACGGCTACCAAAGC
TGGCGTAAAAACGTCTTTGACAAATCCAGCTCTTATCGCCTTACCCTCGT
GCATAACGTACCCTCGGGCCGCAGTTCGTTTCGATATCGGCACCCAAGTA
CTGGCCTCCTTCACACCCTCCCTGCTATAGACGGTACCGTTCGTCTTGTT
CGTGTCTCCATTCCTCCCTCCTCCTCCTTATCCTCTTTCTCCTCCTCTCG
AGGTTGGGGGGCAGGAAGGGCAGCGCCAGTTTGGCATTGCACGACGGCAG
AAGATGGCCATTTGTGGTGTTTGTCGTACCAGCTCTCGGCGAGGGCAGGA
CACCAGATGTTGCAAGATGGATGTTTACGACCGGTGGTGCCCCTGCGGCC
CCTCAAGCTGAGCGTCAAGATTCCACCACCAGGGGAGGGAGAAAGGGGGG
GAGGGAGGAGGAGTGGTGGGGAGGAAGAGAAGAAGCGAAGTACGACTCCT
TTGGCGGTGTCTTTCTTGTTTGGGCATCGACGGCATCCGTTGCCGGGGCA
GGAACAGATGTATCGGCAGCAGCAGCAGCAGCAGGAAGAGCAGGGGGGAG
GAGTGGTCAAGGTCCCAACGCCCGGCAGTGGGAGCAGCAAAGGAGGGAGT
GGGAGGAACAGCAGAAATGTGACCTTGGAGCGAGGCAGTCGCAACCTGGA
TGGAGGGCGGGGGATGGAGGGAGGGCGGGACGAAGAAGGAGCAGGAATTG
ATGATAGCAAGACGGGAGAATGGGACGAGGGAGGTTGGGACGGAGGGAGG
GATGGAGGGGGAAGGTGGGGCGATGATTGTGATGATTTAGAGTCGGAGAT
GGGGGCATCTATTTCCAGTTCGTGTGCGTGGGTGAGAAGTGGAGAGTTGA
GCTCAGGGGAAGATGAAGGGGAGGGGGGCGAGGGTGAAGGTAGGGAGATG
ATGCTGGCATCATCGTTTTGCGATGTGAGGTTGAATGAAGTGGTGGGAGG
CTAG

Synonyms

Publications