NO01G00510.1, NO01G00510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00510.1
Unique NameNO01G00510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length576
Alignment locationchr1:134267..136225 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:134267..136225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00510.1 vs.
Match: EWM28982.1 (hypothetical protein Naga_100737g2 [Nannochloropsis gaditana])

HSP 1 Score: 332.4 bits (851), Expect = 9.200e-88
Identity = 169/191 (88.48%), Postives = 180/191 (94.24%), Query Frame = 0 
Query:    1 MDQLGDLDHEKLITAGLLLQGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAIGFVLGVSVMITFLSLMTAIFWGQLSNCSPGYYDVKRYSCTNPSAYGATCAFATLLFLIQLFFTSALVLWRDEFIQDASAYDDIHGGGSSSNSTSAGGGGLPGYEGGAQQASYNQSTTADL 192
            MDQLGDLDHEKLITAGL+ QGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLA+GFVLGVSVMITFLSLMTAIFWGQL+NCSPGYYD+KRYSCTN SAY ATCAFATLLFL+QL FTSALVLWRDEFIQD+SAYDDIHG G +S+S++A   GLPGYEGG QQ SYNQS+TADL
Sbjct:    1 MDQLGDLDHEKLITAGLVTQGVFVLCYTICSFVVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKMPLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYYDIKRYSCTNRSAYSATCAFATLLFLVQLVFTSALVLWRDEFIQDSSAYDDIHGAGGASSSSAA---GLPGYEGGTQQPSYNQSSTADL 188
The following BLAST results are available for this feature:
BLAST of NO01G00510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28982.19.200e-8888.48hypothetical protein Naga_100737g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00510NO01G00510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00510.1NO01G00510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00510.1.cds1NO01G00510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00510.1.cds2NO01G00510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00510.1.cds3NO01G00510.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00510.1.cds4NO01G00510.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00510.1.cds5NO01G00510.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00510.1.cds6NO01G00510.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00510.1.cds7NO01G00510.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00510.1.cds8NO01G00510.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00510.1 ID=NO01G00510.1|Name=NO01G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=576bp
ATGGACCAGCTAGGGGACTTGGACCATGAGAAGCTCATCACGGCGGGCTT
GCTTTTGCAAGGGGTCTTCGTCCTATGTTATACCATTTGCTCCTTCGTCG
TCGCATCAACCGCCAACATGGGTTTCAATGCAGTGCTGACGGCGTTGCTT
TACATTTTCTATGTGGCGGGGACGTACCATGTGCTGCAGCGATCAAAGAT
GCCATTGGCGATTGGATTTGTGCTGGGTGTGTCGGTGATGATCACCTTCC
TCTCTCTCATGACGGCCATCTTCTGGGGGCAGCTGTCCAACTGCTCTCCG
GGCTACTACGACGTGAAGCGATACTCTTGCACGAACCCGAGTGCGTACGG
AGCCACATGCGCCTTTGCCACGCTCCTCTTCCTCATCCAGCTGTTCTTCA
CGTCCGCCCTGGTGTTATGGCGAGATGAGTTCATCCAGGACGCCAGCGCC
TACGACGACATCCACGGTGGCGGGAGCAGTAGCAACAGTACCAGTGCAGG
CGGCGGGGGCTTGCCGGGGTATGAAGGGGGGGCACAGCAAGCATCTTATA
ATCAGTCGACTACCGCTGATCTATAA
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protein sequence of NO01G00510.1

>NO01G00510.1-protein ID=NO01G00510.1-protein|Name=NO01G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MDQLGDLDHEKLITAGLLLQGVFVLCYTICSFVVASTANMGFNAVLTALL
YIFYVAGTYHVLQRSKMPLAIGFVLGVSVMITFLSLMTAIFWGQLSNCSP
GYYDVKRYSCTNPSAYGATCAFATLLFLIQLFFTSALVLWRDEFIQDASA
YDDIHGGGSSSNSTSAGGGGLPGYEGGAQQASYNQSTTADL*
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mRNA from alignment at chr1:134267..136225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00510.1 ID=NO01G00510.1|Name=NO01G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1959bp|location=Sequence derived from alignment at chr1:134267..136225- (Nannochloropsis oceanica)
ATGGACCAGCTAGGGGACTTGGACCATGAGAAGCTCATCACGGCGGGCTT
GCTTTTGCAAGGGGTAAGGAGGGAGGGCGGAACGGAGGATGAGAATGGAA
AAAAATAAGAGTCGGGGAAAGGATAGGGGAGGACATAAGATGCTAGTAGA
AGACAAGGGCAACTTGGAGGTCACCGTTCATACGCCTGCCGTGGAGGCTG
AGGAGTCTCTGCCGTGGGTGACCAAGCCCCGCCGTCGCCTCGATGCTTTG
TCGGACCGAGAGAGGACATTTCCCACCGTTGGATCTAAGCGCCCATGCAC
TCACTTTTCGGGACGTCTTTCTCCGCCGCTTGAAAACATCAAAATCAGTA
ACATTGTTGTTATACACACACAAATATATGTACAGGTCTTCGTCCTATGT
TATACCATTTGCTCCTTCGTCGTCGCATCAACCGCCAGTACGTAGCCCCT
GCTCTTTCGCCCCCTCCCTCTCTCCCTCCCTCCCACCGTCCCCCCTCCCT
CTTTACTTGTTCTCCAAACACACGGAGGGTGCTAACATCCAAAAGAAAAA
GGCTTGCGTTGCATTTCTGTGTGGGCGGGGTTGTATTCACTCTCTCTCCC
TCCCTCTTTCCCTCCCTCCTCCTCAGACATGGGTTTCAATGCAGTGCTGA
CGGCGTTGCTTTACATTTTCTATGTGGCGGGGACGTACCATGTGCTGCAG
CGATCAAAGATGCCATTGGCGGTGAGGAAGGGGAGGAACGGGGGGAGGGA
GAGACGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGATGGAAGGGGAG
CAGCCTGCAGTCATGAGCACGGATGCATCCGTTCGTCGGCTGGTTTATTT
GTTTATTTACGTATTTACATTCTTCTCTAATCCTTCACAGATTGGATTTG
TGCTGGGTGTGTCGGTGATGATCACCTTCCTCTCTCTCATGACGGCCATC
TTCTGGGTAGGTGCCGAGGGAGGGAGGGAGGGAAGGCGGGAGGGAGGGAG
GGAGGGTTCACAGAGTCGTCAGGCTTAGAGGATGACATTTCTTCTTCCTT
TTTTTTCTTATTCAAACTTCAAAATCTTTTCTCTATTCCTCTTCGTCGTA
AAATTAATTTTAATCTCATTCATATTTTTAATCTTTTTTTAAACATATCT
CTTCCTCTTCTACTTCCTCCCCCTCTCCTCCTCCTCCACCTCCTCCTCCA
TCCCTCCCTCGCCACAGGGGCAGCTGTCCAACTGCTCTCCGGGCTACTAC
GACGTGAAGCGATACTCTTGCACGGTAAGGGAAGAGGGAGGGGGGGAGTG
AGGGAGGGAGGGAGTGAATGAGGAAGGGAGGGAAGGAGGGCAACATGGAT
ATGGCGCCTTGGTAGTTCTTTTGACGCTCACCCTTCCTTTTCTTTTCCTT
CCGCCCTCCCTCCCTCCCTCCCTCCTTTTTTCTCTTTCTTTCAACGCACA
GAACCCGAGTGCGTACGGAGCCACATGCGCCTTTGCCACGCTCCTCTTCC
TCATCCAGGTACACTATGGCCCCCTCCCCTTCCCTCCCTCTCTCCCTTCC
TTCCTCCCTTCCTTCCCTCCTTCTCTTTTCTGCGATAAATCGCCAACGTG
GGCCTCGTCCTTCTCCTTCTCTCTCTCCCTCCCTCCCTCCCTCCCCCGCA
GCTGTTCTTCACGTCCGCCCTGGTGTTATGGCGAGATGAGTTCATCCAGG
ACGCCAGCGCCTACGACGACATCCACGGTGCGCTCCTCCCCTCCCTCCCC
TCCCCTCTCCCCTTTATCCATCTATCCACTGTCGGTTGCACCTACTCCCG
CCCACCTTTTTTTCACTCCTCCCTCCCTCCCTCCCTTCCTTCCTCCCAGG
TGGCGGGAGCAGTAGCAACAGTACCAGTGCAGGCGGCGGGGGCTTGCCGG
GGTATGAAGGGGGGGCACAGCAAGCATCTTATAATCAGTCGACTACCGCT
GATCTATAA
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Coding sequence (CDS) from alignment at chr1:134267..136225-

>NO01G00510.1 ID=NO01G00510.1|Name=NO01G00510.1|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at chr1:134267..136225- (Nannochloropsis oceanica)
ATGGACCAGCTAGGGGACTTGGACCATGAGAAGCTCATCACGGCGGGCTT
GCTTTTGCAAGGGGTCTTCGTCCTATGTTATACCATTTGCTCCTTCGTCG
TCGCATCAACCGCCAACATGGGTTTCAATGCAGTGCTGACGGCGTTGCTT
TACATTTTCTATGTGGCGGGGACGTACCATGTGCTGCAGCGATCAAAGAT
GCCATTGGCGATTGGATTTGTGCTGGGTGTGTCGGTGATGATCACCTTCC
TCTCTCTCATGACGGCCATCTTCTGGGGGCAGCTGTCCAACTGCTCTCCG
GGCTACTACGACGTGAAGCGATACTCTTGCACGAACCCGAGTGCGTACGG
AGCCACATGCGCCTTTGCCACGCTCCTCTTCCTCATCCAGCTGTTCTTCA
CGTCCGCCCTGGTGTTATGGCGAGATGAGTTCATCCAGGACGCCAGCGCC
TACGACGACATCCACGGTGGCGGGAGCAGTAGCAACAGTACCAGTGCAGG
CGGCGGGGGCTTGCCGGGGTATGAAGGGGGGGCACAGCAAGCATCTTATA
ATCAGTCGACTACCGCTGATCTATAA
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Synonyms
Publications