NO01G00730.2, NO01G00730.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00730.2
Unique NameNO01G00730.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1020
Alignment locationchr1:186656..188529 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:186656..188529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00730.2 vs.
Match: CBJ48677.1 (HSPC140 [Ectocarpus siliculosus])

HSP 1 Score: 225.3 bits (573), Expect = 2.800e-55
Identity = 134/339 (39.53%), Postives = 187/339 (55.16%), Query Frame = 0 
Query:    2 DASEVYDRQIRLWGMEAQKRMQEARVLFCGLRALPAEICKNVILAGINVALLDAETVTHEDLCAQFFLRPEHVGMNRAEACLPGVREMNPLATVECHTSPPSSLPDTFFSSFDIIVASDLPPSQLIRLDALMRERGREAGRGGGFMYADTFGLHGWAFVDLGEGFKGRMDEASKGGAGPGEKEGGKPAAPKEFTLSYPSLQEALSEPWSSLKNRF-PVPRVFVMGRLLGIFDEKHGCRPSPSASGKEVALFVSESQAALLENGLEEGFLSEE------ELRALAISGRTELSPVCAVIGGILGQEILKAVSRKGEPALNCFLWDGETHEGRVIQVPPPA 334
            DASE YDRQIRLWG+EAQ+RM  +RVLF G+  +  E CKN++LAG++  L D  +    D+ A F L  + VG NRAEA     RE+N LA+V   T P   LPD FF +F ++V S   P+Q  R+  L R+          F   +TFG  G+ F DLG     R             +E G+        + +PS++EA +  WSSLK+R+ P P+ FV  +++ +F EK G RP P+ + +  A+     ++AL  NGL   FL E          +L  +   E+SPVCA++GGILGQE++KA+S KG PA NC    G T E ++ + P  A
Sbjct:   26 DASEQYDRQIRLWGVEAQQRMSGSRVLFSGINGVTVEGCKNLLLAGVSATLQDQASAQPSDIGANFLLSGQDVGKNRAEASADNARELNRLASVSSETRPLEELPDDFFKAFRVVVLSGAAPAQRRRVSTLCRK------FNAAFYTVETFGYDGFLFCDLGPKHVYR-------------REIGQ-ILSDPMDMEFPSVEEASAAQWSSLKDRWGPPPKPFVTAQVVALFQEKFGRRPLPADTPECAAVI----ESALENNGLPPDFLGEAGPVAGGAAASLCATATAEVSPVCAILGGILGQEVIKAISGKGAPACNCVALTGMTGEAKMFRAPRKA 340
The following BLAST results are available for this feature:
BLAST of NO01G00730.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ48677.12.800e-5539.53HSPC140 [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00730NO01G00730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00730.2NO01G00730.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00730.2.cds1NO01G00730.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00730.2.cds2NO01G00730.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00730.2.cds3NO01G00730.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00730.2.cds4NO01G00730.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00730.2.cds5NO01G00730.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00730.2.cds6NO01G00730.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00730.2 ID=NO01G00730.2|Name=NO01G00730.2|organism=Nannochloropsis oceanica|type=mRNA|length=1020bp
CAGACGGCCATGGACGCTTCAGAAGTTTACGACCGACAAATCCGCCTGTG
GGGGATGGAAGCTCAAAAACGTATGCAGGAAGCCCGGGTACTGTTTTGTG
GCTTACGGGCGCTGCCAGCTGAGATCTGCAAAAACGTCATCCTTGCCGGC
ATCAATGTCGCACTTCTTGATGCCGAGACCGTGACACACGAGGATTTGTG
TGCGCAATTTTTTTTACGGCCAGAACACGTGGGAATGAACCGTGCAGAAG
CCTGCCTCCCGGGTGTCCGAGAGATGAACCCGCTGGCCACCGTTGAGTGC
CATACTTCTCCCCCTTCCTCCCTCCCCGACACCTTCTTCTCTTCCTTCGA
CATCATCGTCGCTTCAGACCTCCCTCCCTCCCAGCTTATCCGTCTCGATG
CCCTCATGCGGGAACGAGGGAGGGAGGCGGGGAGGGGGGGAGGGTTTATG
TACGCCGACACGTTCGGGCTGCATGGATGGGCCTTCGTTGATTTGGGGGA
GGGTTTCAAGGGGCGGATGGATGAGGCGAGTAAAGGAGGAGCAGGACCAG
GAGAAAAAGAGGGGGGAAAGCCCGCGGCACCGAAGGAGTTCACGCTTTCC
TACCCCTCCCTTCAAGAAGCGCTTTCAGAGCCGTGGTCCTCTTTGAAAAA
TCGCTTTCCAGTGCCACGTGTTTTTGTGATGGGTCGTCTCCTTGGCATCT
TCGACGAGAAGCACGGGTGCCGCCCCTCCCCCTCTGCCAGCGGCAAGGAG
GTGGCGTTGTTCGTGTCCGAGAGCCAAGCGGCCCTGCTGGAGAATGGCTT
AGAAGAAGGATTTTTGAGCGAGGAGGAACTTCGTGCACTCGCTATCTCAG
GTCGGACGGAGCTGTCGCCGGTGTGTGCCGTCATTGGCGGTATTTTGGGG
CAAGAGATATTAAAGGCTGTTTCACGTAAAGGTGAGCCAGCCCTTAATTG
CTTCCTGTGGGATGGGGAGACGCATGAAGGGAGGGTGATCCAGGTACCGC
CGCCTGCGGTAAAGAGGTAG
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protein sequence of NO01G00730.2

>NO01G00730.2-protein ID=NO01G00730.2-protein|Name=NO01G00730.2|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MDASEVYDRQIRLWGMEAQKRMQEARVLFCGLRALPAEICKNVILAGINV
ALLDAETVTHEDLCAQFFLRPEHVGMNRAEACLPGVREMNPLATVECHTS
PPSSLPDTFFSSFDIIVASDLPPSQLIRLDALMRERGREAGRGGGFMYAD
TFGLHGWAFVDLGEGFKGRMDEASKGGAGPGEKEGGKPAAPKEFTLSYPS
LQEALSEPWSSLKNRFPVPRVFVMGRLLGIFDEKHGCRPSPSASGKEVAL
FVSESQAALLENGLEEGFLSEEELRALAISGRTELSPVCAVIGGILGQEI
LKAVSRKGEPALNCFLWDGETHEGRVIQVPPPAVKR*
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mRNA from alignment at chr1:186656..188529-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00730.2 ID=NO01G00730.2|Name=NO01G00730.2|organism=Nannochloropsis oceanica|type=mRNA|length=1874bp|location=Sequence derived from alignment at chr1:186656..188529- (Nannochloropsis oceanica)
CAGACGGCCATGGACGCTTCAGAAGTTTACGACCGACAAATCCGCCTGTG
GGGGATGGAAGCTCAAAAACGTATGCAGGAAGCCCGGGTACTGTTTTGTG
GCTTACGGGCGCTGCCAGCTGAGGTACGAAAGAGAGGATGGAAGGAGGGA
GGGAGGGAGGGAGAAGGGGAAAGAGAAGAAGAAGGGTAGGAATGAGGAGG
GGTGGAAGCGGTTTTCAAATGAAAAGTCCGTTTGATGTGTAACAATATGT
CGCCTTTTCATTTGTCGACTGATAAAGCCTTCCCTGCACCCTACCCCCTA
TTCAATCCCTCGCTTCCTCCATCAATGCCTCCCTCGGCTCCCCAGATCTG
CAAAAACGTCATCCTTGCCGGCATCAATGTCGCACTTCTTGATGCCGAGA
CCGTGACACACGAGGATTTGTGTGCGCAATTTTTTTTACGGCCAGAACAC
GTGGGAATGAACGTATGTCCAGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAAGGAAGGAAGCAAGGACGGGCAGGGAAGGGGGGGAAGGAAAGAA
GGAGCAAGCGTAATCATCGTTCAAGCCCTTCTATTCATGCTCGTATACGA
TGATCCTTGCTTCCATACCAGCGTGCAGAAGCCTGCCTCCCGGGTGTCCG
AGAGATGAACCCGCTGGCCACCGTTGAGTGCCATACTTCTCCCCCTTCCT
CCCTCCCCGACACCTTCTTCTCTTCCTTCGACATCATCGTCGCTTCAGAC
CTCCCTCCCTCCCAGCTTATCCGTCTCGATGCCCTCATGCGGGAACGAGG
GAGGGAGGCGGGGAGGGGGGGAGGGTTTATGTACGCCGACACGTTCGGGC
TGCATGGATGGGCCTTCGTTGATTTGGGGGAGGGTTTCAAGGGGCGGATG
GATGAGGCGAGTAAAGGAGGAGCAGGACCAGGAGAAAAAGAGGGGGGAAA
GGTAGGTGGGAAGGAGGGAGGGAGGGAGGAGGGGGGGGGGAGGGAGGGAG
GGAGGGAGGAAGGGGGGGGGGAGGGAGAGAAGGAGGGAGGACGGGTGCTG
CACGTGTAAGGTTACAGACGATTTTGACACCAACATTTCTCCTTCCCTCC
CTCCCTCCCTCCCTCCATTTCTCTTTCCCTCCCTCCTTCCAGCCCGCGGC
ACCGAAGGAGTTCACGCTTTCCTACCCCTCCCTTCAAGAAGCGCTTTCAG
AGCCGTGGTCCTCTTTGAAAAATCGCTTTCCAGTGCCACGTGTTTTTGTG
ATGGGTCGTCGTACGTAGGGAGGAAGGGAGGAAGGGAGGGAGAAAGGGAG
GGTGAGTTTTATATCTTGGTCAGCATGTGTACCGGTAAGCAGAACGTAGT
CCTCTCCTCTCTCTCGAGCTCACGTGCTTCCCCTCCCTCCCTCCCTCCCT
CCCTCACGTAGTCCTTGGCATCTTCGACGAGAAGCACGGGTGCCGCCCCT
CCCCCTCTGCCAGCGGCAAGGAGGTGGCGTTGTTCGTGTCCGAGAGCCAA
GCGGCCCTGCTGGAGAATGGCTTAGAAGAAGGATTTTTGAGCGAGGAGGA
ACTTCGGTAAGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGATAAGATGGA
AGGTCAACTTGGCTCTTACTCATGCATGACCATGAACTCCTCCTCCCTCC
TTCCTTTCTTCCCTCCCTCCTTCCGTCCAACCCTCAGTGCACTCGCTATC
TCAGGTCGGACGGAGCTGTCGCCGGTGTGTGCCGTCATTGGCGGTATTTT
GGGGCAAGAGATATTAAAGGCTGTTTCACGTAAAGGTGAGCCAGCCCTTA
ATTGCTTCCTGTGGGATGGGGAGACGCATGAAGGGAGGGTGATCCAGGTA
CCGCCGCCTGCGGTAAAGAGGTAG
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Coding sequence (CDS) from alignment at chr1:186656..188529-

>NO01G00730.2 ID=NO01G00730.2|Name=NO01G00730.2|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at chr1:186656..188529- (Nannochloropsis oceanica)
ATGGACGCTTCAGAAGTTTACGACCGACAAATCCGCCTGTGGGGGATGGA
AGCTCAAAAACGTATGCAGGAAGCCCGGGTACTGTTTTGTGGCTTACGGG
CGCTGCCAGCTGAGATCTGCAAAAACGTCATCCTTGCCGGCATCAATGTC
GCACTTCTTGATGCCGAGACCGTGACACACGAGGATTTGTGTGCGCAATT
TTTTTTACGGCCAGAACACGTGGGAATGAACCGTGCAGAAGCCTGCCTCC
CGGGTGTCCGAGAGATGAACCCGCTGGCCACCGTTGAGTGCCATACTTCT
CCCCCTTCCTCCCTCCCCGACACCTTCTTCTCTTCCTTCGACATCATCGT
CGCTTCAGACCTCCCTCCCTCCCAGCTTATCCGTCTCGATGCCCTCATGC
GGGAACGAGGGAGGGAGGCGGGGAGGGGGGGAGGGTTTATGTACGCCGAC
ACGTTCGGGCTGCATGGATGGGCCTTCGTTGATTTGGGGGAGGGTTTCAA
GGGGCGGATGGATGAGGCGAGTAAAGGAGGAGCAGGACCAGGAGAAAAAG
AGGGGGGAAAGCCCGCGGCACCGAAGGAGTTCACGCTTTCCTACCCCTCC
CTTCAAGAAGCGCTTTCAGAGCCGTGGTCCTCTTTGAAAAATCGCTTTCC
AGTGCCACGTGTTTTTGTGATGGGTCGTCTCCTTGGCATCTTCGACGAGA
AGCACGGGTGCCGCCCCTCCCCCTCTGCCAGCGGCAAGGAGGTGGCGTTG
TTCGTGTCCGAGAGCCAAGCGGCCCTGCTGGAGAATGGCTTAGAAGAAGG
ATTTTTGAGCGAGGAGGAACTTCGTGCACTCGCTATCTCAGGTCGGACGG
AGCTGTCGCCGGTGTGTGCCGTCATTGGCGGTATTTTGGGGCAAGAGATA
TTAAAGGCTGTTTCACGTAAAGGTGAGCCAGCCCTTAATTGCTTCCTGTG
GGATGGGGAGACGCATGAAGGGAGGGTGATCCAGGTACCGCCGCCTGCGG
TAAAGAGGTAG
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Synonyms
Publications