NO01G00920.1, NO01G00920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00920.1
Unique NameNO01G00920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length823
Alignment locationchr1:231344..232760 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:231344..232760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00920.1 vs.
Match: EWM29021.1 (atp synthase subunit epsilon [Nannochloropsis gaditana])

HSP 1 Score: 131.0 bits (328), Expect = 2.600e-27
Identity = 64/71 (90.14%), Postives = 70/71 (98.59%), Query Frame = 0 
Query:   51 AAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIYYKKLPWTPKLIGQPVGPLKVEVTSLK 122
            +AAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKI++K+L W+PK+IGQPVGPLKVEVTSLK
Sbjct:    2 SAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVEVTSLK 72
The following BLAST results are available for this feature:
BLAST of NO01G00920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29021.12.600e-2790.14atp synthase subunit epsilon [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00920NO01G00920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00920.1NO01G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00920.1.cds1NO01G00920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00920.1.cds2NO01G00920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00920.1.cds3NO01G00920.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00920.1.cds4NO01G00920.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00920.1 ID=NO01G00920.1|Name=NO01G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=823bp
TGGCTCGTGAATGATGATGCCTTGCACGCCCCACACGCCAAGCCACGGCC
TCTTCCGCCTCATTGCTCCCCTGTGCTTGAGTGTCTTGTCGATGTGCAGG
CGCGCTTTGACTGTGTGTCTCACGGTTTGTGCGCTGTACTGATATATGTC
ACATGTGTGTGGCAGGGCGGAGCACCCCTTCGTCCTCTCTCCCACTAACG
CCCGCCACCGGCCGCGGTGGCAAACAACAACAACCTGAATCCTTTTTGTC
TCACTTCCAAGCCCACAACCACAACACTTACACCACAGGGATAGCCATGT
CTGCCGCAGCCGCCACCACCTACTGGCGCATTGCGGGCCTGACGTACTTG
CAGTACACGAGCAAGGCGGCGGGTGTGCTGCGTGCGGCACTCAAGGAGCC
TCTCCGTACCAAGACGATGGCCAAGGAGAAGATCTACTACAAGAAGCTGC
CCTGGACCCCGAAGCTGATCGGCCAGCCCGTGGGACCGCTCAAGGTGGAG
GTGACGTCGCTAAAGTAAGGAGAAGGAGTAACTGCGGCGTGAAGACAAGG
GAGGGAGGGGCTGTGTGTGTAGTAAGTAGTGAGGAGAGGGGGAGGCAGCG
GGGTGCGAGGAATGGAGGAGATGCAGTGAGACACGAGTCTCTCGTGGCTG
TAGTTGGAATGAGTGTGCGGTGGCTTTGGTGAGGGTGAAACGAAGACGAA
AAAGAAGACAACAAAGGAGGGGACAAGGAAAAAGAGCTATAAGGTGGCAT
AGTCGTATGGGGACAGCCAACAGGACAGAAGCGGAAATGGTGGTATACCT
CGCTCGAGGTATTACTTTTATTC
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protein sequence of NO01G00920.1

>NO01G00920.1-protein ID=NO01G00920.1-protein|Name=NO01G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MCVAGRSTPSSSLPLTPATGRGGKQQQPESFLSHFQAHNHNTYTTGIAMS
AAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIYYKKLP
WTPKLIGQPVGPLKVEVTSLK*
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mRNA from alignment at chr1:231344..232760-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00920.1 ID=NO01G00920.1|Name=NO01G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1417bp|location=Sequence derived from alignment at chr1:231344..232760- (Nannochloropsis oceanica)
TGGCTCGTGAATGATGATGCCTTGCACGCCCCACACGCCAAGCCACGGCC
TCTTCCGCCTCATTGCTCCCCTGTGCTTGAGTGTCTTGTCGATGTGCAGG
CGCGCTTTGACTGTGTGTCTCACGGTTTGTGCGCTGTACTGATATATGTC
ACATGTGTGTGGCAGGGCGGAGCACCCCTTCGTCCTCTCTCCCACTAACG
CCCGCCACCGGCCGCGGTGGCAAACAACAACAACCTGAATCCTTTTTGTC
TCACTTCCAAGCCCACAACCACAACACTTACACCACAGGGATAGCCATGT
CTGCCGCAGCCGCCACCACCTACTGGCGCATTGCGGGCCTGACGTACTTG
CAGGTAAGTTGTGTCGGATTGCTGGGATTCCTTCGTCTCTCGCCCCCCCT
CCCTCCCTCCCTCCCTAATTCGTTCGTCTCCTCACAACTCCACTACGATG
ACTTATCTGCTCACACCACCTCTCCCACACCCACACACTTCTTGACAAAC
AGTACACGAGCAAGGCGGCGGGTGTGCTGCGTGCGGCACTCAAGGTACGT
CCAGCAAGCGAGCGACAGTAGGCGGTGAAGGGAGGGAGGGAGAGGGGCAG
GGAGGGAGGGAGAGGGGCAGGGAGGAAGGGACTGCGATGAGCTAGAAGCG
CATGGCCGACAATGCCATGAGTCTGCTATTTTACGTGTCGCGATGGCAGG
GAAGAAGAATTGTCAAGCGTGTTAATGAGAGCGATGTCAACCTCGATGGT
CACGTGCCGAGCACAGCAAGAAATCTCACCACCTCCCTCCCTCCCTCCCT
CCTTCCCTTCCTCTCTCCCGTGTCCTTGTCCTCACAGGAGCCTCTCCGTA
CCAAGACGATGGCCAAGGAGAAGATCTACTACAAGAAGCTGCCCTGGACC
CCGAAGCTGATCGGCCAGCCCGTGGGACCGCTCAAGGGTAAGAGCGGGTG
GGAGCAAGGGAGGGAAGGAGGAAGGGACGAAAGGAGAGAAAGGTAAATAA
AAGGAAGGAAGGACATGTAAACATGCCAGTACTCACTCTTGGCTTTTTTT
CCTGTTTTTCCGCACATAATTTTACACGCGTACGAACAGTGGAGGTGACG
TCGCTAAAGTAAGGAGAAGGAGTAACTGCGGCGTGAAGACAAGGGAGGGA
GGGGCTGTGTGTGTAGTAAGTAGTGAGGAGAGGGGGAGGCAGCGGGGTGC
GAGGAATGGAGGAGATGCAGTGAGACACGAGTCTCTCGTGGCTGTAGTTG
GAATGAGTGTGCGGTGGCTTTGGTGAGGGTGAAACGAAGACGAAAAAGAA
GACAACAAAGGAGGGGACAAGGAAAAAGAGCTATAAGGTGGCATAGTCGT
ATGGGGACAGCCAACAGGACAGAAGCGGAAATGGTGGTATACCTCGCTCG
AGGTATTACTTTTATTC
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Coding sequence (CDS) from alignment at chr1:231344..232760-

>NO01G00920.1 ID=NO01G00920.1|Name=NO01G00920.1|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at chr1:231344..232760- (Nannochloropsis oceanica)
ATGTGTGTGGCAGGGCGGAGCACCCCTTCGTCCTCTCTCCCACTAACGCC
CGCCACCGGCCGCGGTGGCAAACAACAACAACCTGAATCCTTTTTGTCTC
ACTTCCAAGCCCACAACCACAACACTTACACCACAGGGATAGCCATGTCT
GCCGCAGCCGCCACCACCTACTGGCGCATTGCGGGCCTGACGTACTTGCA
GTACACGAGCAAGGCGGCGGGTGTGCTGCGTGCGGCACTCAAGGAGCCTC
TCCGTACCAAGACGATGGCCAAGGAGAAGATCTACTACAAGAAGCTGCCC
TGGACCCCGAAGCTGATCGGCCAGCCCGTGGGACCGCTCAAGGTGGAGGT
GACGTCGCTAAAGTAA
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Synonyms
Publications