NO01G00420.1, NO01G00420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00420.1
Unique NameNO01G00420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1125
Alignment locationchr1:112259..114367 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:112259..114367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00420.1 vs.
Match: EWM28968.1 (peptide methionine sulfoxide reductase [Nannochloropsis gaditana]; EWM28969.1 peptide methionine sulfoxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 426.8 bits (1096), Expect = 7.000e-116
Identity = 222/334 (66.47%), Postives = 262/334 (78.44%), Query Frame = 0 
Query:   16 AVLLLLFPS-ALAFLRIPSSTPTSSTACRSFSLSNKALGAAVARAGNVLTVDLSITLEDGTDMPADFDMGKNVRFRLGHGGLPPFMHSAVDGMVEKESKTVVVPPDEAYGAYYPELAAEIPAENAPRGLKVGDKVKLTNGLTARVTAQDTGKNTFTIDGNHPCGGRSLTLATTLQLVESAESQCFATAHLAAGCFWGLELAMQRLPGVVATAAGYTQGGKRGGREGGMEGGRAPTYSEVCSGKTGFVEAVEVLFDQRVISYHRILEVFWKRHDPTQADGQGNDIGTQYRGGIYYTSEEQRKVAEESKARVEASGEYDEPIVTEISPADTFFKAE 349
            AV ++L P+   AF R     P++    RSFSL+ + L  A A  G+V T+DLSI LEDGT MPADFD G  VRFRLG GGLPP++H+AV+GM  +E +T +VPPDEAYG YYPELAA+IPAEN P G+KVGDKVKLTNGLTARVT  D  +  F++DGNHP  GR+L+L+  L  +  A+S CFAT HLAAGCFWGLELA QRLPGVVATAAGYTQ    GG EG  E  RAPTYSEVCSG+TG+VEAVEVLFD+ V+S+ +ILEVFW RHDPTQ +GQGND+GTQYRGGIYYTS+ Q++ AEESKAR+EASG YD+PIVTEI PAD F+ AE
Sbjct:   14 AVAIILLPTYGFAFFRNGPFVPSTP---RSFSLATR-LSTAKATPGDVATIDLSIMLEDGTAMPADFDTGSQVRFRLGRGGLPPYVHAAVEGMHVQERRTRLVPPDEAYGPYYPELAADIPAENTPPGMKVGDKVKLTNGLTARVTRHDPAQGLFSLDGNHPFAGRTLSLSLLLHDLMPADSPCFATVHLAAGCFWGLELAFQRLPGVVATAAGYTQ----GGNEGEGEERRAPTYSEVCSGRTGYVEAVEVLFDEGVVSFEKILEVFWNRHDPTQLNGQGNDLGTQYRGGIYYTSDAQKRAAEESKARLEASGLYDKPIVTEILPADIFYTAE 339
The following BLAST results are available for this feature:
BLAST of NO01G00420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28968.17.000e-11666.47peptide methionine sulfoxide reductase [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00420NO01G00420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00420.1NO01G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00420.1.cds1NO01G00420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00420.1.cds2NO01G00420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00420.1.cds3NO01G00420.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00420.1.cds4NO01G00420.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00420.1.cds5NO01G00420.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00420.1.cds6NO01G00420.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00420.1.cds7NO01G00420.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00420.1 ID=NO01G00420.1|Name=NO01G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
ATGCCTCCATCCACCCCCCAACACCTCCTACTTCTGACCCAGGCCGCTGT
TCTTCTCCTACTCTTTCCCTCGGCCTTAGCCTTTCTTCGTATCCCTTCCT
CCACCCCTACCTCGTCCACCGCATGCCGCTCCTTTTCTTTGTCTAATAAA
GCCCTAGGTGCCGCCGTTGCCCGTGCAGGCAACGTGTTGACGGTCGACCT
TTCCATCACTTTGGAGGATGGAACCGACATGCCTGCTGACTTTGACATGG
GAAAGAACGTCCGTTTCCGGCTGGGCCACGGCGGACTCCCCCCCTTTATG
CACTCGGCCGTGGACGGCATGGTGGAGAAGGAGAGCAAAACGGTTGTAGT
GCCACCTGACGAGGCTTATGGAGCTTATTACCCCGAGCTGGCTGCTGAGA
TTCCGGCTGAAAATGCGCCCAGAGGGTTAAAAGTGGGGGATAAGGTCAAA
CTCACCAATGGCCTCACCGCGCGGGTCACAGCCCAAGACACGGGGAAGAA
CACGTTCACCATCGACGGTAACCACCCTTGCGGTGGGCGCTCCCTGACTC
TCGCTACTACCCTCCAACTTGTCGAGTCGGCCGAGAGCCAGTGTTTTGCA
ACGGCCCATTTGGCTGCCGGTTGCTTCTGGGGGCTAGAGCTGGCCATGCA
ACGTCTTCCGGGTGTGGTGGCGACGGCGGCAGGGTACACGCAAGGAGGGA
AGAGGGGGGGTAGGGAGGGAGGGATGGAAGGAGGGAGGGCACCGACTTAC
AGTGAAGTGTGCTCTGGAAAAACGGGCTTTGTGGAGGCAGTGGAGGTGCT
ATTCGATCAGAGGGTGATCTCCTACCACAGAATTTTGGAGGTGTTTTGGA
AACGGCATGATCCCACCCAGGCGGATGGCCAGGGGAATGACATTGGCACC
CAGTACAGGGGCGGCATCTACTACACTTCGGAGGAGCAGAGGAAGGTGGC
GGAGGAGAGCAAGGCTCGAGTGGAGGCATCTGGAGAGTATGATGAGCCCA
TCGTTACAGAAATCTCGCCAGCTGACACTTTCTTCAAGGCCGAGGAGTAT
CATCTGCAGTACTTGATGAAAAACGGCCAGTCCGCGCGAAAAAACGACCC
GACCCCCGTCCGTTGCTACGGTTAG
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protein sequence of NO01G00420.1

>NO01G00420.1-protein ID=NO01G00420.1-protein|Name=NO01G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MPPSTPQHLLLLTQAAVLLLLFPSALAFLRIPSSTPTSSTACRSFSLSNK
ALGAAVARAGNVLTVDLSITLEDGTDMPADFDMGKNVRFRLGHGGLPPFM
HSAVDGMVEKESKTVVVPPDEAYGAYYPELAAEIPAENAPRGLKVGDKVK
LTNGLTARVTAQDTGKNTFTIDGNHPCGGRSLTLATTLQLVESAESQCFA
TAHLAAGCFWGLELAMQRLPGVVATAAGYTQGGKRGGREGGMEGGRAPTY
SEVCSGKTGFVEAVEVLFDQRVISYHRILEVFWKRHDPTQADGQGNDIGT
QYRGGIYYTSEEQRKVAEESKARVEASGEYDEPIVTEISPADTFFKAEEY
HLQYLMKNGQSARKNDPTPVRCYG*
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mRNA from alignment at chr1:112259..114367+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00420.1 ID=NO01G00420.1|Name=NO01G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2109bp|location=Sequence derived from alignment at chr1:112259..114367+ (Nannochloropsis oceanica)
ATGCCTCCATCCACCCCCCAACACCTCCTACTTCTGACCCAGGCCGCTGT
TCTTCTCCTACTCTTTCCCTCGGCCTTAGCCTTTCTTCGTATCCCTTCCT
CCACCCCTACCTCGTCCACCGCATGCCGCTCCTTTTCTTTGTCTAATAAA
GCCCTAGGTGCCGCCGTTGCCCGTGCAGGCAACGTGTTGACGGTCGACCT
TTCCATCACTTTGGAGGATGGAACCGACATGCCTGCTGACTTTGACATGG
GAAAGAACGTCCGTTTCCGGCTGGGCCACGGCGGACTCCCCCCCTTTATG
CACTCGGCCGTGGACGGCATGGTGGAGAAGGAGAGCAAAACGGTTGTAGT
GCCACCTGACGAGGCTTATGGAGCTTATTACCCCGAGCTGGCTGCTGAGA
TTCCGGCTGAAAATGCGCCCAGAGGGTTAAAAGTGGGGGATAAGGTACGC
AGGAGGGAAGACCAAGGTGAAAAGGAAGAGGTGTGGGAGCCATGCTCGTA
AACTCTCACCCTCCACCCACCATGGCCAGGTCAAACTCACCAATGGCCTC
ACCGCGCGGGTCACAGCCCAAGACACGGGGAAGAACACGTTCACCATCGA
CGGTAACCACCCTTGCGGTGGGCGCTCCCTGACTCTCGCTACTACCCTCC
AACTTGTCGAGTCGGCCGAGAGCCAGTGTTTTGCAACGGCCCATTTGGCT
GCCGGTTGCTTCTGGGGGCTAGAGCTGGCCATGCAACGTCTTCCGGGTGT
GGTGGCGACGGCGGCAGGGTACACGCAAGGAGGGAAGAGGGGGGGTAGGG
AGGGAGGGATGGAAGGAGGGAGGGCACCGACTTACAGTGAAGTGTGCTCT
GGAAAAACGGGCTTTGTGGAGGCAGTGGAGGTGCTATTCGATCAGAGGGT
GATCTCCTACCACAGAATTTTGGAGGTGAGGGAGGAAAGGAGGAAGGGAA
GAAGGGATGGGAAAGGGAGAGAGAGAGGACGGGAGGGAGGGTGAAGTGGT
GGGATACATTGTTTGGTTTCGTGGACACAATCCAGTCACCGGCCCATGTC
GTCTCCTACCTGCCCCTTCTTCCTCTTCTCTTTTCCTGCGTTTTAATCGT
CGTTGGTCACAGGTGTTTTGGAAACGGCATGATCCCACCCAGGCGGATGG
CCAGGGGAATGACATTGGTAAGGGAGGACTAGAAAAAAAGAGGGAGGGAG
GGAGGGAGGGAGGGGGGGAAGCAAGAGCTTCCCTTTAGCCTTGCCTTTCC
TATTAGCTGCATATTCCCTTTTCCTTCACATTCCTTCGTCCCCTTCCTCT
TTCCTCCCCGACCACAGGCACCCAGTACAGGGGCGGCATCTACTACACTT
CGGAGGAGCAGAGGAAGGTGGCGGAGGAGAGCAAGGCTCGGTAAGGGAGT
TAAGATGGGAGGGGAGAGGGAGGAGGGAGGGAGGGAAGGGGAGGGGAGGA
CTTGTAGCGTCTCTCATATATAAATGATGCATAAATATAACCACACAGAG
TGGAGGCATCTGGAGAGTATGATGAGCCCATCGTTACAGAAATCTCGCCA
GCTGACACTTTCTTCAAGGCCGAGGTAAGGGGAAATGAGGAAGGGAAGGA
GGGAAGGAGGGAAGGAGGGAGGAAATTAGGACCGTGAGTTTGGCTGGAAG
ACGGCATGCATTTCCAATTCTAACACTTCCATAACCCTCCCCCCTCCCCC
CCTCCCTTGTGCCCCCTGCTTTACACACACGTACACCCACCGTCTTGTCG
TCATTCCCCGCTGCTCGCTTCAGGAGTATCATCTGCAGTAAGTTTATGCG
CCCTGCACCGTCTTTCTCTCATCTCCTAACCCCCTGTCTTTTCCCTCCTC
TTCTTCCCCCCTTCCATTGCTTCCTCACTTTCCATGGCCGAGTATTATAT
ATATATATTGTGATAAATATGTGTGAAAAATAATTGATTGTGATAAAAAG
ATAGAAAATAACTGAAGAAGGAAAATAAACTAACGAAAAAACAAGTTAAG
TAAAAGCTCACATGCCCCGCACACGCATAAACCCCTCGCAAGGTACTTGA
TGAAAAACGGCCAGTCCGCGCGAAAAAACGACCCGACCCCCGTCCGTTGC
TACGGTTAG
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Coding sequence (CDS) from alignment at chr1:112259..114367+

>NO01G00420.1 ID=NO01G00420.1|Name=NO01G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr1:112259..114367+ (Nannochloropsis oceanica)
ATGCCTCCATCCACCCCCCAACACCTCCTACTTCTGACCCAGGCCGCTGT
TCTTCTCCTACTCTTTCCCTCGGCCTTAGCCTTTCTTCGTATCCCTTCCT
CCACCCCTACCTCGTCCACCGCATGCCGCTCCTTTTCTTTGTCTAATAAA
GCCCTAGGTGCCGCCGTTGCCCGTGCAGGCAACGTGTTGACGGTCGACCT
TTCCATCACTTTGGAGGATGGAACCGACATGCCTGCTGACTTTGACATGG
GAAAGAACGTCCGTTTCCGGCTGGGCCACGGCGGACTCCCCCCCTTTATG
CACTCGGCCGTGGACGGCATGGTGGAGAAGGAGAGCAAAACGGTTGTAGT
GCCACCTGACGAGGCTTATGGAGCTTATTACCCCGAGCTGGCTGCTGAGA
TTCCGGCTGAAAATGCGCCCAGAGGGTTAAAAGTGGGGGATAAGGTCAAA
CTCACCAATGGCCTCACCGCGCGGGTCACAGCCCAAGACACGGGGAAGAA
CACGTTCACCATCGACGGTAACCACCCTTGCGGTGGGCGCTCCCTGACTC
TCGCTACTACCCTCCAACTTGTCGAGTCGGCCGAGAGCCAGTGTTTTGCA
ACGGCCCATTTGGCTGCCGGTTGCTTCTGGGGGCTAGAGCTGGCCATGCA
ACGTCTTCCGGGTGTGGTGGCGACGGCGGCAGGGTACACGCAAGGAGGGA
AGAGGGGGGGTAGGGAGGGAGGGATGGAAGGAGGGAGGGCACCGACTTAC
AGTGAAGTGTGCTCTGGAAAAACGGGCTTTGTGGAGGCAGTGGAGGTGCT
ATTCGATCAGAGGGTGATCTCCTACCACAGAATTTTGGAGGTGTTTTGGA
AACGGCATGATCCCACCCAGGCGGATGGCCAGGGGAATGACATTGGCACC
CAGTACAGGGGCGGCATCTACTACACTTCGGAGGAGCAGAGGAAGGTGGC
GGAGGAGAGCAAGGCTCGAGTGGAGGCATCTGGAGAGTATGATGAGCCCA
TCGTTACAGAAATCTCGCCAGCTGACACTTTCTTCAAGGCCGAGGAGTAT
CATCTGCAGTACTTGATGAAAAACGGCCAGTCCGCGCGAAAAAACGACCC
GACCCCCGTCCGTTGCTACGGTTAG
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Synonyms
Publications