jgi.p|Nanoce1779_2|537101, gene_91 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|537101
Unique Namegene_91
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_3:242977..246662 -

Link to JBrowse

Properties
Property NameValue
TranscriptId537187
ProteinId537101
Product nameDNA-directed RNA polymerase II 135 kDa polypeptide
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:242977..246662 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00340625'-3' RNA polymerase activity
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL047ncniL047Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01150NO01G01150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|537101mRNA_91-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|537101mRNA_91Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|537101

>mRNA_91-protein ID=mRNA_91-protein|Name=jgi.p|Nanoce1779_2|537101|organism=Nannochloropsis oceanica|type=polypeptide|length=1168bp
MGNEAEEVSQDDAWVVISAFFDEKGLVRQQLDSFDSFLEVGLQECVDDAG
DIVVTSEPQYGPGAEEQDLLKRYKISFGQVYMSSPNFPEADRETHLLWPA
DARIRNLTYGCNLYTDVTVRVVQLDERGNETEQQKEWDYEQEHLGRMPLM
ILSRFCVLAKASGRELMEQNECIYDQGGYFIINGSEKVIIAQERMSNNDV
YCFRRKQPHKYSWVCETRSNQVRGSRATSTMYLQIYAPGKQKANCINANI
AHIREEIPVVVVFRALGFVTDKDILSHIVYDLRDEEMLDRFRASLEEAEV
IKERNLALDFIGKRGSIENAGRAKRIQYAKLILQKEMLPHVGTEENIETR
KAFFLGYTVHKMLMCSLGRAEEDDRDHYGKKRLDLAGVLIRGLFHQLFLR
LCKDVRRYIRSCLNEAKNFNITQAIKSRIITDGLKYSLATGNWGDRLTAT
RAGVSQVLNRLTYAASLSHLRRLNTPLGREGKQAKPRQLHNSHWGMVCPA
ETPEGHAVGLVKNLALMAYISKESPNIPILEVLTEYGTEGLDETLPSEIA
LPTVTRIFCNGNWIGIHRKPLVLMKNLLDTRRNNDIPPDVSIINAISEQE
LRIYTDAGRVLRPLFVVENGGKRLKIKRRHIRRLAPMKEYAFTNLLQDGL
VEYIDTEEEETCMVAMDPGDLTLEGSPRTYTHCEIHPSMILGVVASVIPF
PDHNQSPRNTYQSAMGKQAMGVYTSAYQNRMDTMAHVLHYPQRPLVTTKA
MEYLKFRELPSGTNAVVAIMIYSGYNQEDSLIMNQSAIDRGFFRSSFYRC
YQDEEKGRGAGGSLLSSETFEIPTRDTTEGMRFGSYERLDEDGLCPPGVR
VNGGDILIGKTSPIMATGADGTVNRLSKKDGSTSMRTQESGIVDRVVLTT
NEKGFKFVKVRIRNVRVPQIGDKFSSRHGQKGTIGMTYRQEDMPFTQQGI
TPDIIVNPHAIPSRMTIGQLVECLTGKVSSLAGSEGDGTAFNTSLTVDNV
ARVLHSLGYQRHGNETLHSGMTGRQLTAKIFIGPTFYQRLKHLVDDKIHS
RARGPVAMLTRQPLEGRGRDGGLRMGEMERDCLISHGAAAFIRDRLFLNS
DPYRVHVCDVCGLIAKANLRTGDFMCLSCKEKNRISQVFMPYACKLLFQE
LMSMCIAPRMFTSTKGK*
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Synonyms
Publications