jgi.p|Nanoce1779_2|672563, gene_6705 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672563
Unique Namegene_6705
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_18:487685..493060 -

Link to JBrowse

Properties
Property NameValue
TranscriptId672649
ProteinId672563
Product nameIsoleucyl-tRNA synthetase
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:487685..493060 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004822isoleucine-tRNA ligase activity
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006428isoleucyl-tRNA aminoacylation
GO:0006412translation
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL028ncniL028Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03760NO06G03760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672563mRNA_6705-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672563mRNA_6705Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|672563

>mRNA_6705-protein ID=mRNA_6705-protein|Name=jgi.p|Nanoce1779_2|672563|organism=Nannochloropsis oceanica|type=polypeptide|length=1206bp
MAEVEASHNFAQAEEEILKLWEELGAFEQSLKLSEGRPEFTFYDGPPFAT
GLPHYGHLLAGTIKDTVTRFAHQKGHHVVRRFGWDCHGLPVEFEIDQELG
IKDREQVFAMGIAKYNHHCRSIVTRYTKEWERTVTRIGRWIDFKNDYKTL
DPWFMESVWWVFSELHKKGLVYQGYKVMPFSTACGTPLSNFEAGLNYKDV
QDPAVTVSFPLLSDPTTSLLAWTTTPWTLPSNLALCVNPTMLYVKIKDKK
SGKQYVLAEARLVQLYPKLASAKKEPTAEQKAEWYEIVGAPFPGSEMEGW
RYAPLFDYFVAWDEEGKAAGKEGGRDRGAFRVLVDGYVTSDSGTGVVHQA
PGFGEDDYRVCLAQGVIAKGTNVPCPVDSNGRFTAEVVDFGGKHVKEADA
EICMALKGKGRMVEKATYSHSYPYCWRSDTPLIYKAVPSWFVAVGTVKEK
LLLNNEKTYWVPAFVKEHRFHNWLADAKDWAISRNRFWGTPIPLWCSDDM
EEQVAIGSIEQLETLSGVKGITDLHRESVDDITIPSSRGPSFPPLRRVDE
VFDCWFESGSMPYAQMHYPFENKEKFEANFPADFIAEGLDQTRGWFYTLM
VISTCLFDKPPFQNLIVNGLVLASDGKKMSKRLKNYPPPDDILKKYGADA
LRLYLISSPVVRAEPLRFKEDDVLGMIKRVFLPWINAFRFFQQGLARLEM
EKGVNFVPSPERARASNNVMDVWIQASLQGMIKFVHDEMAAYRLYTVTPR
LLHFIEELTNWYVRLNRTRLKGQEGDEEAFTGLSTLYEILLSMTVLMAPF
TPFLTEFLYQHLRKLHPNSSSSSSSLPPDAIGKADSVHYVMLPMYDEARL
NPACEERMATLQTVIELGRMVRERNNISLKTPVKEVIVVSKDQGKLSHLD
ESVRGYALQELNVWSVTTSEDVAKWSNIHVEPNNKLLGKRLGKDRGKVAA
AIAALTPAEIEAFQTNGSLTVAGYELSGEELLLKKEFKGDTSIFQAESSQ
DGTLLVVLDTRQDERVLAQATARELVNRVQKLRKRVGLKLTDVVEIYYET
ADKGIQEALSSNAAMVQSTLRVFPLPASLLKPAHAVELGSEQCTINDAPV
TVFVTRPTISLCEESILKVVGGKESKAAGVSGFVASMGYERLKEAGKEGG
EMAFVLDGEEVRLSMGEHYFMSATHKARAKALLPELAALAVTEGEREEGN
GGEKK*
back to top
Synonyms
Publications