NO01G00250.1, NO01G00250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00250.1
Unique NameNO01G00250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length792
Alignment locationchr1:42953..43744 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:42953..43744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00250.1 vs.
Match: EWM28942.1 (hypothetical protein Naga_100347g3 [Nannochloropsis gaditana])

HSP 1 Score: 225.3 bits (573), Expect = 1.900e-55
Identity = 135/210 (64.29%), Postives = 158/210 (75.24%), Query Frame = 0 
Query:   24 PVRQQRMRLSMSSFPSSSCA-------LASRRAALSGKVTAAAASFFLLSNPTPALAGVKPSTAEESIKAAREIKAGLKSLAEMQVAASKADWETVKTLLSRPEFKNFDSTATTLVRSDLLTAEDKTSLGTIRRFGLTADYIIMIGGLETELRVGGVLPPLKDAIEDLEDEEGNGKSVNRGEAVKFVKLARGSLQEIDRISSSVLPEGEQ 227
            P ++    + MSS  SS  A       ++SRR +L    T A+A  FL     P  A VK S+ EE+ KAAREIK  L+S+A+MQ AASKA+WETVK LL R EFKNF++TATTLVRSDLLTAEDKTSLGTIRRFGLTAD+II +GGLE+ELR GGVLPPLK AI + ED+EG  K VNR EA+KFVKLARG+LQEIDRI+SSVLPE EQ
Sbjct:   32 PSKRVSALVFMSSSTSSDIAPSAAARGISSRRDSLVRVATTASALVFLSPFRHPVSAAVKASSTEEAQKAAREIKVALRSMADMQDAASKAEWETVKDLLERLEFKNFENTATTLVRSDLLTAEDKTSLGTIRRFGLTADFIITLGGLESELRAGGVLPPLKGAIVE-EDDEGGEKGVNRREALKFVKLARGALQEIDRITSSVLPEAEQ 240
The following BLAST results are available for this feature:
BLAST of NO01G00250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28942.11.900e-5564.29hypothetical protein Naga_100347g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00250NO01G00250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00250.1NO01G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00250.1.cds1NO01G00250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00250.1 ID=NO01G00250.1|Name=NO01G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=792bp
AACACAGCCAGACAATTGATCCACGGGCCCCGACACCCTCCGAAAGCAAA
GCAAAATGAAGACCCCCAGCGTCTTGACTATCGTGTTAGTACTGCCCATG
CTCGCCGCGGCATTCCTCGTCCGCCCTGTCCGACAGCAACGTATGCGCCT
CTCCATGTCTTCTTTCCCTTCCTCTTCATGTGCCCTTGCCTCCCGTCGCG
CCGCCCTCTCTGGCAAGGTCACGGCCGCCGCCGCTTCCTTCTTCCTCCTG
TCCAATCCCACCCCTGCGTTGGCAGGCGTCAAACCCTCGACAGCGGAAGA
GTCAATCAAAGCAGCCCGGGAAATCAAAGCTGGCTTGAAGAGCCTGGCCG
AGATGCAAGTCGCCGCCAGCAAGGCGGACTGGGAGACTGTCAAAACGCTC
CTGAGTAGGCCGGAGTTCAAGAACTTTGATAGCACGGCCACCACCTTGGT
GCGCTCGGATCTGTTGACGGCCGAGGATAAGACGAGCCTGGGAACTATCC
GTCGCTTCGGATTGACAGCTGACTACATCATCATGATTGGTGGCCTCGAG
ACGGAGTTACGAGTCGGGGGCGTCCTTCCCCCGTTGAAGGACGCGATAGA
GGATTTGGAGGACGAGGAGGGAAACGGAAAAAGTGTAAACAGGGGAGAGG
CGGTAAAGTTTGTCAAGCTAGCAAGGGGATCTTTGCAAGAAATCGACCGT
ATCTCCAGCTCGGTACTGCCCGAGGGAGAGCAATGAGGAGATAAAAAGTG
TGAAAAAGATGAAAAACATACAAGCAAGAAGATTGACTGGTA
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protein sequence of NO01G00250.1

>NO01G00250.1-protein ID=NO01G00250.1-protein|Name=NO01G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MKTPSVLTIVLVLPMLAAAFLVRPVRQQRMRLSMSSFPSSSCALASRRAA
LSGKVTAAAASFFLLSNPTPALAGVKPSTAEESIKAAREIKAGLKSLAEM
QVAASKADWETVKTLLSRPEFKNFDSTATTLVRSDLLTAEDKTSLGTIRR
FGLTADYIIMIGGLETELRVGGVLPPLKDAIEDLEDEEGNGKSVNRGEAV
KFVKLARGSLQEIDRISSSVLPEGEQ*
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mRNA from alignment at chr1:42953..43744-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00250.1 ID=NO01G00250.1|Name=NO01G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=792bp|location=Sequence derived from alignment at chr1:42953..43744- (Nannochloropsis oceanica)
AACACAGCCAGACAATTGATCCACGGGCCCCGACACCCTCCGAAAGCAAA
GCAAAATGAAGACCCCCAGCGTCTTGACTATCGTGTTAGTACTGCCCATG
CTCGCCGCGGCATTCCTCGTCCGCCCTGTCCGACAGCAACGTATGCGCCT
CTCCATGTCTTCTTTCCCTTCCTCTTCATGTGCCCTTGCCTCCCGTCGCG
CCGCCCTCTCTGGCAAGGTCACGGCCGCCGCCGCTTCCTTCTTCCTCCTG
TCCAATCCCACCCCTGCGTTGGCAGGCGTCAAACCCTCGACAGCGGAAGA
GTCAATCAAAGCAGCCCGGGAAATCAAAGCTGGCTTGAAGAGCCTGGCCG
AGATGCAAGTCGCCGCCAGCAAGGCGGACTGGGAGACTGTCAAAACGCTC
CTGAGTAGGCCGGAGTTCAAGAACTTTGATAGCACGGCCACCACCTTGGT
GCGCTCGGATCTGTTGACGGCCGAGGATAAGACGAGCCTGGGAACTATCC
GTCGCTTCGGATTGACAGCTGACTACATCATCATGATTGGTGGCCTCGAG
ACGGAGTTACGAGTCGGGGGCGTCCTTCCCCCGTTGAAGGACGCGATAGA
GGATTTGGAGGACGAGGAGGGAAACGGAAAAAGTGTAAACAGGGGAGAGG
CGGTAAAGTTTGTCAAGCTAGCAAGGGGATCTTTGCAAGAAATCGACCGT
ATCTCCAGCTCGGTACTGCCCGAGGGAGAGCAATGAGGAGATAAAAAGTG
TGAAAAAGATGAAAAACATACAAGCAAGAAGATTGACTGGTA
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Coding sequence (CDS) from alignment at chr1:42953..43744-

>NO01G00250.1 ID=NO01G00250.1|Name=NO01G00250.1|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at chr1:42953..43744- (Nannochloropsis oceanica)
ATGAAGACCCCCAGCGTCTTGACTATCGTGTTAGTACTGCCCATGCTCGC
CGCGGCATTCCTCGTCCGCCCTGTCCGACAGCAACGTATGCGCCTCTCCA
TGTCTTCTTTCCCTTCCTCTTCATGTGCCCTTGCCTCCCGTCGCGCCGCC
CTCTCTGGCAAGGTCACGGCCGCCGCCGCTTCCTTCTTCCTCCTGTCCAA
TCCCACCCCTGCGTTGGCAGGCGTCAAACCCTCGACAGCGGAAGAGTCAA
TCAAAGCAGCCCGGGAAATCAAAGCTGGCTTGAAGAGCCTGGCCGAGATG
CAAGTCGCCGCCAGCAAGGCGGACTGGGAGACTGTCAAAACGCTCCTGAG
TAGGCCGGAGTTCAAGAACTTTGATAGCACGGCCACCACCTTGGTGCGCT
CGGATCTGTTGACGGCCGAGGATAAGACGAGCCTGGGAACTATCCGTCGC
TTCGGATTGACAGCTGACTACATCATCATGATTGGTGGCCTCGAGACGGA
GTTACGAGTCGGGGGCGTCCTTCCCCCGTTGAAGGACGCGATAGAGGATT
TGGAGGACGAGGAGGGAAACGGAAAAAGTGTAAACAGGGGAGAGGCGGTA
AAGTTTGTCAAGCTAGCAAGGGGATCTTTGCAAGAAATCGACCGTATCTC
CAGCTCGGTACTGCCCGAGGGAGAGCAATGA
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Synonyms
Publications