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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:279201..281527 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01100.1 vs.
Match: EWM29041.1 (UDPglucose pyrophosphorylase [Nannochloropsis gaditana]) HSP 1 Score: 899.8 bits (2324), Expect = 5.600e-258 Identity = 477/763 (62.52%), Postives = 570/763 (74.71%), Query Frame = 0
Query: 1 MGKRKNKSKRGSGGGNANKPEGAGAADTASAARKESVDADEHVDMSVSNSGTSRTSGDASTTTARPAGLESNWAILSTAEQALAELLLKAGQAHLFDGWDTAGTNDAEKHAFFAQVQRLHDTYP--DGLAAYVDRAKALLAESATGVNSLDGWTPAVPEGAILEPGSAKYCEWETAGKDELKATGFVLVAGGLGERLGFSGIKVALPTEITTKTTYMEFYCKYLLAVGAKNG-GKIPPLAIMVSDDTHDRTLALLESNDYFGYPKEALTLMKQEKVAALADNDARIARAANA-EGRGDGRYGIDCKPHGHGDVHSLLHRTGVAKRWEVEGLKWVVFFQDTNALAFLSLAAALGVSQKLGLEVNSIAIPRVPKQAIGAITRLTHTTEKETKVMIVNVEYNQLDPLLRASGSPEGDVADPSTGYSPYPGNINQLIFALSPYVATLNKTHGVMGEFVNPKYADAARSVFKKPTRLECMMQDYPKMLPLEAKVGFTSLPAWFSFSPVKNNAPDAAKAAQAGTPPGSASTGEADQYYAVAEQLRLLGCKVGKAPEATYTGIPVSLGPRVVIDPSVALNFSEMKKVFPSPDRVTIGGEATLVLQGPGEVEVQSLELEGALVLSVGKGTTVIVKDMVVKNKGHVVVPVSGKDEPDEVLLMRGYRLEKQDELRVQAPANAGRMVLAREGNLVPEAE-SLPVKIAAVSAIPTKPVNPQAA---------HVTAPAPTPATDV---------ELEDKAVSGNCLARAFDCFKK 741
M K+KN KR GNA+ + + A KE + D D + S + S+T + T +P GL+ NW+ILS EQALAE+LLKAGQAHLFD WD GTND KHAFFA V+RLH TYP GL AY++RA+ LLA SA G NSLD W P VPEG +L+PGS ++ WE G+ EL AT FVLVAGGLGERLG+SGIKVALPTE+TT+T+Y+EFYC YL+A+G G GK+PPLAIMVSDDTHDRTLA+L++ND+FG+P++ LTLMKQEKV AL DN+ARIAR + +G D RY IDCKPHGHGDVHSLLH TG+A+RWE +GLKWVVFFQDTNALAF LAAAL VS + L VNS+AIPRVPKQAIGAITRLT T+ ET+VMIVNVEYNQLDPLLRA+GS EGD ADP+TG+SPYPGNINQLIFAL+PYVATL KTHGVM EFVNPKYAD AR+VFKKPTRLECMMQD+PK+L EAKVGFTSLPAWFSFSPVKNN DAAKA ++GTPPG A+TGEADQY+A AEQLRLLGC+V +AP Y G+ VSLGPRVVI PS+AL + +++ +F P++V+I ATLV++G G+VEV S+ LEGAL+LSVG+GTTV++KD+ +KNKGH+V P+SGK+E DEV MRGYRL K +ELR+QAP NAGR+ L +G L E + S A S T P AA H + P+ A D E + S +R F CF+K
Sbjct: 1 MAKKKNTRKRNKAAGNASTKDATPTSAATKAGPKE-ISLDSTKD-TASQTSVSKTGSNDRT---KPTGLDVNWSILSQDEQALAEILLKAGQAHLFDEWDAPGTNDELKHAFFAHVERLHRTYPFPGGLLAYIERARRLLAGSAAGANSLDDWVPTVPEGEVLKPGSEEFSNWEAVGEAELSATAFVLVAGGLGERLGYSGIKVALPTEMTTETSYLEFYCNYLVALGMMKGKGKVPPLAIMVSDDTHDRTLAVLQANDFFGFPRDQLTLMKQEKVPALMDNNARIARPSRGTKGVDDVRYAIDCKPHGHGDVHSLLHSTGLARRWEEDGLKWVVFFQDTNALAFFPLAAALAVSARRDLAVNSLAIPRVPKQAIGAITRLTRTSGTETQVMIVNVEYNQLDPLLRAAGSGEGDTADPATGHSPYPGNINQLIFALTPYVATLEKTHGVMAEFVNPKYADGARTVFKKPTRLECMMQDFPKVLGPEAKVGFTSLPAWFSFSPVKNNIADAAKALESGTPPGGAATGEADQYFAYAEQLRLLGCRVMQAPTEGYAGVSVSLGPRVVIAPSIALTYHDLRAIFVHPEKVSIDAAATLVIRGTGKVEVDSITLEGALILSVGQGTTVVLKDLTLKNKGHIVRPLSGKEESDEVSRMRGYRLVKMEELRIQAPPNAGRLFLTAQGTLTHEKDLSAKGSAATQSYAATTAATPAAAVTEARDGQKHPASQDPSHAADATQGSGEGNEAKEAPSGSQTFFSRIFSCFRK 758
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01100.1 ID=NO01G01100.1|Name=NO01G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2238bp ATGGGCAAGAGGAAGAATAAGAGCAAGCGCGGCAGCGGAGGGGGCAACGC CAATAAACCGGAGGGCGCTGGCGCAGCAGACACGGCTTCGGCCGCCCGAA AGGAGTCCGTCGATGCCGATGAGCACGTCGACATGTCTGTGTCGAATTCC GGCACCAGCAGAACCAGCGGCGATGCCTCCACCACGACCGCCCGTCCTGC CGGCCTGGAGAGTAATTGGGCCATCCTTTCCACTGCGGAACAAGCCTTGG CCGAGCTCCTGCTCAAGGCCGGACAAGCTCATCTCTTTGATGGGTGGGAT ACCGCAGGGACAAACGACGCGGAAAAGCATGCCTTTTTCGCCCAAGTCCA GAGGCTACACGATACATACCCGGATGGCCTGGCTGCGTACGTAGATCGAG CGAAAGCGCTATTGGCCGAGTCGGCCACTGGAGTGAACTCGCTCGATGGA TGGACGCCCGCAGTACCAGAAGGTGCAATTCTGGAGCCGGGTTCGGCCAA GTATTGCGAGTGGGAGACTGCTGGGAAGGACGAATTAAAAGCGACAGGCT TTGTGTTGGTGGCGGGGGGGTTGGGAGAGCGGCTTGGGTTCAGTGGGATA AAGGTGGCGTTGCCGACGGAGATAACGACGAAGACGACGTATATGGAGTT TTATTGCAAGTATTTGCTGGCGGTGGGTGCTAAGAATGGAGGAAAGATCC CGCCGTTGGCAATCATGGTGTCGGATGACACGCATGATCGGACGTTGGCC TTGCTTGAATCGAATGATTATTTTGGGTATCCCAAGGAGGCATTAACGTT AATGAAGCAAGAAAAGGTGGCGGCCTTGGCCGATAATGACGCACGGATCG CTCGGGCCGCGAATGCGGAGGGAAGGGGTGATGGACGCTATGGCATTGAT TGTAAGCCCCACGGACACGGGGATGTCCACTCCCTCCTGCACCGCACGGG TGTAGCCAAACGCTGGGAGGTGGAGGGTCTGAAATGGGTGGTATTTTTCC AGGATACGAATGCCCTCGCATTTCTGTCTTTGGCGGCTGCCCTTGGGGTG AGCCAAAAGTTGGGATTGGAGGTCAACTCAATCGCGATTCCTCGGGTGCC AAAGCAAGCCATCGGGGCTATAACTCGCCTCACCCATACGACGGAGAAAG AGACTAAAGTTATGATCGTCAACGTGGAATACAACCAGCTCGACCCCCTT CTCCGCGCGTCCGGTTCTCCCGAGGGGGACGTCGCAGACCCCTCCACAGG CTATAGCCCCTACCCTGGAAACATCAACCAGTTGATCTTCGCCCTCTCAC CCTACGTTGCCACCCTCAACAAGACCCACGGCGTGATGGGCGAGTTCGTC AACCCCAAGTATGCGGATGCTGCCCGTTCTGTCTTCAAGAAGCCCACTCG GCTCGAGTGCATGATGCAGGATTACCCCAAAATGCTGCCGCTCGAGGCCA AGGTGGGTTTCACCTCCCTCCCTGCCTGGTTTTCTTTCTCGCCTGTCAAG AACAATGCTCCCGATGCGGCGAAAGCTGCTCAAGCAGGAACTCCTCCTGG GAGTGCGTCCACAGGAGAAGCTGATCAGTACTATGCCGTTGCGGAACAGC TGCGATTGCTGGGATGCAAGGTGGGTAAGGCACCCGAGGCGACCTACACG GGCATTCCAGTCAGCCTTGGCCCCCGGGTGGTAATTGACCCTTCGGTTGC TTTGAACTTTTCAGAGATGAAGAAGGTTTTTCCTTCTCCCGACAGGGTTA CTATTGGGGGGGAGGCAACTTTGGTGTTGCAGGGGCCGGGGGAGGTGGAG GTGCAGAGCTTGGAGCTGGAGGGGGCTTTGGTCCTGTCTGTGGGAAAGGG GACGACTGTGATAGTGAAAGATATGGTAGTGAAGAATAAGGGTCATGTCG TTGTCCCGGTTTCTGGAAAGGACGAGCCAGATGAGGTGCTACTCATGCGT GGGTACCGGTTGGAGAAGCAGGACGAGCTTCGTGTCCAAGCCCCGGCGAA TGCGGGCCGCATGGTTCTGGCCAGAGAGGGAAATCTGGTACCCGAGGCAG AGTCGCTGCCTGTCAAGATAGCAGCAGTATCGGCGATTCCGACAAAGCCT GTCAACCCCCAGGCCGCCCACGTCACTGCGCCAGCGCCCACGCCAGCCAC GGATGTGGAGTTGGAAGATAAGGCAGTCAGTGGCAATTGTCTGGCACGGG CCTTTGATTGCTTCAAGAAGAAGCCTGCGAGGGCATAA back to topprotein sequence of NO01G01100.1 >NO01G01100.1-protein ID=NO01G01100.1-protein|Name=NO01G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=746bp MGKRKNKSKRGSGGGNANKPEGAGAADTASAARKESVDADEHVDMSVSNS GTSRTSGDASTTTARPAGLESNWAILSTAEQALAELLLKAGQAHLFDGWD TAGTNDAEKHAFFAQVQRLHDTYPDGLAAYVDRAKALLAESATGVNSLDG WTPAVPEGAILEPGSAKYCEWETAGKDELKATGFVLVAGGLGERLGFSGI KVALPTEITTKTTYMEFYCKYLLAVGAKNGGKIPPLAIMVSDDTHDRTLA LLESNDYFGYPKEALTLMKQEKVAALADNDARIARAANAEGRGDGRYGID CKPHGHGDVHSLLHRTGVAKRWEVEGLKWVVFFQDTNALAFLSLAAALGV SQKLGLEVNSIAIPRVPKQAIGAITRLTHTTEKETKVMIVNVEYNQLDPL LRASGSPEGDVADPSTGYSPYPGNINQLIFALSPYVATLNKTHGVMGEFV NPKYADAARSVFKKPTRLECMMQDYPKMLPLEAKVGFTSLPAWFSFSPVK NNAPDAAKAAQAGTPPGSASTGEADQYYAVAEQLRLLGCKVGKAPEATYT GIPVSLGPRVVIDPSVALNFSEMKKVFPSPDRVTIGGEATLVLQGPGEVE VQSLELEGALVLSVGKGTTVIVKDMVVKNKGHVVVPVSGKDEPDEVLLMR GYRLEKQDELRVQAPANAGRMVLAREGNLVPEAESLPVKIAAVSAIPTKP VNPQAAHVTAPAPTPATDVELEDKAVSGNCLARAFDCFKKKPARA* back to topmRNA from alignment at chr1:279201..281527+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01100.1 ID=NO01G01100.1|Name=NO01G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2327bp|location=Sequence derived from alignment at chr1:279201..281527+ (Nannochloropsis oceanica) ATGGGCAAGAGGAAGAATAAGAGCAAGCGCGGCAGCGGAGGGGGCAACGC
CAATAAACCGGAGGGCGCTGGCGCAGCAGGTAAAGAGGATGTCAGAGACC
GTTCTGACCTTGGCTTGGCATCATCCCCCTCACCGCAAGCAACTACACTC
CACGCCACAACTAAACAGACACGGCTTCGGCCGCCCGAAAGGAGTCCGTC
GATGCCGATGAGCACGTCGACATGTCTGTGTCGAATTCCGGCACCAGCAG
AACCAGCGGCGATGCCTCCACCACGACCGCCCGTCCTGCCGGCCTGGAGA
GTAATTGGGCCATCCTTTCCACTGCGGAACAAGCCTTGGCCGAGCTCCTG
CTCAAGGCCGGACAAGCTCATCTCTTTGATGGGTGGGATACCGCAGGGAC
AAACGACGCGGAAAAGCATGCCTTTTTCGCCCAAGTCCAGAGGCTACACG
ATACATACCCGGATGGCCTGGCTGCGTACGTAGATCGAGCGAAAGCGCTA
TTGGCCGAGTCGGCCACTGGAGTGAACTCGCTCGATGGATGGACGCCCGC
AGTACCAGAAGGTGCAATTCTGGAGCCGGGTTCGGCCAAGTATTGCGAGT
GGGAGACTGCTGGGAAGGACGAATTAAAAGCGACAGGCTTTGTGTTGGTG
GCGGGGGGGTTGGGAGAGCGGCTTGGGTTCAGTGGGATAAAGGTGGCGTT
GCCGACGGAGATAACGACGAAGACGACGTATATGGAGTTTTATTGCAAGT
ATTTGCTGGCGGTGGGTGCTAAGAATGGAGGAAAGATCCCGCCGTTGGCA
ATCATGGTGTCGGATGACACGCATGATCGGACGTTGGCCTTGCTTGAATC
GAATGATTATTTTGGGTATCCCAAGGAGGCATTAACGTTAATGAAGCAAG
AAAAGGTGGCGGCCTTGGCCGATAATGACGCACGGATCGCTCGGGCCGCG
AATGCGGAGGGAAGGGGTGATGGACGCTATGGCATTGATTGTAAGCCCCA
CGGACACGGGGATGTCCACTCCCTCCTGCACCGCACGGGTGTAGCCAAAC
GCTGGGAGGTGGAGGGTCTGAAATGGGTGGTATTTTTCCAGGATACGAAT
GCCCTCGCATTTCTGTCTTTGGCGGCTGCCCTTGGGGTGAGCCAAAAGTT
GGGATTGGAGGTCAACTCAATCGCGATTCCTCGGGTGCCAAAGCAAGCCA
TCGGGGCTATAACTCGCCTCACCCATACGACGGAGAAAGAGACTAAAGTT
ATGATCGTCAACGTGGAATACAACCAGCTCGACCCCCTTCTCCGCGCGTC
CGGTTCTCCCGAGGGGGACGTCGCAGACCCCTCCACAGGCTATAGCCCCT
ACCCTGGAAACATCAACCAGTTGATCTTCGCCCTCTCACCCTACGTTGCC
ACCCTCAACAAGACCCACGGCGTGATGGGCGAGTTCGTCAACCCCAAGTA
TGCGGATGCTGCCCGTTCTGTCTTCAAGAAGCCCACTCGGCTCGAGTGCA
TGATGCAGGATTACCCCAAAATGCTGCCGCTCGAGGCCAAGGTGGGTTTC
ACCTCCCTCCCTGCCTGGTTTTCTTTCTCGCCTGTCAAGAACAATGCTCC
CGATGCGGCGAAAGCTGCTCAAGCAGGAACTCCTCCTGGGAGTGCGTCCA
CAGGAGAAGCTGATCAGTACTATGCCGTTGCGGAACAGCTGCGATTGCTG
GGATGCAAGGTGGGTAAGGCACCCGAGGCGACCTACACGGGCATTCCAGT
CAGCCTTGGCCCCCGGGTGGTAATTGACCCTTCGGTTGCTTTGAACTTTT
CAGAGATGAAGAAGGTTTTTCCTTCTCCCGACAGGGTTACTATTGGGGGG
GAGGCAACTTTGGTGTTGCAGGGGCCGGGGGAGGTGGAGGTGCAGAGCTT
GGAGCTGGAGGGGGCTTTGGTCCTGTCTGTGGGAAAGGGGACGACTGTGA
TAGTGAAAGATATGGTAGTGAAGAATAAGGGTCATGTCGTTGTCCCGGTT
TCTGGAAAGGACGAGCCAGATGAGGTGCTACTCATGCGTGGGTACCGGTT
GGAGAAGCAGGACGAGCTTCGTGTCCAAGCCCCGGCGAATGCGGGCCGCA
TGGTTCTGGCCAGAGAGGGAAATCTGGTACCCGAGGCAGAGTCGCTGCCT
GTCAAGATAGCAGCAGTATCGGCGATTCCGACAAAGCCTGTCAACCCCCA
GGCCGCCCACGTCACTGCGCCAGCGCCCACGCCAGCCACGGATGTGGAGT
TGGAAGATAAGGCAGTCAGTGGCAATTGTCTGGCACGGGCCTTTGATTGC
TTCAAGAAGAAGCCTGCGAGGGCATAA back to topCoding sequence (CDS) from alignment at chr1:279201..281527+ >NO01G01100.1 ID=NO01G01100.1|Name=NO01G01100.1|organism=Nannochloropsis oceanica|type=CDS|length=2238bp|location=Sequence derived from alignment at chr1:279201..281527+ (Nannochloropsis oceanica) ATGGGCAAGAGGAAGAATAAGAGCAAGCGCGGCAGCGGAGGGGGCAACGC CAATAAACCGGAGGGCGCTGGCGCAGCAGACACGGCTTCGGCCGCCCGAA AGGAGTCCGTCGATGCCGATGAGCACGTCGACATGTCTGTGTCGAATTCC GGCACCAGCAGAACCAGCGGCGATGCCTCCACCACGACCGCCCGTCCTGC CGGCCTGGAGAGTAATTGGGCCATCCTTTCCACTGCGGAACAAGCCTTGG CCGAGCTCCTGCTCAAGGCCGGACAAGCTCATCTCTTTGATGGGTGGGAT ACCGCAGGGACAAACGACGCGGAAAAGCATGCCTTTTTCGCCCAAGTCCA GAGGCTACACGATACATACCCGGATGGCCTGGCTGCGTACGTAGATCGAG CGAAAGCGCTATTGGCCGAGTCGGCCACTGGAGTGAACTCGCTCGATGGA TGGACGCCCGCAGTACCAGAAGGTGCAATTCTGGAGCCGGGTTCGGCCAA GTATTGCGAGTGGGAGACTGCTGGGAAGGACGAATTAAAAGCGACAGGCT TTGTGTTGGTGGCGGGGGGGTTGGGAGAGCGGCTTGGGTTCAGTGGGATA AAGGTGGCGTTGCCGACGGAGATAACGACGAAGACGACGTATATGGAGTT TTATTGCAAGTATTTGCTGGCGGTGGGTGCTAAGAATGGAGGAAAGATCC CGCCGTTGGCAATCATGGTGTCGGATGACACGCATGATCGGACGTTGGCC TTGCTTGAATCGAATGATTATTTTGGGTATCCCAAGGAGGCATTAACGTT AATGAAGCAAGAAAAGGTGGCGGCCTTGGCCGATAATGACGCACGGATCG CTCGGGCCGCGAATGCGGAGGGAAGGGGTGATGGACGCTATGGCATTGAT TGTAAGCCCCACGGACACGGGGATGTCCACTCCCTCCTGCACCGCACGGG TGTAGCCAAACGCTGGGAGGTGGAGGGTCTGAAATGGGTGGTATTTTTCC AGGATACGAATGCCCTCGCATTTCTGTCTTTGGCGGCTGCCCTTGGGGTG AGCCAAAAGTTGGGATTGGAGGTCAACTCAATCGCGATTCCTCGGGTGCC AAAGCAAGCCATCGGGGCTATAACTCGCCTCACCCATACGACGGAGAAAG AGACTAAAGTTATGATCGTCAACGTGGAATACAACCAGCTCGACCCCCTT CTCCGCGCGTCCGGTTCTCCCGAGGGGGACGTCGCAGACCCCTCCACAGG CTATAGCCCCTACCCTGGAAACATCAACCAGTTGATCTTCGCCCTCTCAC CCTACGTTGCCACCCTCAACAAGACCCACGGCGTGATGGGCGAGTTCGTC AACCCCAAGTATGCGGATGCTGCCCGTTCTGTCTTCAAGAAGCCCACTCG GCTCGAGTGCATGATGCAGGATTACCCCAAAATGCTGCCGCTCGAGGCCA AGGTGGGTTTCACCTCCCTCCCTGCCTGGTTTTCTTTCTCGCCTGTCAAG AACAATGCTCCCGATGCGGCGAAAGCTGCTCAAGCAGGAACTCCTCCTGG GAGTGCGTCCACAGGAGAAGCTGATCAGTACTATGCCGTTGCGGAACAGC TGCGATTGCTGGGATGCAAGGTGGGTAAGGCACCCGAGGCGACCTACACG GGCATTCCAGTCAGCCTTGGCCCCCGGGTGGTAATTGACCCTTCGGTTGC TTTGAACTTTTCAGAGATGAAGAAGGTTTTTCCTTCTCCCGACAGGGTTA CTATTGGGGGGGAGGCAACTTTGGTGTTGCAGGGGCCGGGGGAGGTGGAG GTGCAGAGCTTGGAGCTGGAGGGGGCTTTGGTCCTGTCTGTGGGAAAGGG GACGACTGTGATAGTGAAAGATATGGTAGTGAAGAATAAGGGTCATGTCG TTGTCCCGGTTTCTGGAAAGGACGAGCCAGATGAGGTGCTACTCATGCGT GGGTACCGGTTGGAGAAGCAGGACGAGCTTCGTGTCCAAGCCCCGGCGAA TGCGGGCCGCATGGTTCTGGCCAGAGAGGGAAATCTGGTACCCGAGGCAG AGTCGCTGCCTGTCAAGATAGCAGCAGTATCGGCGATTCCGACAAAGCCT GTCAACCCCCAGGCCGCCCACGTCACTGCGCCAGCGCCCACGCCAGCCAC GGATGTGGAGTTGGAAGATAAGGCAGTCAGTGGCAATTGTCTGGCACGGG CCTTTGATTGCTTCAAGAAGAAGCCTGCGAGGGCATAA back to top
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