NO01G00190.1, NO01G00190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00190.1
Unique NameNO01G00190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2175
Alignment locationchr1:30531..32705 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:30531..32705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00190.1 vs.
Match: EWM28940.1 (hypothetical protein Naga_100347g1 [Nannochloropsis gaditana])

HSP 1 Score: 167.5 bits (423), Expect = 1.000e-37
Identity = 162/483 (33.54%), Postives = 223/483 (46.17%), Query Frame = 0 
Query:   43 SSGSSGSCDGSSPPRRSSLGSTSSKQEAREREGKEKGRGQANSLLGVQGRLTGELIKPPDAHRESLFAPFYASDAAGPPAKKPPSYLASADGGAKEETWWMKDGGGSGGDEEGNMDESLTARLRRHTREVANLKTKEERKVPQRESNGGDGVDRGRRGGVDEIQDEGREKGGRGEQNDKGERDTGLRRAEQGAAMPLL--------VQHRQQEPVTHSHPEPS-----PSTLSLAPSLSIPSSNLPKYTITVVPWQRASSISYPSSTRHASSGCLGLFRCTSTWSHAFPSTSFPP--SSFITYKITLTLGDSFSFPLTSCFSSSPSFVTPPSSSPTFVQPSSAIPVPRTHTTIKRYSELLRYHRLWCEQRLVPRSLKAKFPPKTLLPPTMTMGTVR-------------TVGPVGRMDGDGEAGEASSSTLKRAYKLQLYFQALLDLKEEGTEE--GRMQG------GNLVESPLFWAMFAAS 490
            SS  + SC  S+    + +   + +   R+ +G EKG  +  S L V GRLT EL+K PD   E LFAP +ASD+ GPPAKKPPSYL ++  G   ETWWMK  G +    E   +ESLT RLR+  +E+   K + E KV +    G                 +G   GG      KG+  +G  +A  G+++P +        V+ R   P  H           P  +S   +L+ P   LP++ ++VVP     S S   +      GC G F C+      +      P  +  +TY+ITL L    S    S    +P+    PSS+           +  TH  +KRYSELL  H LWCEQ LVP + K KFPPK  +   M  G+VR             T G    + G   A   S +   RA  LQ YF+ALL+L +EG  E  G  +G      G +V+SPLFW +F +S
Sbjct:   79 SSPLTESCIESNDSLFADVSPQAQRGGGRKVKGGEKG--EEESCLPVSGRLTSELVKAPDPQHECLFAPQWASDSTGPPAKKPPSYLPASSPGTVRETWWMK--GPASDSTEAEAEESLTRRLRQRKQEMMK-KQESEGKVTEGSPLG-----------------DGELSGG------KGKLGSGQGKAAAGSSLPQVGALCNSQSVEERGSGPERHEQRGQGQMIRPPRIVSPLATLAEPRHRLPEHAVSVVPHAPPPSSSRVVARAGGPFGCHGFFHCSGRPILGYDKLCISPWKAQAVTYEITLKLPKKVS----SSTLEAPARPLLPSSASPLALSRVTSAMTSTHVAVKRYSELLSLHHLWCEQGLVPPAAKKKFPPKRRI-MFMGAGSVRHRRLNSRDAGAWKTTGE-DSLRGTPAAQPISRACQDRARALQDYFEALLELTKEGDMECKGGWEGRRAVKVGKVVKSPLFWMLFGSS 527
The following BLAST results are available for this feature:
BLAST of NO01G00190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28940.11.000e-3733.54hypothetical protein Naga_100347g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00190NO01G00190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00190.1NO01G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00190.1.cds1NO01G00190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00190.1 ID=NO01G00190.1|Name=NO01G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2175bp
AGGATAAGATTTAAGGGGGAAGGAAACGTGTCTTTAAAGCTCTTTTCCTC
TGTCTTTTTTTCCAGTCCCTGCCTTTTAAAGCAACCATGTGCTCACCCAC
ATGAGAGAGGAAAGTTGGGGGGTATGCTCTCCAATGGAGTTCGAATTCAA
TTTATTTTCCAAAGACTCCGTAATAACTTCGGTCTTCTAGACTATCAAGT
ACGCATTTGCCTAGGAGGTGGACTTCCTACGGTGAAAGGCATGACGTTTG
ATCAAGTCAGTGTGTTGTCAAGCTCGTAAGCCCCTCGTTTTCACGTTCCC
ATCTCTCGTCCCCTTCAACAAATTGATGTGAGATGATCCATTAATTCATC
ATGTCCTACCCTGGCAACTCACCAGCTTACTCTACCACTATGCATGCCCC
ATGCGGCCAGTAGACAACGCTATCCCACAACATGGGCGTTGGATTGGAGT
CATCGACTTCATCCCGCCGACCAGATGAGAAAGCAAACGCTCCACATCAA
GATTCAGCAGACGCTGCGGACGTCTGCCACGACCACCTCCGCAGCCAGAG
CGTTCACAGCTCGGGCAGCTCTGGCAGTTGCGATGGCAGTAGTCCTCCAC
GTCGGAGCAGCCTAGGCTCGACGTCGTCGAAACAGGAGGCGAGGGAGAGA
GAAGGCAAGGAAAAAGGGCGGGGCCAAGCAAATAGTCTCCTCGGCGTACA
AGGCCGCTTGACTGGCGAGCTCATCAAGCCTCCCGACGCGCACCGCGAAT
CTCTCTTCGCGCCCTTTTACGCTTCGGATGCAGCAGGCCCACCTGCCAAG
AAGCCGCCCTCCTATTTGGCCTCTGCCGACGGTGGGGCGAAGGAGGAAAC
GTGGTGGATGAAGGATGGAGGAGGGAGCGGAGGGGATGAGGAAGGAAACA
TGGACGAGAGTTTGACAGCACGCTTGCGGCGGCACACGCGGGAAGTGGCG
AATTTAAAGACTAAAGAGGAGAGGAAGGTGCCGCAGAGGGAAAGCAATGG
CGGAGATGGAGTGGACAGAGGGAGAAGAGGGGGAGTCGACGAGATCCAGG
ACGAAGGGCGGGAGAAGGGAGGAAGAGGAGAACAGAACGACAAGGGGGAA
AGGGATACCGGATTGAGAAGAGCTGAACAGGGAGCGGCAATGCCCTTGCT
GGTGCAACACCGTCAGCAAGAGCCTGTGACCCATTCCCACCCTGAACCCT
CCCCCTCTACCCTCTCTTTAGCTCCCTCCCTCTCCATCCCCTCGTCGAAT
CTCCCAAAGTATACCATCACAGTGGTCCCTTGGCAAAGGGCTTCATCGAT
CTCTTATCCCTCATCGACTCGTCATGCCTCATCTGGCTGCCTGGGGCTCT
TCCGCTGCACGAGCACTTGGAGCCATGCCTTCCCCTCGACCTCCTTCCCT
CCCTCTTCCTTCATAACCTATAAAATCACACTTACCCTCGGTGACTCTTT
CTCTTTTCCGCTGACATCCTGCTTTTCGTCTTCCCCCTCATTCGTTACCC
CTCCCTCGTCCTCCCCGACCTTCGTCCAGCCCTCCAGCGCCATCCCGGTT
CCCCGCACTCACACTACTATAAAGCGCTACTCGGAGCTCCTGCGTTACCA
CCGTCTTTGGTGCGAGCAGAGACTTGTGCCACGATCCCTCAAGGCCAAAT
TTCCGCCCAAAACTCTGCTGCCGCCGACGATGACGATGGGCACAGTCAGG
ACGGTGGGGCCCGTTGGGCGAATGGACGGAGATGGTGAGGCAGGTGAGGC
ATCCAGCAGCACCCTGAAGAGGGCCTACAAGCTGCAGCTCTATTTTCAAG
CCTTGCTAGACTTGAAAGAGGAAGGGACAGAGGAAGGAAGGATGCAGGGA
GGCAATTTGGTGGAATCGCCTTTGTTCTGGGCTATGTTTGCTGCCAGCGG
GCCAGAATAGTTGGGGATATGATGATTTGCGGGGCAGATCACCAGGAAAA
AGAGAAAGGGAATGTAGCATAACAAAGTGATGGAGATCATATTTATTTGT
GCCACACCTGGACGCAGCAGAGGTAAATGAAATGATTCAATCGCGCGACC
TCAAAGAATATCTACCCAGAAGCAGACAGTCAAGGGGCATATGGAGGCTT
CTGCCGAGGAGGTGAATAGTAGGGAAAAAGGAGCAAAATTTGAGAAAGAC
CAAAATAATATCTTGAGGATGGAAT
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protein sequence of NO01G00190.1

>NO01G00190.1-protein ID=NO01G00190.1-protein|Name=NO01G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MGVGLESSTSSRRPDEKANAPHQDSADAADVCHDHLRSQSVHSSGSSGSC
DGSSPPRRSSLGSTSSKQEAREREGKEKGRGQANSLLGVQGRLTGELIKP
PDAHRESLFAPFYASDAAGPPAKKPPSYLASADGGAKEETWWMKDGGGSG
GDEEGNMDESLTARLRRHTREVANLKTKEERKVPQRESNGGDGVDRGRRG
GVDEIQDEGREKGGRGEQNDKGERDTGLRRAEQGAAMPLLVQHRQQEPVT
HSHPEPSPSTLSLAPSLSIPSSNLPKYTITVVPWQRASSISYPSSTRHAS
SGCLGLFRCTSTWSHAFPSTSFPPSSFITYKITLTLGDSFSFPLTSCFSS
SPSFVTPPSSSPTFVQPSSAIPVPRTHTTIKRYSELLRYHRLWCEQRLVP
RSLKAKFPPKTLLPPTMTMGTVRTVGPVGRMDGDGEAGEASSSTLKRAYK
LQLYFQALLDLKEEGTEEGRMQGGNLVESPLFWAMFAASGPE*
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mRNA from alignment at chr1:30531..32705-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00190.1 ID=NO01G00190.1|Name=NO01G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2175bp|location=Sequence derived from alignment at chr1:30531..32705- (Nannochloropsis oceanica)
AGGATAAGATTTAAGGGGGAAGGAAACGTGTCTTTAAAGCTCTTTTCCTC
TGTCTTTTTTTCCAGTCCCTGCCTTTTAAAGCAACCATGTGCTCACCCAC
ATGAGAGAGGAAAGTTGGGGGGTATGCTCTCCAATGGAGTTCGAATTCAA
TTTATTTTCCAAAGACTCCGTAATAACTTCGGTCTTCTAGACTATCAAGT
ACGCATTTGCCTAGGAGGTGGACTTCCTACGGTGAAAGGCATGACGTTTG
ATCAAGTCAGTGTGTTGTCAAGCTCGTAAGCCCCTCGTTTTCACGTTCCC
ATCTCTCGTCCCCTTCAACAAATTGATGTGAGATGATCCATTAATTCATC
ATGTCCTACCCTGGCAACTCACCAGCTTACTCTACCACTATGCATGCCCC
ATGCGGCCAGTAGACAACGCTATCCCACAACATGGGCGTTGGATTGGAGT
CATCGACTTCATCCCGCCGACCAGATGAGAAAGCAAACGCTCCACATCAA
GATTCAGCAGACGCTGCGGACGTCTGCCACGACCACCTCCGCAGCCAGAG
CGTTCACAGCTCGGGCAGCTCTGGCAGTTGCGATGGCAGTAGTCCTCCAC
GTCGGAGCAGCCTAGGCTCGACGTCGTCGAAACAGGAGGCGAGGGAGAGA
GAAGGCAAGGAAAAAGGGCGGGGCCAAGCAAATAGTCTCCTCGGCGTACA
AGGCCGCTTGACTGGCGAGCTCATCAAGCCTCCCGACGCGCACCGCGAAT
CTCTCTTCGCGCCCTTTTACGCTTCGGATGCAGCAGGCCCACCTGCCAAG
AAGCCGCCCTCCTATTTGGCCTCTGCCGACGGTGGGGCGAAGGAGGAAAC
GTGGTGGATGAAGGATGGAGGAGGGAGCGGAGGGGATGAGGAAGGAAACA
TGGACGAGAGTTTGACAGCACGCTTGCGGCGGCACACGCGGGAAGTGGCG
AATTTAAAGACTAAAGAGGAGAGGAAGGTGCCGCAGAGGGAAAGCAATGG
CGGAGATGGAGTGGACAGAGGGAGAAGAGGGGGAGTCGACGAGATCCAGG
ACGAAGGGCGGGAGAAGGGAGGAAGAGGAGAACAGAACGACAAGGGGGAA
AGGGATACCGGATTGAGAAGAGCTGAACAGGGAGCGGCAATGCCCTTGCT
GGTGCAACACCGTCAGCAAGAGCCTGTGACCCATTCCCACCCTGAACCCT
CCCCCTCTACCCTCTCTTTAGCTCCCTCCCTCTCCATCCCCTCGTCGAAT
CTCCCAAAGTATACCATCACAGTGGTCCCTTGGCAAAGGGCTTCATCGAT
CTCTTATCCCTCATCGACTCGTCATGCCTCATCTGGCTGCCTGGGGCTCT
TCCGCTGCACGAGCACTTGGAGCCATGCCTTCCCCTCGACCTCCTTCCCT
CCCTCTTCCTTCATAACCTATAAAATCACACTTACCCTCGGTGACTCTTT
CTCTTTTCCGCTGACATCCTGCTTTTCGTCTTCCCCCTCATTCGTTACCC
CTCCCTCGTCCTCCCCGACCTTCGTCCAGCCCTCCAGCGCCATCCCGGTT
CCCCGCACTCACACTACTATAAAGCGCTACTCGGAGCTCCTGCGTTACCA
CCGTCTTTGGTGCGAGCAGAGACTTGTGCCACGATCCCTCAAGGCCAAAT
TTCCGCCCAAAACTCTGCTGCCGCCGACGATGACGATGGGCACAGTCAGG
ACGGTGGGGCCCGTTGGGCGAATGGACGGAGATGGTGAGGCAGGTGAGGC
ATCCAGCAGCACCCTGAAGAGGGCCTACAAGCTGCAGCTCTATTTTCAAG
CCTTGCTAGACTTGAAAGAGGAAGGGACAGAGGAAGGAAGGATGCAGGGA
GGCAATTTGGTGGAATCGCCTTTGTTCTGGGCTATGTTTGCTGCCAGCGG
GCCAGAATAGTTGGGGATATGATGATTTGCGGGGCAGATCACCAGGAAAA
AGAGAAAGGGAATGTAGCATAACAAAGTGATGGAGATCATATTTATTTGT
GCCACACCTGGACGCAGCAGAGGTAAATGAAATGATTCAATCGCGCGACC
TCAAAGAATATCTACCCAGAAGCAGACAGTCAAGGGGCATATGGAGGCTT
CTGCCGAGGAGGTGAATAGTAGGGAAAAAGGAGCAAAATTTGAGAAAGAC
CAAAATAATATCTTGAGGATGGAAT
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Coding sequence (CDS) from alignment at chr1:30531..32705-

>NO01G00190.1 ID=NO01G00190.1|Name=NO01G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=1479bp|location=Sequence derived from alignment at chr1:30531..32705- (Nannochloropsis oceanica)
ATGGGCGTTGGATTGGAGTCATCGACTTCATCCCGCCGACCAGATGAGAA
AGCAAACGCTCCACATCAAGATTCAGCAGACGCTGCGGACGTCTGCCACG
ACCACCTCCGCAGCCAGAGCGTTCACAGCTCGGGCAGCTCTGGCAGTTGC
GATGGCAGTAGTCCTCCACGTCGGAGCAGCCTAGGCTCGACGTCGTCGAA
ACAGGAGGCGAGGGAGAGAGAAGGCAAGGAAAAAGGGCGGGGCCAAGCAA
ATAGTCTCCTCGGCGTACAAGGCCGCTTGACTGGCGAGCTCATCAAGCCT
CCCGACGCGCACCGCGAATCTCTCTTCGCGCCCTTTTACGCTTCGGATGC
AGCAGGCCCACCTGCCAAGAAGCCGCCCTCCTATTTGGCCTCTGCCGACG
GTGGGGCGAAGGAGGAAACGTGGTGGATGAAGGATGGAGGAGGGAGCGGA
GGGGATGAGGAAGGAAACATGGACGAGAGTTTGACAGCACGCTTGCGGCG
GCACACGCGGGAAGTGGCGAATTTAAAGACTAAAGAGGAGAGGAAGGTGC
CGCAGAGGGAAAGCAATGGCGGAGATGGAGTGGACAGAGGGAGAAGAGGG
GGAGTCGACGAGATCCAGGACGAAGGGCGGGAGAAGGGAGGAAGAGGAGA
ACAGAACGACAAGGGGGAAAGGGATACCGGATTGAGAAGAGCTGAACAGG
GAGCGGCAATGCCCTTGCTGGTGCAACACCGTCAGCAAGAGCCTGTGACC
CATTCCCACCCTGAACCCTCCCCCTCTACCCTCTCTTTAGCTCCCTCCCT
CTCCATCCCCTCGTCGAATCTCCCAAAGTATACCATCACAGTGGTCCCTT
GGCAAAGGGCTTCATCGATCTCTTATCCCTCATCGACTCGTCATGCCTCA
TCTGGCTGCCTGGGGCTCTTCCGCTGCACGAGCACTTGGAGCCATGCCTT
CCCCTCGACCTCCTTCCCTCCCTCTTCCTTCATAACCTATAAAATCACAC
TTACCCTCGGTGACTCTTTCTCTTTTCCGCTGACATCCTGCTTTTCGTCT
TCCCCCTCATTCGTTACCCCTCCCTCGTCCTCCCCGACCTTCGTCCAGCC
CTCCAGCGCCATCCCGGTTCCCCGCACTCACACTACTATAAAGCGCTACT
CGGAGCTCCTGCGTTACCACCGTCTTTGGTGCGAGCAGAGACTTGTGCCA
CGATCCCTCAAGGCCAAATTTCCGCCCAAAACTCTGCTGCCGCCGACGAT
GACGATGGGCACAGTCAGGACGGTGGGGCCCGTTGGGCGAATGGACGGAG
ATGGTGAGGCAGGTGAGGCATCCAGCAGCACCCTGAAGAGGGCCTACAAG
CTGCAGCTCTATTTTCAAGCCTTGCTAGACTTGAAAGAGGAAGGGACAGA
GGAAGGAAGGATGCAGGGAGGCAATTTGGTGGAATCGCCTTTGTTCTGGG
CTATGTTTGCTGCCAGCGGGCCAGAATAG
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Synonyms
Publications