jgi.p|Nanoce1779_2|597322, gene_6552 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597322
Unique Namegene_6552
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_18:138650..140547 -

Link to JBrowse

Properties
Property NameValue
TranscriptId597408
ProteinId597322
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:138650..140547 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0016987sigma factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
GO:0006355regulation of transcription, DNA-templated
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL028ncniL028Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02340NO06G02340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597322mRNA_6552-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597322mRNA_6552Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|597322

>mRNA_6552-protein ID=mRNA_6552-protein|Name=jgi.p|Nanoce1779_2|597322|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MISKVITTSGGTTQRPSARRRHGLAVLMVLTSMGLTQTQAFLMPPPGVAA
RRAGTNKPESTTTTLRASSSISARMEAPFPVIKESSTTISSSARRARRRQ
SSASTAATVPPPSSSISSQQQLSRRQTSSQQQDNSELLRRQQVRKQSEPG
TTQADALMHGRVRAVQRAAVAIQKHRALAKELGRAPSPSEWGEALGGVTE
ESLRAVLEQGTVARAALVKGWDGLVAKFVGKFAMRLSDSELQDLVVEGQL
GVVEAAVRFEGGQGAGFKTYVYYWVRKRVMDAAAMYDRSTFTGLHEQRQA
SHIWKVVEAHEKESGGNVMSKEEIAAKVGLPVARVEELGRKGQRYGLIGA
SGREGVMAVDTAQEQGGGAGRGVGEHAIRGALAALPREERTVLSLRLGLE
DGQPKGWEEIVRTMEGCSLSYLRKVESKAKIMLRRNVDVVKLIHRRPASF
DEVLFAGGE*
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Synonyms
Publications