NO01G00750.1, NO01G00750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00750.1
Unique NameNO01G00750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length765
Alignment locationchr1:190633..192364 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:190633..192364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00750.1 vs.
Match: CBN74912.1 (proteasome subunit [Ectocarpus siliculosus])

HSP 1 Score: 347.4 bits (890), Expect = 3.700e-92
Identity = 174/254 (68.50%), Postives = 210/254 (82.68%), Query Frame = 0 
Query:    1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCADGIVLAAERKTTSKLLAPSKSSDKIYQIDGHIACVVAGLTSDANILINQARLSAQRYLYQYQETMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHHGFQLYESDPAGTFGGWTATAIGANFQAGKNLLKNEFPEGDKPTLAEGLKLAAKVLLKTMDTTTPSAEKVEFFTLKAAEKVGGRVVHATLGTEETTALLNEVSAATAPEGDM 255
            MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGIL  DGI++AAERK  SKLLAPSK+S+K Y++  + +CVVAGLT+DAN+L+N AR+SAQRYLYQY E MP+EQLV+ +C+YKQAYTQ+GGLRPFGVSFLF G+D HHGFQLY SDP+G +GGW ATAIGAN QAGK LLK ++ E  + ++ E LKLA KVL KTMD+TTPS EK+EF T+    +V G++VH  L  EE+  +L EV+A TA +GD+
Sbjct:    1 MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIIMAAERKVVSKLLAPSKTSEKTYRLYENASCVVAGLTADANLLVNHARVSAQRYLYQYGEQMPLEQLVKEVCNYKQAYTQFGGLRPFGVSFLFTGWDEHHGFQLYHSDPSGNYGGWKATAIGANNQAGKALLKTDYVE--ESSVDECLKLAVKVLNKTMDSTTPSPEKMEFTTI---TRVNGKIVHKILTDEESDKILKEVAAETATQGDV 249
The following BLAST results are available for this feature:
BLAST of NO01G00750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN74912.13.700e-9268.50proteasome subunit [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00750NO01G00750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00750.1NO01G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00750.1.cds1NO01G00750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00750.1.cds2NO01G00750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00750.1.cds3NO01G00750.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00750.1.cds4NO01G00750.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00750.1.cds5NO01G00750.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00750.1.cds6NO01G00750.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00750.1 ID=NO01G00750.1|Name=NO01G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=765bp
ATGGCAAGACGCTACGATTCGTCGACCACCACGTTCTCGCCGGAAGGCCG
TCTGCATCAGGTTGAGTACGCCATTGAGGCTATCAACAACGCCGGAACCT
GCGTGGGCATCCTCTGCGCCGACGGTATAGTCCTGGCAGCGGAACGAAAG
ACCACCAGCAAGCTTCTAGCACCATCTAAGTCCAGCGACAAGATTTACCA
GATCGACGGGCACATCGCCTGTGTGGTGGCGGGCCTGACGTCTGATGCTA
ACATTCTGATAAACCAAGCCCGTCTGTCCGCCCAACGCTACCTGTACCAG
TACCAAGAGACCATGCCCGTCGAGCAGCTCGTGCGGTCCATCTGCGACTA
CAAGCAGGCGTATACACAGTACGGAGGGCTGCGCCCTTTCGGGGTCTCCT
TCCTGTTTGCCGGCTACGACAGGCACCATGGTTTCCAGCTATACGAGTCT
GATCCTGCCGGGACCTTCGGGGGATGGACCGCCACAGCCATTGGCGCCAA
TTTTCAGGCCGGGAAAAATCTGTTGAAGAACGAATTTCCGGAGGGGGACA
AGCCTACGCTGGCGGAAGGTTTGAAGCTGGCGGCCAAGGTGTTGCTTAAG
ACGATGGATACCACCACGCCGTCCGCGGAGAAGGTGGAGTTTTTCACGCT
CAAGGCCGCGGAGAAGGTGGGGGGGAGGGTGGTTCACGCCACGCTGGGGA
CGGAGGAGACGACAGCCTTATTGAACGAGGTCAGCGCAGCCACTGCCCCT
GAGGGGGACATGTAA
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protein sequence of NO01G00750.1

>NO01G00750.1-protein ID=NO01G00750.1-protein|Name=NO01G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCADGIVLAAERK
TTSKLLAPSKSSDKIYQIDGHIACVVAGLTSDANILINQARLSAQRYLYQ
YQETMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHHGFQLYES
DPAGTFGGWTATAIGANFQAGKNLLKNEFPEGDKPTLAEGLKLAAKVLLK
TMDTTTPSAEKVEFFTLKAAEKVGGRVVHATLGTEETTALLNEVSAATAP
EGDM*
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mRNA from alignment at chr1:190633..192364+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00750.1 ID=NO01G00750.1|Name=NO01G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1732bp|location=Sequence derived from alignment at chr1:190633..192364+ (Nannochloropsis oceanica)
ATGGCAAGACGCTACGATTCGTCGACCACCACGTTCTCGCCGGAAGGTGC
GTTTTTTGCGTCCTTCAATCTATCTGCCTGTATGATTGTTGCCTGTGTCT
TCCCCCTCCCAAGCATCATCATGCCCCGTTCCACGTCCCAACCCCTTCCC
CCGCACCTGTGTCTTGAGTCCACGGTAACAGTGCAGACTACACCGCCCCT
CGCCCCTCGTCTCATGTTACCTTTTGCCCGTCTATCTCTGACCTCCTTTT
CCCCTACCCCGAAAGGCCGTCTGCATCAGGTTGAGTACGCCATTGAGGCT
ATCAACAACGCCGGAACCTGCGTGGGCATCCTCTGCGCCGACGGTATAGT
CCTGGCAGCGGAACGAAAGACCACCAGCAAGCTTCTAGCACCATCTAAGT
CCAGCGACAAGATTTACCAGATCGACGGGCACATCGCCTGTGTGGTGGCG
GGCCTGACGTCTGATGCTAACATTCTGATAAACCAAGGTGCGGAAAGCCA
AGAGGAAAAGAGAGGAAACATTCGGGCGCGGGTGAATCCTTAATGCTCTC
TAAATTTATGCGTGCTCGTGTTCGTGAATTTCTGTGGAATTCTTTCCTCG
CTCTCTGGCCCACGCGCATTGCCCGGAAGGTGTCGAGACAAGCTGTAGAA
GAACCACACCCCTCATGATCTTCCACCCCCCCCCCTCCCTCCCCCTCTCT
CCAGCCCGTCTGTCCGCCCAACGCTACCTGTACCAGTACCAAGAGACCAT
GCCCGTCGAGCAGCTCGTGCGGTCCATCTGCGACTACAAGCAGGCGTATA
CACAGTACGGAGGGCTGCGCCCTTTCGGGGTCTCCTTCCTGTTTGCCGGC
TACGACAGGTAGGAAGGACACCGCCCCCATCCCTCCCTCCATCCCTCCCT
CCCTCCATCCCTCCCTCCCTCCCTCTTTCCCTCCCTCCCTCCCATCTACC
CTATTTTGGGGGGGCAATGCACACACGTATTCAGCCCTTCCTTCCTTCCC
CCCTTCCCTATCCTCCTTCCCCAGGCACCATGGTTTCCAGCTATACGAGT
CTGATCCTGCCGGGACCTTCGGGGGATGGACCGCCACAGCCATTGGCGCC
AATTTTCAGGTATGTCTTCCTTCCCTCTCCCTCCTTCCCTCCCTCCCTCA
TCCCTCCCCACCCCCTTTCGAAATGGACGCCTCGCTTTTAGTTCCTCGTG
TGGGAGTGTTTTTCCCCACAGTGCTTCAAACGGCCTCTTCCCTGCCTCCC
TCTTTCAAGCCCGCGCTGGAGGATGGACATCAAAGATAATGAACAAGACG
CTCCTACCACCGACTCCCCCTCCCTCTCTTCCTCCCTCCCTCCCTCCCTA
GGCCGGGAAAAATCTGTTGAAGAACGAATTTCCGGAGGGGGACAAGCCTA
CGCTGGCGGAAGGTTTGAAGCTGGCGGCCAAGGTGTTGCTTAAGACGATG
GATACCACCACGCCGTCCGCGGAGAAGGTAAGGGAGGGAGGGAAGGAGGG
ATGTAGGGATAAATTGACTCGACGGGGAACGATAGCAAGTCAACCCGGCC
ATGCATCGGGCACTCAACCATATCATATCTCCCTCCCCTTTTCCCTCTAG
GTGGAGTTTTTCACGCTCAAGGCCGCGGAGAAGGTGGGGGGGAGGGTGGT
TCACGCCACGCTGGGGACGGAGGAGACGACAGCCTTATTGAACGAGGTCA
GCGCAGCCACTGCCCCTGAGGGGGACATGTAA
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Coding sequence (CDS) from alignment at chr1:190633..192364+

>NO01G00750.1 ID=NO01G00750.1|Name=NO01G00750.1|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at chr1:190633..192364+ (Nannochloropsis oceanica)
ATGGCAAGACGCTACGATTCGTCGACCACCACGTTCTCGCCGGAAGGCCG
TCTGCATCAGGTTGAGTACGCCATTGAGGCTATCAACAACGCCGGAACCT
GCGTGGGCATCCTCTGCGCCGACGGTATAGTCCTGGCAGCGGAACGAAAG
ACCACCAGCAAGCTTCTAGCACCATCTAAGTCCAGCGACAAGATTTACCA
GATCGACGGGCACATCGCCTGTGTGGTGGCGGGCCTGACGTCTGATGCTA
ACATTCTGATAAACCAAGCCCGTCTGTCCGCCCAACGCTACCTGTACCAG
TACCAAGAGACCATGCCCGTCGAGCAGCTCGTGCGGTCCATCTGCGACTA
CAAGCAGGCGTATACACAGTACGGAGGGCTGCGCCCTTTCGGGGTCTCCT
TCCTGTTTGCCGGCTACGACAGGCACCATGGTTTCCAGCTATACGAGTCT
GATCCTGCCGGGACCTTCGGGGGATGGACCGCCACAGCCATTGGCGCCAA
TTTTCAGGCCGGGAAAAATCTGTTGAAGAACGAATTTCCGGAGGGGGACA
AGCCTACGCTGGCGGAAGGTTTGAAGCTGGCGGCCAAGGTGTTGCTTAAG
ACGATGGATACCACCACGCCGTCCGCGGAGAAGGTGGAGTTTTTCACGCT
CAAGGCCGCGGAGAAGGTGGGGGGGAGGGTGGTTCACGCCACGCTGGGGA
CGGAGGAGACGACAGCCTTATTGAACGAGGTCAGCGCAGCCACTGCCCCT
GAGGGGGACATGTAA
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Synonyms
Publications