NO01G01180.1, NO01G01180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01180.1
Unique NameNO01G01180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length777
Alignment locationchr1:307127..307903 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:307127..307903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01180.1 vs.
Match: EWM29026.1 (hypothetical protein Naga_100071g3 [Nannochloropsis gaditana])

HSP 1 Score: 209.9 bits (533), Expect = 7.000e-51
Identity = 116/185 (62.70%), Postives = 136/185 (73.51%), Query Frame = 0 
Query:    1 MSTEEVKAAAAVATGAAAAPPAATTTTTTAVAAAAAKDDKREGTNFFGTLSEMRPGETIKKGLRLYTHLEEEGTPLRPFFKSCRESLNGLVGRADLFVETGKAHASAAIEGLKPDLSWLGEEVGTIDEFARTHRELTVGAIGLMVALPSALGGVKRAALNGVVAAGGAACMFAMSDFFERQDKKK 186
            MS ++VK AAA   G  A+P AA   + T          K    +   T+ ++RPGE  K+ LR Y HLEE+GTPLRP FKS RESLN  V R D F+ETGKAHASAAI  L+PD+SW+G+EVGT+D+FARTHRELTVGAIGL VALPSALGG +RA +NGVVAA GAA MFAMSDFFERQ+KKK
Sbjct:    1 MSDQDVKEAAAA--GGNASPGAAVNESGTTT--------KETRKDLQATMKDLRPGEKAKEALRWYVHLEEKGTPLRPIFKSARESLNDAVARVDQFLETGKAHASAAIHNLEPDISWMGKEVGTVDDFARTHRELTVGAIGLAVALPSALGGARRAVINGVVAATGAAAMFAMSDFFERQEKKK 175
The following BLAST results are available for this feature:
BLAST of NO01G01180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29026.17.000e-5162.70hypothetical protein Naga_100071g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01180NO01G01180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01180.1NO01G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01180.1.cds1NO01G01180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01180.1 ID=NO01G01180.1|Name=NO01G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=777bp
CAAAAGCGTCATCAGAACCACCAGAGGAATCATGTCTACGGAGGAGGTCA
AGGCTGCGGCCGCAGTGGCAACAGGAGCAGCAGCAGCACCACCAGCAGCA
ACAACAACGACAACAACAGCAGTAGCAGCAGCAGCAGCCAAAGATGATAA
GAGGGAGGGCACCAATTTTTTTGGCACCTTGAGTGAGATGCGCCCCGGGG
AAACGATTAAAAAAGGACTGCGCTTGTATACGCACTTAGAAGAGGAGGGC
ACGCCACTGCGCCCCTTTTTCAAGTCATGTCGGGAAAGTCTAAACGGTTT
GGTGGGCAGGGCGGATTTGTTTGTTGAAACGGGGAAGGCACATGCGTCGG
CGGCCATTGAAGGCCTCAAGCCAGATCTGTCATGGTTAGGGGAGGAGGTG
GGCACAATTGATGAGTTCGCGAGGACGCACAGGGAGCTGACGGTTGGGGC
AATTGGCCTCATGGTAGCTTTGCCTTCGGCCTTGGGAGGGGTCAAAAGAG
CGGCACTAAATGGAGTAGTGGCAGCCGGTGGGGCGGCATGCATGTTTGCG
ATGAGTGATTTTTTTGAACGACAAGACAAAAAGAAAGTGGTTGGAAAGCC
CGTTAGTGAAAAAAAGTAAGACAAAAATGAGAGAGAGGAAGAGTCGTAGG
AAGATAAAAAAGATATAAAGAAAGGAAGAGAAGAAGAAATCGAAAAAGTA
GATGCGGAGACTTGACATACAGAATTGGGGGTCGAAGAGGAGCACAAACG
AAACAAGTATCGTGAGACGTCGAGGAC
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protein sequence of NO01G01180.1

>NO01G01180.1-protein ID=NO01G01180.1-protein|Name=NO01G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MSTEEVKAAAAVATGAAAAPPAATTTTTTAVAAAAAKDDKREGTNFFGTL
SEMRPGETIKKGLRLYTHLEEEGTPLRPFFKSCRESLNGLVGRADLFVET
GKAHASAAIEGLKPDLSWLGEEVGTIDEFARTHRELTVGAIGLMVALPSA
LGGVKRAALNGVVAAGGAACMFAMSDFFERQDKKKVVGKPVSEKK*
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mRNA from alignment at chr1:307127..307903+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01180.1 ID=NO01G01180.1|Name=NO01G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=777bp|location=Sequence derived from alignment at chr1:307127..307903+ (Nannochloropsis oceanica)
CAAAAGCGTCATCAGAACCACCAGAGGAATCATGTCTACGGAGGAGGTCA
AGGCTGCGGCCGCAGTGGCAACAGGAGCAGCAGCAGCACCACCAGCAGCA
ACAACAACGACAACAACAGCAGTAGCAGCAGCAGCAGCCAAAGATGATAA
GAGGGAGGGCACCAATTTTTTTGGCACCTTGAGTGAGATGCGCCCCGGGG
AAACGATTAAAAAAGGACTGCGCTTGTATACGCACTTAGAAGAGGAGGGC
ACGCCACTGCGCCCCTTTTTCAAGTCATGTCGGGAAAGTCTAAACGGTTT
GGTGGGCAGGGCGGATTTGTTTGTTGAAACGGGGAAGGCACATGCGTCGG
CGGCCATTGAAGGCCTCAAGCCAGATCTGTCATGGTTAGGGGAGGAGGTG
GGCACAATTGATGAGTTCGCGAGGACGCACAGGGAGCTGACGGTTGGGGC
AATTGGCCTCATGGTAGCTTTGCCTTCGGCCTTGGGAGGGGTCAAAAGAG
CGGCACTAAATGGAGTAGTGGCAGCCGGTGGGGCGGCATGCATGTTTGCG
ATGAGTGATTTTTTTGAACGACAAGACAAAAAGAAAGTGGTTGGAAAGCC
CGTTAGTGAAAAAAAGTAAGACAAAAATGAGAGAGAGGAAGAGTCGTAGG
AAGATAAAAAAGATATAAAGAAAGGAAGAGAAGAAGAAATCGAAAAAGTA
GATGCGGAGACTTGACATACAGAATTGGGGGTCGAAGAGGAGCACAAACG
AAACAAGTATCGTGAGACGTCGAGGAC
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Coding sequence (CDS) from alignment at chr1:307127..307903+

>NO01G01180.1 ID=NO01G01180.1|Name=NO01G01180.1|organism=Nannochloropsis oceanica|type=CDS|length=588bp|location=Sequence derived from alignment at chr1:307127..307903+ (Nannochloropsis oceanica)
ATGTCTACGGAGGAGGTCAAGGCTGCGGCCGCAGTGGCAACAGGAGCAGC
AGCAGCACCACCAGCAGCAACAACAACGACAACAACAGCAGTAGCAGCAG
CAGCAGCCAAAGATGATAAGAGGGAGGGCACCAATTTTTTTGGCACCTTG
AGTGAGATGCGCCCCGGGGAAACGATTAAAAAAGGACTGCGCTTGTATAC
GCACTTAGAAGAGGAGGGCACGCCACTGCGCCCCTTTTTCAAGTCATGTC
GGGAAAGTCTAAACGGTTTGGTGGGCAGGGCGGATTTGTTTGTTGAAACG
GGGAAGGCACATGCGTCGGCGGCCATTGAAGGCCTCAAGCCAGATCTGTC
ATGGTTAGGGGAGGAGGTGGGCACAATTGATGAGTTCGCGAGGACGCACA
GGGAGCTGACGGTTGGGGCAATTGGCCTCATGGTAGCTTTGCCTTCGGCC
TTGGGAGGGGTCAAAAGAGCGGCACTAAATGGAGTAGTGGCAGCCGGTGG
GGCGGCATGCATGTTTGCGATGAGTGATTTTTTTGAACGACAAGACAAAA
AGAAAGTGGTTGGAAAGCCCGTTAGTGAAAAAAAGTAA
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Synonyms
Publications