NO01G00660.1, NO01G00660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00660.1
Unique NameNO01G00660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1989
Alignment locationchr1:169558..171695 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:169558..171695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00660.1 vs.
Match: EWM29000.1 (pterin-4-alpha-carbinolamine dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 152.1 bits (383), Expect = 1.200e-33
Identity = 77/127 (60.63%), Postives = 91/127 (71.65%), Query Frame = 0 
Query:    6 ILRPPTAFQRIRAFLSTSTSQSTPPTPPKKVPRLSPQAVKVALTMDLPGWADVKG--RDALEKTYLFKDFGEAWGFMSRAALLAEKHDHHPEWFNVYNKVHVVLTTHDAGGVSQKDVAMGKAMDALV 131
            +L   +AF  +   + T  SQ       +++P LS QA   AL  DL GW DVKG  RDA+EKT++F DF EAWGFMSR ALLAE+H+HHPEW NVYNKVHVVLTTHDAGGVSQKDV + KAMD +V
Sbjct:   22 LLHGTSAFHNVHCNV-TRPSQPFSTVGSQRIPHLSKQARAAALKEDLAGWVDVKGGERDAVEKTFIFHDFNEAWGFMSRVALLAEQHNHHPEWSNVYNKVHVVLTTHDAGGVSQKDVTLAKAMDTIV 147
The following BLAST results are available for this feature:
BLAST of NO01G00660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29000.11.200e-3360.63pterin-4-alpha-carbinolamine dehydratase [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00660NO01G00660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00660.1NO01G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00660.1.cds1NO01G00660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00660.1.cds2NO01G00660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00660.1 ID=NO01G00660.1|Name=NO01G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1989bp
GGGGAATGAGCGCCCGCTGCCCTGAGAAAAAGGAGGGGGAGGGGGGAGAG
ACGGAGGGAATGAGTTATGAAGTCGAGGTGGAGGTGATGCAGTCATCCCC
ACTTCTCTTGGATCCACCTATGCGACAACAAGAGCAACCGCATAAATGTG
CCTTCTCTGCTATCTGTGTGGAGTGTGGTGGTATGGAGAGACCACGGAAG
CCCATGTCCGTGCCCAGGAAGGAGGGAATGCGGCCACTTATCGGCCAGAT
GAGTTGACCACAATATCTTATCCTTCATTCCTGACCGCCCATGGATTTTC
CTCCTATTCTCCCACATGTGTTTGTGGTAACAGTGGCGAGGGTGGAGGGT
GGTAGTAGCACAAGGAGGAAGAGGATTGAGGAATGGAAGAGGAGGATAGC
CAAGAATGTGGCCGCCACCACTTCTCAAGCAGCGATTGATCAACTCAGAT
AACTGAAGACCGCAACCGAACACAATGGCCGGGACCACAGACACAGACAC
AGTCAGCTGGAGTGGACGCGTGTGATGTACAAGTCTTCAGTGCTGGGGCA
TTGTATGGCTCGTCGCCTGGCATGAAAGACAAAAAAGCAAGAAGCTGCAC
GATTCCACACCGTGAGAGTCACTGCTTTAAATTTTTTACACGACGTCACC
GGTGGCCTTCCCACACGCGCGCGCCTTTTTCTGGGATCCTTGCGCCCGTA
TTCCTATGTTTTTGTTTCACAGCTCGATTCATCACTTAAAGATCGTCTCA
TCCTCCTACCACTGCAAGAGTAAGGTTCGAAAATGCAGCATCGGTGCATC
CTCCGCCCTCCCACGGCATTCCAACGCATCAGGGCCTTCCTCAGCACCAG
CACCAGCCAATCAACACCCCCAACCCCACCGAAAAAGGTGCCGCGTCTGT
CCCCGCAAGCCGTGAAGGTAGCCTTGACCATGGACTTGCCTGGCTGGGCG
GATGTGAAGGGACGCGATGCCTTGGAAAAGACGTACCTCTTTAAAGACTT
CGGGGAGGCCTGGGGCTTCATGTCCCGCGCGGCCCTCTTGGCGGAAAAGC
ACGACCACCACCCGGAATGGTTCAACGTCTACAACAAAGTGCATGTGGTC
TTAACCACACATGATGCTGGGGGGGTCAGTCAGAAGGACGTTGCGATGGG
TAAAGCCATGGATGCTCTGGTAGTTGAGAAGCCGCGCTCGAGCTCCTAGA
GAGTTGAGTAGAGAGTAGTGCTAATGTGCATATGCAGAGTGAGGAGACAA
TAAACTTATTGTGAATAGAATCGAAGGCAAGCAGAAAAGAAGAAAAAAGA
AAAGAAGGAGGACAAACCCAGAAAAAAATAAGAAGCTGGAGAAGAAGGGT
TATAGTGACTTATCTCACCACTTCACTACAGTGTAAGACGCAGTGCTTTG
ACTTGTTTTCTTTACCTGCTCCTTTCCCACTCCTGCCCCCCCCTCACCCT
CAACAACACGACCAATATACGTTCCGATACGGATAGCGACACACGTCCCT
AGACCTTTCCCCCCCCTCCTCCTCTTCCTCCTCTTTTTTCGCCCACACCG
CAGGCCGCCACTCCTTCCCCATCAAGCTCGACCATATCCCATCCCTCACA
CAACAGAAGGACACAACATTCATGCACAAGCCCTCACTGAATGGAAGGTC
AAATACATCACCGTCCCCTCCCTCTCCCCTTCCTCCTCCTCCTCCCTCCT
CCTCTCCTCCATGTCTTCGTAGATACACAATTCTCTCAGGCCCTTTGGTA
AATTCGTAGGACGTGAGGGAGGAGACAGCAAGGAAGATGTGAAGGACGAG
AAGGAGGAAGGCTATGCCGTACAAGCACCAGAGGAGGAGGGAGAGGGAGA
GGGGGAGGAGGTTGGCAAGGACGTAGTCGACCAAGTCAGGGCTTCCTCTA
GGAGGGGAGGGAAGGGGGGAAAGAGAGAGAGGGGAGAAATGAGATGAATC
GGCTCCCATCGCGTCCATTAAGGGAGGTTCCCAACGTTT
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protein sequence of NO01G00660.1

>NO01G00660.1-protein ID=NO01G00660.1-protein|Name=NO01G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MQHRCILRPPTAFQRIRAFLSTSTSQSTPPTPPKKVPRLSPQAVKVALTM
DLPGWADVKGRDALEKTYLFKDFGEAWGFMSRAALLAEKHDHHPEWFNVY
NKVHVVLTTHDAGGVSQKDVAMGKAMDALVVEKPRSSS*
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mRNA from alignment at chr1:169558..171695-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00660.1 ID=NO01G00660.1|Name=NO01G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2138bp|location=Sequence derived from alignment at chr1:169558..171695- (Nannochloropsis oceanica)
GGGGAATGAGCGCCCGCTGCCCTGAGAAAAAGGAGGGGGAGGGGGGAGAG
ACGGAGGGAATGAGTTATGAAGTCGAGGTGGAGGTGATGCAGTCATCCCC
ACTTCTCTTGGATCCACCTATGCGACAACAAGAGCAACCGCATAAATGTG
CCTTCTCTGCTATCTGTGTGGAGTGTGGTGGTATGGAGAGACCACGGAAG
CCCATGTCCGTGCCCAGGAAGGAGGGAATGCGGCCACTTATCGGCCAGAT
GAGTTGACCACAATATCTTATCCTTCATTCCTGACCGCCCATGGATTTTC
CTCCTATTCTCCCACATGTGTTTGTGGTAACAGTGGCGAGGGTGGAGGGT
GGTAGTAGCACAAGGAGGAAGAGGATTGAGGAATGGAAGAGGAGGATAGC
CAAGAATGTGGCCGCCACCACTTCTCAAGCAGCGATTGATCAACTCAGAT
AACTGAAGACCGCAACCGAACACAATGGCCGGGACCACAGACACAGACAC
AGTCAGCTGGAGTGGACGCGTGTGATGTACAAGTCTTCAGTGCTGGGGCA
TTGTATGGCTCGTCGCCTGGCATGAAAGACAAAAAAGCAAGAAGCTGCAC
GATTCCACACCGTGAGAGTCACTGCTTTAAATTTTTTACACGACGTCACC
GGTGGCCTTCCCACACGCGCGCGCCTTTTTCTGGGATCCTTGCGCCCGTA
TTCCTATGTTTTTGTTTCACAGCTCGATTCATCACTTAAAGATCGTCTCA
TCCTCCTACCACTGCAAGAGTAAGGTTCGAAAATGCAGCATCGGTGCATC
CTCCGCCCTCCCACGGCATTCCAACGCATCAGGGCCTTCCTCAGCACCAG
CACCAGCCAATCAACACCCCCAACCCCACCGAAAAAGGTGCCGCGTCTGT
CCCCGCAAGCCGTGAAGGTAGCCTTGACCATGGACTTGCCTGGCTGGGCG
GATGTGAAGGGACGCGATGCCTTGGAAAAGACGTACCTCTTTAAAGACTT
CGGGGAGGTAAGAACAGGAGGGAGGGGTTCAAGATGGATTGTGGACGTTC
GAATGGAGTAAGAGGATTTGGTTTATACAGGAACCGATCTCTGACTTACT
CTGACACCCTCGCCATCCTTCCTTCTTCCTCCTTTCCTCCCTCACCTTCG
ATCCAGGCCTGGGGCTTCATGTCCCGCGCGGCCCTCTTGGCGGAAAAGCA
CGACCACCACCCGGAATGGTTCAACGTCTACAACAAAGTGCATGTGGTCT
TAACCACACATGATGCTGGGGGGGTCAGTCAGAAGGACGTTGCGATGGGT
AAAGCCATGGATGCTCTGGTAGTTGAGAAGCCGCGCTCGAGCTCCTAGAG
AGTTGAGTAGAGAGTAGTGCTAATGTGCATATGCAGAGTGAGGAGACAAT
AAACTTATTGTGAATAGAATCGAAGGCAAGCAGAAAAGAAGAAAAAAGAA
AAGAAGGAGGACAAACCCAGAAAAAAATAAGAAGCTGGAGAAGAAGGGTT
ATAGTGACTTATCTCACCACTTCACTACAGTGTAAGACGCAGTGCTTTGA
CTTGTTTTCTTTACCTGCTCCTTTCCCACTCCTGCCCCCCCCTCACCCTC
AACAACACGACCAATATACGTTCCGATACGGATAGCGACACACGTCCCTA
GACCTTTCCCCCCCCTCCTCCTCTTCCTCCTCTTTTTTCGCCCACACCGC
AGGCCGCCACTCCTTCCCCATCAAGCTCGACCATATCCCATCCCTCACAC
AACAGAAGGACACAACATTCATGCACAAGCCCTCACTGAATGGAAGGTCA
AATACATCACCGTCCCCTCCCTCTCCCCTTCCTCCTCCTCCTCCCTCCTC
CTCTCCTCCATGTCTTCGTAGATACACAATTCTCTCAGGCCCTTTGGTAA
ATTCGTAGGACGTGAGGGAGGAGACAGCAAGGAAGATGTGAAGGACGAGA
AGGAGGAAGGCTATGCCGTACAAGCACCAGAGGAGGAGGGAGAGGGAGAG
GGGGAGGAGGTTGGCAAGGACGTAGTCGACCAAGTCAGGGCTTCCTCTAG
GAGGGGAGGGAAGGGGGGAAAGAGAGAGAGGGGAGAAATGAGATGAATCG
GCTCCCATCGCGTCCATTAAGGGAGGTTCCCAACGTTT
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Coding sequence (CDS) from alignment at chr1:169558..171695-

>NO01G00660.1 ID=NO01G00660.1|Name=NO01G00660.1|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at chr1:169558..171695- (Nannochloropsis oceanica)
ATGCAGCATCGGTGCATCCTCCGCCCTCCCACGGCATTCCAACGCATCAG
GGCCTTCCTCAGCACCAGCACCAGCCAATCAACACCCCCAACCCCACCGA
AAAAGGTGCCGCGTCTGTCCCCGCAAGCCGTGAAGGTAGCCTTGACCATG
GACTTGCCTGGCTGGGCGGATGTGAAGGGACGCGATGCCTTGGAAAAGAC
GTACCTCTTTAAAGACTTCGGGGAGGCCTGGGGCTTCATGTCCCGCGCGG
CCCTCTTGGCGGAAAAGCACGACCACCACCCGGAATGGTTCAACGTCTAC
AACAAAGTGCATGTGGTCTTAACCACACATGATGCTGGGGGGGTCAGTCA
GAAGGACGTTGCGATGGGTAAAGCCATGGATGCTCTGGTAGTTGAGAAGC
CGCGCTCGAGCTCCTAG
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Synonyms
Publications