NO01G00830.1, NO01G00830.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G00830.1
Unique Name	NO01G00830.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2070
Alignment location	chr1:209519..211588 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:209519..211588 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO01G00830.1 vs.

BLAST of NO01G00830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G00830	NO01G00830	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G00830.1	NO01G00830.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G00830.1.cds1	NO01G00830.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:209519..211588-
coding sequence from alignment at chr1:209519..211588-

mRNA sequence

>NO01G00830.1 ID=NO01G00830.1|Name=NO01G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2070bp
AGGGAAATGGAACGCCACACCTTTCTCCAGGGGTTGACATGGCTGATACC
TTACAACGAGGTGTACAACCACCTCGAAGAAGACTTTAAAGACGACGCCC
CCTTAACGCCGCAATGGCCCCCGATCACCTATAATTGGCCTGCCACGGAT
GCTGCCAGTGCTGCGTCTGCGGCGATGCATCCGCCAGGACGCCAAAAACA
ACGCTGCCGACGCACCTTGGCCTCGCGCGTCATCTTGCAAGACAGTTCCT
GCTGCCTGCACCGGGGCCCCAAAGCCCTCTTTTTCGCCGCCGAAAGGCCG
CAAGACGATGCCACCCAAATGTCCTTCCAAATAGCTATGGTGGAGATGAA
CCCGGCGGCCTTTCGTGCTATCGTTCAGCAGCACATGCAGCGACGAAGGC
AACAGTCGCGGCGGGAGGAGCATGAGAAGCAACGTATACGACGAATGGAG
CGGTGGCGAGAGGAGCGAGAACAACGAACACCCGCACCAGCCGACGATGA
GAGCAGCTGTCTGCTGCAGCCTCCCGACTCTTCTTCCGTGTCTTCCTCCA
ATACCACCGGCAGTGGGGATGGTAGCAATGGCTGGAAGGATAGGGAAGGC
GACGAAGGCCTGGAAGAGGAGGACACCAAAGTCGAGAAGGAAGAGGACGA
CGATACTGTCGTGCCAGCACTCTTCTTCCGCATCGATGACCATGTATATC
TCGTAGATCATATGGCCATGGAAACAATCGTCTGCCCCAAAGGCGATCCC
CGGGCCGAGGCACCTCCGTCGTCCTCCACTTCCTCTGAGCCTTCCTCTCT
CCCTCCCTATGCAGCCTTCAAATTCCCCACAGTCACCTTGCGTTTCTGGC
AGTCCCGCCTGTCTTTATCACCCCTGAAGGCCACACAACCATTAATCAGC
GCAATCGATGCGATTTCTCGAGGACTTGCTCGACGATTGTGGCTTCCTCC
GTCGTTGGAAATCTCGCCGTCCGCAACAGTTATAAAACCAACAGCAGCAG
CAGCAGCAGCAATAGCAGCAGCAGCAGCAGCAGCAGCAAGAACAGGTGTC
AAGAGTATGGGAAAAGAATTAGGAGGAGCAGGAGGCGTCGAGGCAGCAGA
GAGCTTTCTAAGAGCGGTCGAGACGCTTTTGCTACTGCAGCCCTCCTCGT
CCTCCTCCTCCTCCTGCTCTTCCTCCCTCGCGTCCTCCGCTGTCGAGGAC
ATTTTCCTCCTCCGGCAGGCTGGTCGCATGTTCCGGAAGGCACTGGTGCC
GCTCTCTTACAGGATGGCAGGCTCAGAAGAGAACAAAAGGACACGAGGCC
TACTGGAGGAAGAAATAGCTTGGCGCCGGCGATGGGATCGCTTACTGATG
CAAATGTTCCCTATACGCCGCCCTCCATCGGGAGGGGCAGGAGGTGGGGG
GAAGGAGAGCAAGGTAGAGAGTGACTTAGTTGAAAGTGTGGAGGTGGCGA
CTGCGGCATTGAAGGCCGTCGTAAGGGAGAGGCATAGGGAGGCGATGAGG
GTGCGTACTGTGAGAGCACCGCAAGGGGAGGAGCCGCAGACGCAGCAGAC
GCAGCAGACGCAGCAGCAGCAGCAGGCGCTGCCAGGTGAGGGGCAGGAAG
AGAGGGGTGAAGATAAAGCAGGAAGAACAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGCTGGTTGTGGTCCTGGTGGTGAGGGGGAGGGAGAGGGGGA
GGGCGGCATGCATGGTGTGGAATGTGCGGGCTCCGAGGCAGGGATACGGG
CCAAGGGGACATATGTCGCCTCGTCCTTGACCGGGAGGACAAGGATGGGT
GGGTTCAAGAAACGATTGGCGACAGCTACGGTAACATCAGCAGCGCCAGC
ACAGCAGCAGCTGCAGCAGCAACAACCGCAGCAACAACAAGCACCAAAAT
CGTCCACCCCGGCACAAGGGAAAGGCCAAGGAAGGAAAAAGCGAGCGCGG
ACGATCGCAACGTGAAGAGATGAGGAATGAAGTTGTTTTCATAAAAGGAA
GAACGTGATAGCGAAATGGAAAATGAAGGGCGAATACGATCAACGTTTGG
TTGCTCGCATGAAAACAGGT

protein sequence of NO01G00830.1

>NO01G00830.1-protein ID=NO01G00830.1-protein|Name=NO01G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=653bp
MERHTFLQGLTWLIPYNEVYNHLEEDFKDDAPLTPQWPPITYNWPATDAA
SAASAAMHPPGRQKQRCRRTLASRVILQDSSCCLHRGPKALFFAAERPQD
DATQMSFQIAMVEMNPAAFRAIVQQHMQRRRQQSRREEHEKQRIRRMERW
REEREQRTPAPADDESSCLLQPPDSSSVSSSNTTGSGDGSNGWKDREGDE
GLEEEDTKVEKEEDDDTVVPALFFRIDDHVYLVDHMAMETIVCPKGDPRA
EAPPSSSTSSEPSSLPPYAAFKFPTVTLRFWQSRLSLSPLKATQPLISAI
DAISRGLARRLWLPPSLEISPSATVIKPTAAAAAAIAAAAAAAARTGVKS
MGKELGGAGGVEAAESFLRAVETLLLLQPSSSSSSSCSSSLASSAVEDIF
LLRQAGRMFRKALVPLSYRMAGSEENKRTRGLLEEEIAWRRRWDRLLMQM
FPIRRPPSGGAGGGGKESKVESDLVESVEVATAALKAVVRERHREAMRVR
TVRAPQGEEPQTQQTQQTQQQQQALPGEGQEERGEDKAGRTGGGGGGGGG
GAGCGPGGEGEGEGEGGMHGVECAGSEAGIRAKGTYVASSLTGRTRMGGF
KKRLATATVTSAAPAQQQLQQQQPQQQQAPKSSTPAQGKGQGRKKRARTI
AT*

mRNA from alignment at chr1:209519..211588-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G00830.1 ID=NO01G00830.1|Name=NO01G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2070bp|location=Sequence derived from alignment at chr1:209519..211588- (Nannochloropsis oceanica)
AGGGAAATGGAACGCCACACCTTTCTCCAGGGGTTGACATGGCTGATACC
TTACAACGAGGTGTACAACCACCTCGAAGAAGACTTTAAAGACGACGCCC
CCTTAACGCCGCAATGGCCCCCGATCACCTATAATTGGCCTGCCACGGAT
GCTGCCAGTGCTGCGTCTGCGGCGATGCATCCGCCAGGACGCCAAAAACA
ACGCTGCCGACGCACCTTGGCCTCGCGCGTCATCTTGCAAGACAGTTCCT
GCTGCCTGCACCGGGGCCCCAAAGCCCTCTTTTTCGCCGCCGAAAGGCCG
CAAGACGATGCCACCCAAATGTCCTTCCAAATAGCTATGGTGGAGATGAA
CCCGGCGGCCTTTCGTGCTATCGTTCAGCAGCACATGCAGCGACGAAGGC
AACAGTCGCGGCGGGAGGAGCATGAGAAGCAACGTATACGACGAATGGAG
CGGTGGCGAGAGGAGCGAGAACAACGAACACCCGCACCAGCCGACGATGA
GAGCAGCTGTCTGCTGCAGCCTCCCGACTCTTCTTCCGTGTCTTCCTCCA
ATACCACCGGCAGTGGGGATGGTAGCAATGGCTGGAAGGATAGGGAAGGC
GACGAAGGCCTGGAAGAGGAGGACACCAAAGTCGAGAAGGAAGAGGACGA
CGATACTGTCGTGCCAGCACTCTTCTTCCGCATCGATGACCATGTATATC
TCGTAGATCATATGGCCATGGAAACAATCGTCTGCCCCAAAGGCGATCCC
CGGGCCGAGGCACCTCCGTCGTCCTCCACTTCCTCTGAGCCTTCCTCTCT
CCCTCCCTATGCAGCCTTCAAATTCCCCACAGTCACCTTGCGTTTCTGGC
AGTCCCGCCTGTCTTTATCACCCCTGAAGGCCACACAACCATTAATCAGC
GCAATCGATGCGATTTCTCGAGGACTTGCTCGACGATTGTGGCTTCCTCC
GTCGTTGGAAATCTCGCCGTCCGCAACAGTTATAAAACCAACAGCAGCAG
CAGCAGCAGCAATAGCAGCAGCAGCAGCAGCAGCAGCAAGAACAGGTGTC
AAGAGTATGGGAAAAGAATTAGGAGGAGCAGGAGGCGTCGAGGCAGCAGA
GAGCTTTCTAAGAGCGGTCGAGACGCTTTTGCTACTGCAGCCCTCCTCGT
CCTCCTCCTCCTCCTGCTCTTCCTCCCTCGCGTCCTCCGCTGTCGAGGAC
ATTTTCCTCCTCCGGCAGGCTGGTCGCATGTTCCGGAAGGCACTGGTGCC
GCTCTCTTACAGGATGGCAGGCTCAGAAGAGAACAAAAGGACACGAGGCC
TACTGGAGGAAGAAATAGCTTGGCGCCGGCGATGGGATCGCTTACTGATG
CAAATGTTCCCTATACGCCGCCCTCCATCGGGAGGGGCAGGAGGTGGGGG
GAAGGAGAGCAAGGTAGAGAGTGACTTAGTTGAAAGTGTGGAGGTGGCGA
CTGCGGCATTGAAGGCCGTCGTAAGGGAGAGGCATAGGGAGGCGATGAGG
GTGCGTACTGTGAGAGCACCGCAAGGGGAGGAGCCGCAGACGCAGCAGAC
GCAGCAGACGCAGCAGCAGCAGCAGGCGCTGCCAGGTGAGGGGCAGGAAG
AGAGGGGTGAAGATAAAGCAGGAAGAACAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGCTGGTTGTGGTCCTGGTGGTGAGGGGGAGGGAGAGGGGGA
GGGCGGCATGCATGGTGTGGAATGTGCGGGCTCCGAGGCAGGGATACGGG
CCAAGGGGACATATGTCGCCTCGTCCTTGACCGGGAGGACAAGGATGGGT
GGGTTCAAGAAACGATTGGCGACAGCTACGGTAACATCAGCAGCGCCAGC
ACAGCAGCAGCTGCAGCAGCAACAACCGCAGCAACAACAAGCACCAAAAT
CGTCCACCCCGGCACAAGGGAAAGGCCAAGGAAGGAAAAAGCGAGCGCGG
ACGATCGCAACGTGAAGAGATGAGGAATGAAGTTGTTTTCATAAAAGGAA
GAACGTGATAGCGAAATGGAAAATGAAGGGCGAATACGATCAACGTTTGG
TTGCTCGCATGAAAACAGGT

Coding sequence (CDS) from alignment at chr1:209519..211588-

>NO01G00830.1 ID=NO01G00830.1|Name=NO01G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=1959bp|location=Sequence derived from alignment at chr1:209519..211588- (Nannochloropsis oceanica)
ATGGAACGCCACACCTTTCTCCAGGGGTTGACATGGCTGATACCTTACAA
CGAGGTGTACAACCACCTCGAAGAAGACTTTAAAGACGACGCCCCCTTAA
CGCCGCAATGGCCCCCGATCACCTATAATTGGCCTGCCACGGATGCTGCC
AGTGCTGCGTCTGCGGCGATGCATCCGCCAGGACGCCAAAAACAACGCTG
CCGACGCACCTTGGCCTCGCGCGTCATCTTGCAAGACAGTTCCTGCTGCC
TGCACCGGGGCCCCAAAGCCCTCTTTTTCGCCGCCGAAAGGCCGCAAGAC
GATGCCACCCAAATGTCCTTCCAAATAGCTATGGTGGAGATGAACCCGGC
GGCCTTTCGTGCTATCGTTCAGCAGCACATGCAGCGACGAAGGCAACAGT
CGCGGCGGGAGGAGCATGAGAAGCAACGTATACGACGAATGGAGCGGTGG
CGAGAGGAGCGAGAACAACGAACACCCGCACCAGCCGACGATGAGAGCAG
CTGTCTGCTGCAGCCTCCCGACTCTTCTTCCGTGTCTTCCTCCAATACCA
CCGGCAGTGGGGATGGTAGCAATGGCTGGAAGGATAGGGAAGGCGACGAA
GGCCTGGAAGAGGAGGACACCAAAGTCGAGAAGGAAGAGGACGACGATAC
TGTCGTGCCAGCACTCTTCTTCCGCATCGATGACCATGTATATCTCGTAG
ATCATATGGCCATGGAAACAATCGTCTGCCCCAAAGGCGATCCCCGGGCC
GAGGCACCTCCGTCGTCCTCCACTTCCTCTGAGCCTTCCTCTCTCCCTCC
CTATGCAGCCTTCAAATTCCCCACAGTCACCTTGCGTTTCTGGCAGTCCC
GCCTGTCTTTATCACCCCTGAAGGCCACACAACCATTAATCAGCGCAATC
GATGCGATTTCTCGAGGACTTGCTCGACGATTGTGGCTTCCTCCGTCGTT
GGAAATCTCGCCGTCCGCAACAGTTATAAAACCAACAGCAGCAGCAGCAG
CAGCAATAGCAGCAGCAGCAGCAGCAGCAGCAAGAACAGGTGTCAAGAGT
ATGGGAAAAGAATTAGGAGGAGCAGGAGGCGTCGAGGCAGCAGAGAGCTT
TCTAAGAGCGGTCGAGACGCTTTTGCTACTGCAGCCCTCCTCGTCCTCCT
CCTCCTCCTGCTCTTCCTCCCTCGCGTCCTCCGCTGTCGAGGACATTTTC
CTCCTCCGGCAGGCTGGTCGCATGTTCCGGAAGGCACTGGTGCCGCTCTC
TTACAGGATGGCAGGCTCAGAAGAGAACAAAAGGACACGAGGCCTACTGG
AGGAAGAAATAGCTTGGCGCCGGCGATGGGATCGCTTACTGATGCAAATG
TTCCCTATACGCCGCCCTCCATCGGGAGGGGCAGGAGGTGGGGGGAAGGA
GAGCAAGGTAGAGAGTGACTTAGTTGAAAGTGTGGAGGTGGCGACTGCGG
CATTGAAGGCCGTCGTAAGGGAGAGGCATAGGGAGGCGATGAGGGTGCGT
ACTGTGAGAGCACCGCAAGGGGAGGAGCCGCAGACGCAGCAGACGCAGCA
GACGCAGCAGCAGCAGCAGGCGCTGCCAGGTGAGGGGCAGGAAGAGAGGG
GTGAAGATAAAGCAGGAAGAACAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGCTGGTTGTGGTCCTGGTGGTGAGGGGGAGGGAGAGGGGGAGGGCGG
CATGCATGGTGTGGAATGTGCGGGCTCCGAGGCAGGGATACGGGCCAAGG
GGACATATGTCGCCTCGTCCTTGACCGGGAGGACAAGGATGGGTGGGTTC
AAGAAACGATTGGCGACAGCTACGGTAACATCAGCAGCGCCAGCACAGCA
GCAGCTGCAGCAGCAACAACCGCAGCAACAACAAGCACCAAAATCGTCCA
CCCCGGCACAAGGGAAAGGCCAAGGAAGGAAAAAGCGAGCGCGGACGATC
GCAACGTGA

Synonyms

Publications