NO01G00070.1, NO01G00070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00070.1
Unique NameNO01G00070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length918
Alignment locationchr1:13476..14393 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:13476..14393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00070.1 vs.
Match: XP_009033836.1 (hypothetical protein AURANDRAFT_61938 [Aureococcus anophagefferens]; EGB11473.1 hypothetical protein AURANDRAFT_61938 [Aureococcus anophagefferens])

HSP 1 Score: 97.8 bits (242), Expect = 6.100e-17
Identity = 87/296 (29.39%), Postives = 139/296 (46.96%), Query Frame = 0 
Query:    4 FLQINAHPKNSDLRLLFHFTAALVFSGAGIWVYLMSHPATQALLHLKDRGGQVSFLPVAGRIEEKCGEKVQEEDASLLHASAIDNQVGRHSSTPSTSKTTTLNISSNSRACSRTTHLSSNAVIQALSEAERDFVEATIAPYCWVLSITIASSIFQSSLLAYVQSSRPQSNYCVCELLYFVRLFADFLGRPLACLLPHYLPISQSSQLVSATLARMSLLLLFLVYIFFPAHVPQSDVFVTLLVAVFALLSGYLVVLSYEYAAKTVDHCKAYQAHAGSVMNLHFQSACFVAVICSLFL 300
            +L I +    + +R+ F   A L  SG   W  L+  P  QALL  KDR      +  A  IE+K    V    A+   A   ++     S+ P   +         + A +            ALS  + + +   + P    L  T+  SIF ++  AY  S+   S   + ++LYF RLF D  GRP   L P    +    QL +  ++R+   ++F VYIF P  +P SD+FV   + +F++ SGYL ++SYEYAA+      A +++A ++MN  FQ + F+AV+  + +
Sbjct: 1053 YLNIGSTASPASIRVFFILMATLAVSGLVAWTMLVLSPKIQALLADKDRCVDELDMTKAPLIEDKAKAPVSGSGATA--AFRRNSSAEDVSAAPGDDEAPGRLEGDEAAAETPADGDDDKPTFDALSGNDMEAIAKQVWPCRVALFWTMFGSIFTAAFFAYANSN---SGIDIEQVLYFTRLFGDLFGRPFTSL-PRPKCLQTGQQLATFAISRLIFSVIFFVYIFVPG-IPSSDLFVIADIGIFSVSSGYLGIISYEYAARDFKSTAA-KSYAATLMNTTFQISMFLAVLLGIII 1340
The following BLAST results are available for this feature:
BLAST of NO01G00070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009033836.16.100e-1729.39hypothetical protein AURANDRAFT_61938 [Aureococcus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00070NO01G00070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00070.1NO01G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00070.1.cds1NO01G00070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00070.1 ID=NO01G00070.1|Name=NO01G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=918bp
ATGGTCTCCTTTCTCCAAATAAATGCTCACCCAAAAAACAGCGACTTGCG
CCTTCTCTTCCATTTCACGGCAGCACTGGTGTTTAGCGGAGCGGGAATAT
GGGTCTATCTCATGTCCCACCCTGCGACACAAGCGCTACTGCATTTGAAG
GACCGAGGAGGACAGGTCAGCTTTCTTCCAGTCGCGGGGCGGATTGAGGA
GAAATGCGGAGAAAAGGTTCAGGAGGAGGACGCTTCCCTTTTACATGCGT
CCGCCATTGACAACCAAGTCGGACGTCACAGCAGCACCCCATCTACAAGC
AAAACTACCACCTTAAATATCAGTAGCAACAGCCGAGCGTGCAGCCGCAC
CACTCATTTATCATCCAATGCCGTCATCCAGGCCCTGTCAGAGGCGGAAC
GGGACTTTGTGGAAGCAACAATAGCGCCCTATTGCTGGGTACTATCCATT
ACCATTGCCTCGTCCATCTTCCAATCGTCACTCCTGGCCTATGTACAGAG
CAGCCGCCCGCAGTCCAATTACTGTGTCTGCGAGCTGCTCTATTTTGTGC
GTCTCTTCGCCGACTTTCTTGGGCGTCCTCTCGCTTGCCTTCTCCCCCAC
TATCTCCCTATATCGCAATCGTCACAACTTGTATCTGCTACGCTGGCCCG
CATGTCCCTCTTGCTTCTATTTCTGGTCTACATCTTCTTCCCCGCACACG
TCCCGCAATCGGACGTGTTTGTGACCCTTCTGGTCGCCGTCTTCGCCCTT
TTGTCTGGCTACCTCGTCGTCCTCTCGTACGAGTACGCGGCTAAGACGGT
CGACCACTGCAAAGCCTATCAGGCGCATGCGGGCAGCGTCATGAACCTCC
ACTTCCAATCCGCATGCTTTGTGGCCGTGATCTGCAGTCTTTTTCTTGTT
GACTTGGGCTTTTCCTGA
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protein sequence of NO01G00070.1

>NO01G00070.1-protein ID=NO01G00070.1-protein|Name=NO01G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MVSFLQINAHPKNSDLRLLFHFTAALVFSGAGIWVYLMSHPATQALLHLK
DRGGQVSFLPVAGRIEEKCGEKVQEEDASLLHASAIDNQVGRHSSTPSTS
KTTTLNISSNSRACSRTTHLSSNAVIQALSEAERDFVEATIAPYCWVLSI
TIASSIFQSSLLAYVQSSRPQSNYCVCELLYFVRLFADFLGRPLACLLPH
YLPISQSSQLVSATLARMSLLLLFLVYIFFPAHVPQSDVFVTLLVAVFAL
LSGYLVVLSYEYAAKTVDHCKAYQAHAGSVMNLHFQSACFVAVICSLFLV
DLGFS*
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mRNA from alignment at chr1:13476..14393+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00070.1 ID=NO01G00070.1|Name=NO01G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=918bp|location=Sequence derived from alignment at chr1:13476..14393+ (Nannochloropsis oceanica)
ATGGTCTCCTTTCTCCAAATAAATGCTCACCCAAAAAACAGCGACTTGCG
CCTTCTCTTCCATTTCACGGCAGCACTGGTGTTTAGCGGAGCGGGAATAT
GGGTCTATCTCATGTCCCACCCTGCGACACAAGCGCTACTGCATTTGAAG
GACCGAGGAGGACAGGTCAGCTTTCTTCCAGTCGCGGGGCGGATTGAGGA
GAAATGCGGAGAAAAGGTTCAGGAGGAGGACGCTTCCCTTTTACATGCGT
CCGCCATTGACAACCAAGTCGGACGTCACAGCAGCACCCCATCTACAAGC
AAAACTACCACCTTAAATATCAGTAGCAACAGCCGAGCGTGCAGCCGCAC
CACTCATTTATCATCCAATGCCGTCATCCAGGCCCTGTCAGAGGCGGAAC
GGGACTTTGTGGAAGCAACAATAGCGCCCTATTGCTGGGTACTATCCATT
ACCATTGCCTCGTCCATCTTCCAATCGTCACTCCTGGCCTATGTACAGAG
CAGCCGCCCGCAGTCCAATTACTGTGTCTGCGAGCTGCTCTATTTTGTGC
GTCTCTTCGCCGACTTTCTTGGGCGTCCTCTCGCTTGCCTTCTCCCCCAC
TATCTCCCTATATCGCAATCGTCACAACTTGTATCTGCTACGCTGGCCCG
CATGTCCCTCTTGCTTCTATTTCTGGTCTACATCTTCTTCCCCGCACACG
TCCCGCAATCGGACGTGTTTGTGACCCTTCTGGTCGCCGTCTTCGCCCTT
TTGTCTGGCTACCTCGTCGTCCTCTCGTACGAGTACGCGGCTAAGACGGT
CGACCACTGCAAAGCCTATCAGGCGCATGCGGGCAGCGTCATGAACCTCC
ACTTCCAATCCGCATGCTTTGTGGCCGTGATCTGCAGTCTTTTTCTTGTT
GACTTGGGCTTTTCCTGA
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Coding sequence (CDS) from alignment at chr1:13476..14393+

>NO01G00070.1 ID=NO01G00070.1|Name=NO01G00070.1|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at chr1:13476..14393+ (Nannochloropsis oceanica)
ATGGTCTCCTTTCTCCAAATAAATGCTCACCCAAAAAACAGCGACTTGCG
CCTTCTCTTCCATTTCACGGCAGCACTGGTGTTTAGCGGAGCGGGAATAT
GGGTCTATCTCATGTCCCACCCTGCGACACAAGCGCTACTGCATTTGAAG
GACCGAGGAGGACAGGTCAGCTTTCTTCCAGTCGCGGGGCGGATTGAGGA
GAAATGCGGAGAAAAGGTTCAGGAGGAGGACGCTTCCCTTTTACATGCGT
CCGCCATTGACAACCAAGTCGGACGTCACAGCAGCACCCCATCTACAAGC
AAAACTACCACCTTAAATATCAGTAGCAACAGCCGAGCGTGCAGCCGCAC
CACTCATTTATCATCCAATGCCGTCATCCAGGCCCTGTCAGAGGCGGAAC
GGGACTTTGTGGAAGCAACAATAGCGCCCTATTGCTGGGTACTATCCATT
ACCATTGCCTCGTCCATCTTCCAATCGTCACTCCTGGCCTATGTACAGAG
CAGCCGCCCGCAGTCCAATTACTGTGTCTGCGAGCTGCTCTATTTTGTGC
GTCTCTTCGCCGACTTTCTTGGGCGTCCTCTCGCTTGCCTTCTCCCCCAC
TATCTCCCTATATCGCAATCGTCACAACTTGTATCTGCTACGCTGGCCCG
CATGTCCCTCTTGCTTCTATTTCTGGTCTACATCTTCTTCCCCGCACACG
TCCCGCAATCGGACGTGTTTGTGACCCTTCTGGTCGCCGTCTTCGCCCTT
TTGTCTGGCTACCTCGTCGTCCTCTCGTACGAGTACGCGGCTAAGACGGT
CGACCACTGCAAAGCCTATCAGGCGCATGCGGGCAGCGTCATGAACCTCC
ACTTCCAATCCGCATGCTTTGTGGCCGTGATCTGCAGTCTTTTTCTTGTT
GACTTGGGCTTTTCCTGA
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Synonyms
Publications