NO01G00670.1, NO01G00670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00670.1
Unique NameNO01G00670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1170
Alignment locationchr1:172097..174196 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:172097..174196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00670.1 vs.
Match: EWM28995.1 (serine threonine protein kinase, partial [Nannochloropsis gaditana])

HSP 1 Score: 392.9 bits (1008), Expect = 1.200e-105
Identity = 193/241 (80.08%), Postives = 203/241 (84.23%), Query Frame = 0 
Query:   48 TLVSFRSQESYQGAGEGAGGG--------------TPVPVGKDEVVEHSPQGRYVRFNTRLDGCAYKEIWKAFDTSEGVEVAWNTLCLDLVPRSDKKRIVNEIQILERLDHDNIMTFYTSWYNRHTKHIVFITELMNNNNNGSLYAFVQPIPVLRWRIVKRWLRQILEGLAFLHSQTPPIIHRNINCENIFIIANTGELKIGDLGLSTVSHRAESCVGTAPFMAPELFEEDYDEKVDIYAL 275
            +L SF S E       G G G                VPVGKD VVEHSPQGRYVRFNTRLD CAYKEIWKAFDTSEGVEVAWNTL L+ VPRSDKKRI+NEI+ILE++DHDNI+TFYTSWYNRHTK IVFITELMNN+NNGSLYAFVQPIP+LRWRIVKRWLRQILEGLAFLHSQ PPIIHRNINCENIFIIANTGELKIGDLGLSTVS RAESCVGTAPFMAPELFEEDYDEKV +  L
Sbjct:   41 SLASFASHEGLPTGEAGGGAGKRGMIGGHAASTAVAVVPVGKDGVVEHSPQGRYVRFNTRLDACAYKEIWKAFDTSEGVEVAWNTLFLEEVPRSDKKRILNEIRILEKIDHDNIITFYTSWYNRHTKQIVFITELMNNHNNGSLYAFVQPIPILRWRIVKRWLRQILEGLAFLHSQDPPIIHRNINCENIFIIANTGELKIGDLGLSTVSQRAESCVGTAPFMAPELFEEDYDEKVGVTPL 281
The following BLAST results are available for this feature:
BLAST of NO01G00670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28995.11.200e-10580.08serine threonine protein kinase, partial [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00670NO01G00670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00670.1NO01G00670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00670.1.cds1NO01G00670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00670.1.cds2NO01G00670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00670.1.cds3NO01G00670.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00670.1.cds4NO01G00670.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00670.1.cds5NO01G00670.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00670.1.cds6NO01G00670.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00670.1 ID=NO01G00670.1|Name=NO01G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1170bp
ATGGGGGATAAAGAGACGGAGACCAAAGACTCGGTCGTCAAAAGCGCCGT
CGAATCTGCCATCAGCGCGAGCAACGACCCGCCCTCCTTCGGCCCCTCCC
TGCCTTCCTCTCCGCGAGCTTCTAAACCTCCGAACGTGGGCACCCTCGTG
TCGTTTCGTTCCCAGGAGTCTTACCAGGGAGCAGGGGAAGGTGCAGGAGG
GGGGACACCGGTGCCGGTGGGCAAGGATGAGGTGGTGGAGCACAGTCCCC
AAGGGAGGTATGTGCGGTTCAACACACGGCTGGACGGGTGCGCCTATAAG
GAGATATGGAAGGCCTTTGACACGAGTGAGGGGGTGGAGGTGGCGTGGAA
CACGCTCTGCCTCGACTTGGTGCCGCGCTCGGACAAAAAGAGGATCGTGA
ATGAGATCCAGATTCTGGAGAGGCTGGATCATGACAACATCATGACGTTC
TACACCTCGTGGTATAACCGGCACACCAAGCACATCGTCTTCATCACCGA
GCTCATGAACAACAATAACAATGGTTCCCTCTATGCCTTTGTGCAGCCCA
TCCCGGTCCTCCGCTGGCGGATCGTCAAGCGGTGGCTCCGACAGATCCTC
GAGGGCCTCGCTTTTTTACACTCGCAGACCCCCCCCATCATTCACCGTAA
CATCAACTGCGAGAATATATTTATCATTGCCAACACGGGCGAACTCAAAA
TTGGCGACCTTGGCCTCTCCACCGTCAGCCATCGGGCCGAGTCGTGCGTT
GGCACTGCACCCTTCATGGCACCGGAGCTTTTCGAAGAGGACTACGACGA
GAAGGTGGATATATACGCCTTGGGCATGTCTATTCTGCAGATGCTGACGA
AGCAAGCCCCCTACACGGAGTGCAGCAGTGTCGGAGAGATCTACCAGCGG
GTCACCAACCACGTCCCTCCTTCTTCCCTCCAAACTATCGCCCTCCCCTC
CGCTCGTGCCTTCATCGACTGCTGCCTGGCCCCCAATCCGGCCCTCCGTC
CCTCCGCATCAGAGCTCCTCGAGCATCCTTTCCTTAAGGAGGACAAGGAG
GTGGATGCCTTAGACGTGGTTCTCACCGCCCTTCCCTCCCCCCTCCCCTC
ACACCCGGCGGGGGAGGCGAAGGAGGAGGAGCGGGGGGAAGGGGGGGGGG
GGAAGGGCCCGGGTCGGTGA
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protein sequence of NO01G00670.1

>NO01G00670.1-protein ID=NO01G00670.1-protein|Name=NO01G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MGDKETETKDSVVKSAVESAISASNDPPSFGPSLPSSPRASKPPNVGTLV
SFRSQESYQGAGEGAGGGTPVPVGKDEVVEHSPQGRYVRFNTRLDGCAYK
EIWKAFDTSEGVEVAWNTLCLDLVPRSDKKRIVNEIQILERLDHDNIMTF
YTSWYNRHTKHIVFITELMNNNNNGSLYAFVQPIPVLRWRIVKRWLRQIL
EGLAFLHSQTPPIIHRNINCENIFIIANTGELKIGDLGLSTVSHRAESCV
GTAPFMAPELFEEDYDEKVDIYALGMSILQMLTKQAPYTECSSVGEIYQR
VTNHVPPSSLQTIALPSARAFIDCCLAPNPALRPSASELLEHPFLKEDKE
VDALDVVLTALPSPLPSHPAGEAKEEERGEGGGGKGPGR*
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mRNA from alignment at chr1:172097..174196+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00670.1 ID=NO01G00670.1|Name=NO01G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2100bp|location=Sequence derived from alignment at chr1:172097..174196+ (Nannochloropsis oceanica)
ATGGGGGATAAAGAGACGGAGACCAAAGACTCGGTCGTCAAAAGCGCCGT
CGAATCTGCCATCAGCGCGAGCAACGACCCGCCCTCCTTCGGCCCCTCCC
TGCCTTCCTCTCCGCGAGCTTCTAAACCTCCGAACGTGGGCACCCTCGTG
TCGTTTCGTTCCCAGGAGTCTTACCAGGGAGCAGGGGAAGGTGCAGGAGG
GGGGACACCGGTGCCGGTGGGCAAGGATGAGGTGGTGGAGCACAGTCCCC
AAGGGAGGTAGGTCTGAAGAGAGGGAGGGAGGGAGGGAGGGAGTGGAGGC
ATGGGCATGCGGCGAGGGTTATATTTGGGGTCGTTTCTGACCGAAAGCGT
GCCGCTGTTGCTCATCTATTAACGCACCGCACTTGCCTCCCTCCATTCCC
CCCTTCTCTCCCTCTCCCTTCCCGGAAGGTATGTGCGGTTCAACACACGG
CTGGACGGGTGCGCCTATAAGGAGATATGGAAGGCCTTTGACACGAGTGA
GGGGGTGGAGGTGGCGTGGAACACGCTCTGCCTCGACTTGGTGCCGCGCT
CGGACAAAAAGAGGTGAGTCGAACGCACATGCTTATCAAATACAATATAA
GTTATTTAATCCATTAAGTAGTGGGTAATGAAGGTCGAAGCTAATTAGGG
AAGTACTAAGGAATGAAGTCAATTAATTATAAGAATTCAGAAGTGAAGCT
CATCGATGGATTAGTAAGAAGTGAAGCTAATCAGTGAAGTACAAAGCAAC
CAACCCAAGCACTCAAATGATCACGTATTATCCATCCCATCCTCAGGATC
GTGAATGAGATCCAGATTCTGGAGAGGCTGGATCATGACAACATCATGAC
GTTCTACACCTCGTGGTATAACCGGCACACCAAGCACATCGTCTTCATCA
CCGAGCTCATGAACAACAATAACAATGGTTCCCTCTATGCCTTTGTGCAG
CCCATCCCGGTCCTCCGCTGGCGGATCGTCAAGCGGTGGCTCCGACAGAT
CCTCGAGGGCCTCGCTTTTTTACACTCGCAGGTACCCTCTTCCCTCTCTC
CCTCCCTCCCTCCCTCCCTTTCTTTCCGCTGTATCCACATGTCTGACATC
CACCCGTCCATCCCCTTCCTATCCTTCCCTTTCCCTCCCCCTTCCCTCCC
CCTCCCCCTTCCTTCCCTCCCCCTCCCCTCCCCCTTCCCTCCCCCTCACC
CCAGACCCCCCCCATCATTCACCGTAACATCAACTGCGAGAATATATTTA
TCATTGCCAACACGGGCGAACTCAAAATTGGCGACCTTGGCCTCTCCACC
GTCAGGTACCCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCCTCCGT
CTGCCTGCTTCATGGCCACGACCTGCTCATCCCTCCTCCGTGCCCTGTCC
CCCCTTCCCTTCTTCCACACCTCATCCTTCGTATCCCTCCCTGCCCTCCC
TCCCGCCCTCCCTCCCTCCCCCCCCCCCCCTCCCTCCCCCCTCCCTCCCT
CCCTCCCTCCCTAGCCATCGGGCCGAGTCGTGCGTTGGCACTGCACCCTT
CATGGCACCGGAGCTTTTCGAAGAGGACTACGACGAGAAGGTACGCCCTC
CCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTTCCCCCCTCATTTGAAGGC
TCATCGGGCATACCACAAGGACTCTCGTATCTTCCTACTGCCCACACCGC
TTGGCCCCCTCTCCCTCCCTCTCTCCTTACCCAGGTGGATATATACGCCT
TGGGCATGTCTATTCTGCAGATGCTGACGAAGCAAGCCCCCTACACGGAG
TGCAGCAGTGTCGGAGAGATCTACCAGCGGGTCACCAACCACGTCCCTCC
TTCTTCCCTCCAAACTATCGCCCTCCCCTCCGCTCGTGCCTTCATCGACT
GCTGCCTGGCCCCCAATCCGGCCCTCCGTCCCTCCGCATCAGAGCTCCTC
GAGCATCCTTTCCTTAAGGAGGACAAGGAGGTGGATGCCTTAGACGTGGT
TCTCACCGCCCTTCCCTCCCCCCTCCCCTCACACCCGGCGGGGGAGGCGA
AGGAGGAGGAGCGGGGGGAAGGGGGGGGGGGGAAGGGCCCGGGTCGGTGA
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Coding sequence (CDS) from alignment at chr1:172097..174196+

>NO01G00670.1 ID=NO01G00670.1|Name=NO01G00670.1|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at chr1:172097..174196+ (Nannochloropsis oceanica)
ATGGGGGATAAAGAGACGGAGACCAAAGACTCGGTCGTCAAAAGCGCCGT
CGAATCTGCCATCAGCGCGAGCAACGACCCGCCCTCCTTCGGCCCCTCCC
TGCCTTCCTCTCCGCGAGCTTCTAAACCTCCGAACGTGGGCACCCTCGTG
TCGTTTCGTTCCCAGGAGTCTTACCAGGGAGCAGGGGAAGGTGCAGGAGG
GGGGACACCGGTGCCGGTGGGCAAGGATGAGGTGGTGGAGCACAGTCCCC
AAGGGAGGTATGTGCGGTTCAACACACGGCTGGACGGGTGCGCCTATAAG
GAGATATGGAAGGCCTTTGACACGAGTGAGGGGGTGGAGGTGGCGTGGAA
CACGCTCTGCCTCGACTTGGTGCCGCGCTCGGACAAAAAGAGGATCGTGA
ATGAGATCCAGATTCTGGAGAGGCTGGATCATGACAACATCATGACGTTC
TACACCTCGTGGTATAACCGGCACACCAAGCACATCGTCTTCATCACCGA
GCTCATGAACAACAATAACAATGGTTCCCTCTATGCCTTTGTGCAGCCCA
TCCCGGTCCTCCGCTGGCGGATCGTCAAGCGGTGGCTCCGACAGATCCTC
GAGGGCCTCGCTTTTTTACACTCGCAGACCCCCCCCATCATTCACCGTAA
CATCAACTGCGAGAATATATTTATCATTGCCAACACGGGCGAACTCAAAA
TTGGCGACCTTGGCCTCTCCACCGTCAGCCATCGGGCCGAGTCGTGCGTT
GGCACTGCACCCTTCATGGCACCGGAGCTTTTCGAAGAGGACTACGACGA
GAAGGTGGATATATACGCCTTGGGCATGTCTATTCTGCAGATGCTGACGA
AGCAAGCCCCCTACACGGAGTGCAGCAGTGTCGGAGAGATCTACCAGCGG
GTCACCAACCACGTCCCTCCTTCTTCCCTCCAAACTATCGCCCTCCCCTC
CGCTCGTGCCTTCATCGACTGCTGCCTGGCCCCCAATCCGGCCCTCCGTC
CCTCCGCATCAGAGCTCCTCGAGCATCCTTTCCTTAAGGAGGACAAGGAG
GTGGATGCCTTAGACGTGGTTCTCACCGCCCTTCCCTCCCCCCTCCCCTC
ACACCCGGCGGGGGAGGCGAAGGAGGAGGAGCGGGGGGAAGGGGGGGGGG
GGAAGGGCCCGGGTCGGTGA
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Synonyms
Publications