NO01G00630.1, NO01G00630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00630.1
Unique NameNO01G00630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1473
Alignment locationchr1:165088..166560 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:165088..166560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00630.1 vs.
Match: XP_005855963.1 (pyridoxamine phosphate [Nannochloropsis gaditana CCMP526]; EKU20406.1 pyridoxamine phosphate [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 256.5 bits (654), Expect = 9.600e-65
Identity = 144/213 (67.61%), Postives = 159/213 (74.65%), Query Frame = 0 
Query:   85 PVEGSEDIFPPLPPTVVALLHSTRVCHLSTTSSDGLPHLSLMRFTYRQEEEVIIMTTRTDTKKYELLCSSPKVAVLVHDFPSLRKEEEEEEEEVGGSKGGGEGGST--------------VQDVDDGAGEGHTYAITLNGVAHVQKGEEAERFRALHLVNNIAYRQFIEGEKIAVFTVHVMSARICNVKDRVTYWDKHTA-VKAAKEQEMKKE 283
            PVEG EDIFPPLPPTVVALL STRVCHLST S+DGLPHLSLMRFTYR+EEEVIIMTTRTDTKKYELLCS PKVAVL            E+   VGG++ GGEGGS                +  + G G+GHTYAITLNGVA ++ GEEAER+R+LHL NN+AY QFIEG  IAVFTVHVMSARICNVKDRVTYWDK TA V+    +E K E
Sbjct:    5 PVEGKEDIFPPLPPTVVALLQSTRVCHLSTASTDGLPHLSLMRFTYRREEEVIIMTTRTDTKKYELLCSMPKVAVL-----------GEKGGGVGGNEDGGEGGSKRPHRHEKEDGKGGGGKGKEGGDGDGHTYAITLNGVARMETGEEAERYRSLHLKNNVAYSQFIEGPGIAVFTVHVMSARICNVKDRVTYWDKRTATVEEGVRREEKGE 206
The following BLAST results are available for this feature:
BLAST of NO01G00630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855963.19.600e-6567.61pyridoxamine phosphate [Nannochloropsis gaditana C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00630NO01G00630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00630.1NO01G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00630.1.cds1NO01G00630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00630.1 ID=NO01G00630.1|Name=NO01G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp
GTACGTGGAGGCACAACTCCAATTCCCCTATGAAGCGGTGTGGAAGTAAA
GTTTGTGGCTACTTGAACCTACCATATTCCCTCCGTCCTCCCAGGTCCAC
TCGGTCCAAAAGAATGTTCTCGGAGTCGACGTGTAGCGCGGATACGTGCC
GTGGAATGCAAGCCCGACGGGGAGGTGGCCCCACCAAATGCAACGTATCT
GTCTTGCCTCCTTCTTTCCGCTCCAATCGCACACCATTACATCCACAATT
CACGCCCTCCACCCATAGCTGGCACAGGGAACACTGAAGCTGGAGCCTTG
AAGGTGCAAGGACACGCTTAGAAACGACCTAGCTTCGGATAGGACCTCAT
GCCAACCCCCAGAATGGTACGGGAACCCAGCGACGGCCGCTTGACCCATC
AAGGCGCCGCCTTTCTCTTTCTCATAACCACTACAATGGCTGCAGCAGGC
GGTGCAGCCCTTGTCCTCTTATTGCAGCACCGCGGCACTCTCCCTCCACC
TCCACGCCGACAAGCACCACGCTCGCCAAGCAAGGGCAAAGAAGTGCATG
CCGCCCACGTTGGCAGCCCTAGCAAAAGCAACAGCAATCGGGACACTATG
CCTGTGGAAGGGAGCGAGGATATCTTCCCTCCTTTGCCCCCCACCGTGGT
GGCTTTGCTTCACTCCACCCGTGTCTGTCACCTGAGTACTACCAGCTCGG
ATGGCTTACCGCATTTGTCCCTAATGCGGTTCACTTACCGACAGGAGGAG
GAAGTAATTATAATGACAACGCGGACCGACACCAAGAAGTATGAGCTGTT
GTGTTCGAGCCCCAAGGTTGCTGTCTTGGTACATGATTTCCCGTCGTTAC
GGAAGGAGGAGGAAGAGGAGGAAGAGGAGGTGGGAGGGAGTAAGGGAGGG
GGGGAGGGAGGGTCGACGGTCCAGGACGTAGATGACGGAGCAGGAGAAGG
GCACACATACGCGATAACTTTAAATGGCGTGGCACATGTGCAAAAGGGAG
AGGAGGCAGAGAGGTTTCGGGCGCTGCACTTGGTGAATAATATTGCTTAC
AGGCAGTTCATCGAGGGGGAAAAGATCGCTGTGTTTACGGTGCATGTGAT
GAGTGCACGAATATGCAATGTGAAAGACCGCGTGACGTACTGGGATAAGC
ATACGGCGGTCAAGGCAGCGAAGGAACAGGAGATGAAGAAGGAAGCCGAA
ACGGTGTGAGGGGAGGAGAGGGGAGAAAGAGACGGAAGTTGTAAAAGGTG
TAGAGAGAAGAGGAGAGGAAGAAAAGAAGGATTCCGAAAAGGTGTAGGAG
GGCGATGACCAGCATCAAACAATGCATGTGCGAAGAAATGGGTAAATTTT
TAAAAATAGGTCGGAGTCGGTGAGTTGTTACAAAAGCGACAAGAGAGCGA
AGCTAAGAGGGAAGGAAAAGGAATAATAACACGAAGAAAAAGAAGAGCAG
AATGACCTCAGAGGCCACTTACA
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protein sequence of NO01G00630.1

>NO01G00630.1-protein ID=NO01G00630.1-protein|Name=NO01G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MPTPRMVREPSDGRLTHQGAAFLFLITTTMAAAGGAALVLLLQHRGTLPP
PPRRQAPRSPSKGKEVHAAHVGSPSKSNSNRDTMPVEGSEDIFPPLPPTV
VALLHSTRVCHLSTTSSDGLPHLSLMRFTYRQEEEVIIMTTRTDTKKYEL
LCSSPKVAVLVHDFPSLRKEEEEEEEEVGGSKGGGEGGSTVQDVDDGAGE
GHTYAITLNGVAHVQKGEEAERFRALHLVNNIAYRQFIEGEKIAVFTVHV
MSARICNVKDRVTYWDKHTAVKAAKEQEMKKEAETV*
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mRNA from alignment at chr1:165088..166560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00630.1 ID=NO01G00630.1|Name=NO01G00630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp|location=Sequence derived from alignment at chr1:165088..166560- (Nannochloropsis oceanica)
GTACGTGGAGGCACAACTCCAATTCCCCTATGAAGCGGTGTGGAAGTAAA
GTTTGTGGCTACTTGAACCTACCATATTCCCTCCGTCCTCCCAGGTCCAC
TCGGTCCAAAAGAATGTTCTCGGAGTCGACGTGTAGCGCGGATACGTGCC
GTGGAATGCAAGCCCGACGGGGAGGTGGCCCCACCAAATGCAACGTATCT
GTCTTGCCTCCTTCTTTCCGCTCCAATCGCACACCATTACATCCACAATT
CACGCCCTCCACCCATAGCTGGCACAGGGAACACTGAAGCTGGAGCCTTG
AAGGTGCAAGGACACGCTTAGAAACGACCTAGCTTCGGATAGGACCTCAT
GCCAACCCCCAGAATGGTACGGGAACCCAGCGACGGCCGCTTGACCCATC
AAGGCGCCGCCTTTCTCTTTCTCATAACCACTACAATGGCTGCAGCAGGC
GGTGCAGCCCTTGTCCTCTTATTGCAGCACCGCGGCACTCTCCCTCCACC
TCCACGCCGACAAGCACCACGCTCGCCAAGCAAGGGCAAAGAAGTGCATG
CCGCCCACGTTGGCAGCCCTAGCAAAAGCAACAGCAATCGGGACACTATG
CCTGTGGAAGGGAGCGAGGATATCTTCCCTCCTTTGCCCCCCACCGTGGT
GGCTTTGCTTCACTCCACCCGTGTCTGTCACCTGAGTACTACCAGCTCGG
ATGGCTTACCGCATTTGTCCCTAATGCGGTTCACTTACCGACAGGAGGAG
GAAGTAATTATAATGACAACGCGGACCGACACCAAGAAGTATGAGCTGTT
GTGTTCGAGCCCCAAGGTTGCTGTCTTGGTACATGATTTCCCGTCGTTAC
GGAAGGAGGAGGAAGAGGAGGAAGAGGAGGTGGGAGGGAGTAAGGGAGGG
GGGGAGGGAGGGTCGACGGTCCAGGACGTAGATGACGGAGCAGGAGAAGG
GCACACATACGCGATAACTTTAAATGGCGTGGCACATGTGCAAAAGGGAG
AGGAGGCAGAGAGGTTTCGGGCGCTGCACTTGGTGAATAATATTGCTTAC
AGGCAGTTCATCGAGGGGGAAAAGATCGCTGTGTTTACGGTGCATGTGAT
GAGTGCACGAATATGCAATGTGAAAGACCGCGTGACGTACTGGGATAAGC
ATACGGCGGTCAAGGCAGCGAAGGAACAGGAGATGAAGAAGGAAGCCGAA
ACGGTGTGAGGGGAGGAGAGGGGAGAAAGAGACGGAAGTTGTAAAAGGTG
TAGAGAGAAGAGGAGAGGAAGAAAAGAAGGATTCCGAAAAGGTGTAGGAG
GGCGATGACCAGCATCAAACAATGCATGTGCGAAGAAATGGGTAAATTTT
TAAAAATAGGTCGGAGTCGGTGAGTTGTTACAAAAGCGACAAGAGAGCGA
AGCTAAGAGGGAAGGAAAAGGAATAATAACACGAAGAAAAAGAAGAGCAG
AATGACCTCAGAGGCCACTTACA
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Coding sequence (CDS) from alignment at chr1:165088..166560-

>NO01G00630.1 ID=NO01G00630.1|Name=NO01G00630.1|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at chr1:165088..166560- (Nannochloropsis oceanica)
ATGCCAACCCCCAGAATGGTACGGGAACCCAGCGACGGCCGCTTGACCCA
TCAAGGCGCCGCCTTTCTCTTTCTCATAACCACTACAATGGCTGCAGCAG
GCGGTGCAGCCCTTGTCCTCTTATTGCAGCACCGCGGCACTCTCCCTCCA
CCTCCACGCCGACAAGCACCACGCTCGCCAAGCAAGGGCAAAGAAGTGCA
TGCCGCCCACGTTGGCAGCCCTAGCAAAAGCAACAGCAATCGGGACACTA
TGCCTGTGGAAGGGAGCGAGGATATCTTCCCTCCTTTGCCCCCCACCGTG
GTGGCTTTGCTTCACTCCACCCGTGTCTGTCACCTGAGTACTACCAGCTC
GGATGGCTTACCGCATTTGTCCCTAATGCGGTTCACTTACCGACAGGAGG
AGGAAGTAATTATAATGACAACGCGGACCGACACCAAGAAGTATGAGCTG
TTGTGTTCGAGCCCCAAGGTTGCTGTCTTGGTACATGATTTCCCGTCGTT
ACGGAAGGAGGAGGAAGAGGAGGAAGAGGAGGTGGGAGGGAGTAAGGGAG
GGGGGGAGGGAGGGTCGACGGTCCAGGACGTAGATGACGGAGCAGGAGAA
GGGCACACATACGCGATAACTTTAAATGGCGTGGCACATGTGCAAAAGGG
AGAGGAGGCAGAGAGGTTTCGGGCGCTGCACTTGGTGAATAATATTGCTT
ACAGGCAGTTCATCGAGGGGGAAAAGATCGCTGTGTTTACGGTGCATGTG
ATGAGTGCACGAATATGCAATGTGAAAGACCGCGTGACGTACTGGGATAA
GCATACGGCGGTCAAGGCAGCGAAGGAACAGGAGATGAAGAAGGAAGCCG
AAACGGTGTGA
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Synonyms
Publications